BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477672
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04110.1 | Symbols: GLR1, ATGLR1.1, GLR1.1 | glutamate recep... 2165 0.0
> AT3G04110.1 | Symbols: GLR1, ATGLR1.1, GLR1.1 | glutamate receptor
1.1 | chr3:1077328-1080405 FORWARD LENGTH=2629
Length=2629
Score = 2165 bits (1172), Expect = 0.0
Identities = 1338/1416 (94%), Gaps = 19/1416 (1%)
Strand=Plus/Plus
Query 1175 AAGAAGACAGATTGTTTGGCCTGGCGGGTCTCGTAAGATCCCAAGACACCGTGTTTTGGC 1234
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1218 AAGAAGACAGATTGTTTGGCCTGGCAGGTCTCGTAAGATCCCAAGACACCGTGTTTTGGC 1277
Query 1235 AGAGAATGGTGAAAAGAAAGTGCTTAGGATCTTAGTTACCGCAGGAAACAAGGTCCCGAA 1294
|||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1278 AGAGAAAGGTGAAAAGAAGGTGCTTAGGGTCTTAGTTACCGCAGGAAACAAGGTCCCGCA 1337
Query 1295 TCTAGTGTCGGTGCGTCCTGATCCTGAAACAGGTGTTAATACAGTCTCAGGATTCTGCGT 1354
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1338 TCTAGTGTCGGTGCGTCCTGATCCTGAAACAGGTGTTAATACTGTCTCTGGATTCTGCGT 1397
Query 1355 AGAGGTTTTCAAGACTTGCATTGCTCCTTTTAACTACGAGCTTGAATTCATACCTTATCG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1398 AGAGGTTTTCAAGACTTGCATTGCTCCTTTTAACTACGAGCTTGAATTCATACCTTACCG 1457
Query 1415 TGGAAACAATGACAATCTTGCTTATCTACTCTCTACTCAGAGTGACAAATATGATGCAGC 1474
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1458 TGGAAACAATGACAATCTTGCTTATCTACTTTCTACTCAGAGAGACAAGTATGATGCAGC 1517
Query 1475 AGTTGGTGATATCACCATCACTTCCAACAGATCTTTGTATGTTGATTTTACTTTGCCTTA 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1518 AGTTGGTGATATCACCATCACTTCCAACAGATCTTTGTATGTTGATTTTACTTTGCCGTA 1577
Query 1535 CACAGACATTGGTATTGGAATCTTGACAGTAAAAAAGAAAAGCCAAGGAATGTGGACTTT 1594
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1578 CACTGACATTGGTATTGGAATCTTGACAGTGAAAAAGAAAAGCCAAGGGATGTGGACCTT 1637
Query 1595 CTTTGATCCTTTTGAAAAATCCTTGTGGCTAGCAAGTGGAGCTTTCTTCGTCTTGACTGG 1654
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1638 CTTTGATCCTTTCGAAAAATCCTTGTGGCTAGCAAGTGGAGCTTTCTTTGTCTTAACTGG 1697
Query 1655 GATTGTTGTTTGGTTGGTTGAACGGTCCGTTAATCCGGAATTTCAGGGCTCTTGGGGACA 1714
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GATTGTTGTTTGGTTAGTTGAACGGTCCGTTAATCCGGAATTTCAGGGCTCTTGGGGACA 1757
Query 1715 ACAGCTTAGTATGATGCTCTGGTTTGGATTCTCTACCATTGTGTTTGCTCACAGAGAGAA 1774
||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1758 ACAACTTAGTATGATGCTCTGGTTTGGTTTCTCAACCATTGTATTTGCTCACAGAGAGAA 1817
Query 1775 GCTACAAAAAATGTCATCAAGATTCCTAGTCATAGTTTGGGTTTTTGTGGTGTTAATATT 1834
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1818 GCTACAGAAAATGTCATCAAGATTCTTAGTCATAGTTTGGGTTTTTGTGGTGTTAATATT 1877
Query 1835 GACTTCAAGTTACAGCGCAAATTTGACATCAACCAAGACCATTTCTCGCATGCAATTAAA 1894
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1878 GACTTCAAGTTACAGCGCAAACTTGACATCAACCAAGACCATTTCTCGCATGCAATTAAA 1937
Query 1895 TCATCAGATGGTTTTCGGGGGATCTACAACGTCAATGACTGCGAAGCTCGGATCCATTAA 1954
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1938 TCATCAGATGGTTTTCGGGGGATCTACGACGTCAATGACTGCGAAGCTCGGATCCATTAA 1997
Query 1955 TGCAGTTGAGGCATATGCACAACTTTTACGAGATGGAACTCTTAGTCATGTCATCAATGA 2014
|||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1998 TGCAGTTGAGGCCTATGCACAACTTTTGCGAGATGGAACTCTTAATCATGTCATCAATGA 2057
Query 2015 AATACCGTATCTCAGTATCCTTATCGGAAATTATCCCAATGATTTCGTAATGACTGATAG 2074
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2058 AATACCTTATCTCAGTATCCTTATCGGAAATTATCCGAATGATTTCGTAATGACAGATAG 2117
Query 2075 AGTGACTAATACCAATGGCTTTGGCTTTATGTTCCAGAAAGGTTCGGATTTGGTTCCTAA 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 AGTGACTAATACCAATGGCTTTGGCTTTATGTTCCAGAAAGGTTCGGATTTGGTTCCTAA 2177
Query 2135 AGTATCGCGAGAAATCGCGAAGCTAAGGTCATTGGGAATGCTGAAAGACATGGAGAAAAA 2194
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2178 AGTATCGCGAGAAATCGCGAAGCTAAGATCATTGGGAATGTTGAAAGACATGGAGAAAAA 2237
Query 2195 ATGGTTTCAAAAACTGGATTCACTAAATGTACATTCCAACACCGAGGAAGTTGCATCTAC 2254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 ATGGTTTCAAAAACTGGATTCACTAAATGTACATTCCAACACCGAGGAAGTTGCATCTAC 2297
Query 2255 CATCGACGATGATGAGGCATCTAAGCGATTCACCTTCCGAGAGTTGCGCGGTTTGTTCAT 2314
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2298 CAACGACGATGATGAGGCATCTAAGCGATTCACCTTCCGTGAGTTGCGCGGTTTGTTCAT 2357
Query 2315 CATTGCGGGAGTTGCTCATGTTCTAGTACTAGCCCTGCATCTCTTTCATATGCGTCAAGA 2374
||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 2358 CATTGCGGGAGCTGCTCATGTTCTCGTACTAGCCCTACATCTCTTTCATACGCGTCAAGA 2417
Query 2375 GGTATCACGACTATTCACCAAACTTCAAAGCTTCTATAAGTAAAAAGTGATCCATCATTC 2434
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2418 GGTATCACGACTATGCACCAAACTTCAAAGCTTCTATAAGTAAAAAGTGATCCATCGTTC 2477
Query 2435 ATAAGCTCTAGTATAGCAACTGATCGGGAGAGGAGTGGACCAAGT--CAT-AA-GTA-AC 2489
|||||||||| |||||||| ||| ||||| |||| | | |||| || || ||| ||
Sbjct 2478 ATAAGCTCTACTATAGCAATTGA-CGGGACAGGACTC-AT-AAGTAACAACAAAGTACAC 2534
Query 2490 ----AA-CAAAGCACAACATGTAATACTTGTTTTT----CC-GTAGAAATTCACATGTAA 2539
|| |||| || |||||||||||||||||| || || ||||||||||||||
Sbjct 2535 TTCGAAACAAATTTCA-CATGTAATACTTGTTTTTTTTTCCCGTTTAAATTCACATGTAA 2593
Query 2540 TAATTTAACTCACGTAAATACTAAAATTATTCACCC 2575
|||||||| |||||||||||||||| | ||||||||
Sbjct 2594 TAATTTAATTCACGTAAATACTAAAGTGATTCACCC 2629
Score = 1731 bits (937), Expect = 0.0
Identities = 1104/1185 (93%), Gaps = 10/1185 (1%)
Strand=Plus/Plus
Query 1 AGCGAACGGTACAAAGCTATACAAGAAGTTAAATGGAGATTCTGATTTCTATTGCCATTC 60
|||||||| |||| ||||||||||||| ||| |||||||||||| |||||||| ||||||
Sbjct 2 AGCGAACGTTACAGAGCTATACAAGAAATTATATGGAGATTCTGTTTTCTATTTCCATTC 61
Query 61 TTGCTCTTCTCTTTTCCAGTGTAGTAGCTGGTCCTAA-CGAC---GATGCTTTCGAAGAG 116
||||||||||||||||| | |||||||||| ||| || |||| |||| ||||||||||
Sbjct 62 TTGCTCTTCTCTTTTCCGGAGTAGTAGCTGCTCC-AAGCGACGATGATGTTTTCGAAGAG 120
Query 117 GTTAGGGTTGGATTGGTGGTTGACTTGAGTTCTACACAAGGCAAGATTCTGGTAACATCT 176
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 121 GTTAGGGTTGGATTGGTGGTTGACTTGAGTTCTATACAAGGCAAGATTCTGGAAACTTCT 180
Query 177 CTTAACTTAGCGCTTTCAGATTTCTATGGCATCAACAATGGATACCGAACCAGAGTCTCT 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTAACTTAGCGCTTTCAGATTTCTATGGCATCAACAATGGATACCGAACCAGAGTCTCT 240
Query 237 ATTTTGGTCAGAGACTCCCAAGGAGACCCGATCATTGCTCTTGCCGCCGCTACTGATCTT 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTTGGTCAGAGACTCCCAAGGAGACCCGATCATTGCTCTTGCCGCCGCTACTGATCTT 300
Query 297 CTCAAAAATGCAAAAGTGGAAGCCATTGTTGGTGCACAATCATTACAGGAAGCAAAGCTT 356
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 301 CTCAAAAATGCAAAAGCGGAAGCCATTGTTGGTGCACAATCATTACAAGAGGCAAAGCTT 360
Query 357 TTGGCGACGATTAGCGAAAAAGCTAACGTTCCGGTCATATCTACTTTCTTGCCAAACACG 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TTGGCGACGATTAGCGAAAAAGCTAAAGTTCCGGTCATATCTACTTTCTTGCCAAACACG 420
Query 417 TTATCTTTGAACAAATACGATCACTTTATTCAATGGACGCATGATACGACGTCAGAGGCT 476
||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 421 TTATCTTTGAAGAAATACGATAACTTTATTCAATGGACGCATGATACTACATCAGAGGCT 480
Query 477 AAGGGGATTATGAGTCTCATACAAGATTTCAGTTGTAAATCGGTTGTGGTTATATACGAG 536
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGGGAATTACAAGTCTCATACAAGATTTCAGTTGTAAATCGGTTGTGGTTATATACGAG 540
Query 537 GATGCTGATGACTGGAGAGAGAGTTTGCAAATATTGGTTGAGAATTTTCAAGATAAAGGA 596
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATGCTGATGATTGGAGTGAGAGTTTGCAAATATTGGTTGAGAATTTTCAAGATAAAGGA 600
Query 597 ATCCATATCGCTCGTTCTGCTTCTTTTGCAGTCTCATCATCAGGAGAAAATCATATGATG 656
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCTATATCGCTCGTTCTGCTTCTTTTGCAGTCTCATCATCAGGAGAAAATCATATGATG 660
Query 657 AATCAGCTAAGGAAGCTCAAGGTATCAAGAACAACAGTTTTCGTGGTGCATATGTCTGAG 716
||||||||||||||||| ||||| |||||| || | ||||| |||||||||||||| |||
Sbjct 661 AATCAGCTAAGGAAGCTTAAGGTCTCAAGAGCATCGGTTTTTGTGGTGCATATGTCCGAG 720
Query 717 TTTCTTGTTTCTCGTCTTTTTCGATGCGTTGAGAAGTTAGGTTTGACGGAAGAAGGGTTT 776
|||||||||||||||| || | ||| || |||||||||||||||| |||||||| |||
Sbjct 721 ATTCTTGTTTCTCGTCTCTTCCAATGTGTAGAGAAGTTAGGTTTGATGGAAGAAGCGTTC 780
Query 777 GCTTGGATCCTCACTGTGAGAACCATGAACTACTTGGAATATTTTGAAACAACCAGGTCA 836
|||||||||||||||| ||||||||||||||||||||| |||||| || ||| |||||
Sbjct 781 GCTTGGATCCTCACTGCAAGAACCATGAACTACTTGGAACATTTTGCAATAACTAGGTCG 840
Query 837 ATGCAAGGGGTCATTGGTTTCAAACCTTACATTCCTGTATCCGAAGAAGTTACGAATTTT 896
|||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||||
Sbjct 841 ATGCAAGGGGTCATTGGTTTCAAATCTTACATCCCTGTATCTGAAGAAGTTAAGAATTTT 900
Query 897 ACTTCAAGATTGAAGAAACTTATGGGTGATGATACAGAAACAGAGCATTCTAGTAAAATC 956
||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct 901 ACTTCAAGATTGAGGAAACGTATGGGAGATGATACAGAAACAGAGCATTCTAGTGTAATC 960
Query 957 ATCGGTTTACGAGCACACGATATAGCTTGTATTCTAGCAATTGCAGTAGAGAAGATT-AG 1015
||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| || ||
Sbjct 961 ATCGGTTTACGCGCACACGATATCGCTTGTATTCTAGCAAATGCAGTAGAGAAG-TTCAG 1019
Query 1016 TGTAAGAGGTAAAGCTGAAGCATCTTCGAATGTATCAG---ATCTTCTTAAGACAATTAG 1072
|||||| ||||||| ||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 1020 TGTAAGTGGTAAAGTTGAAGCATCTTCGAATGTATCAGCTGATCTTCTGGATACAATTAG 1079
Query 1073 AAATAGTAGATTCAAGGGTTTGAGTGGTGTCATCCAAATCTCTGACAACAAATTTATCTC 1132
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 ACATAGTAGATTCAAGGGTTTGAGTGGTGACATCCAAATCTCTGACAACAAATTTATCTC 1139
Query 1133 AGAGACATTTGAAATCGTGAATATTGGAAGAGAAAAACAGAGAAG 1177
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGAGACATTTGAAATCGTGAATATTGGAAGAGAAAAACAGAGAAG 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127825370764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5