BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477673
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-p... 2274 0.0
AT1G13440.1 | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phospha... 1365 0.0
> AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-phosphate
dehydrogenase C subunit 1 | chr3:1080950-1083530
FORWARD LENGTH=1543
Length=1543
Score = 2274 bits (1231), Expect = 0.0
Identities = 1372/1437 (95%), Gaps = 22/1437 (2%)
Strand=Plus/Plus
Query 1 CTCCACGTTCTTCTCTCTTTTAAATAGACC-CTTCACGG-ACCCTTCTCACTCACCTATC 58
|||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 1 CTCCACGTTCTTCTCTCTTTTAAATA-ACCTCTTCACGGAACCCTTCTCACTCACCTATC 59
Query 59 TCACTGTAAAATCTCTCTCTGTGAATCTCATCTTCAACCTCTCTTAC-ACACTCGCGTTT 117
||||| ||||||||||||||| |||||||||||||||||||| | | | |||| |||||
Sbjct 60 TCACTCTAAAATCTCTCTCTGCCAATCTCATCTTCAACCTCTC-T-CTA-ACTCTCGTTT 116
Query 118 TCGATTCAAACAATGGCTGACAAGAAGATTAAGATCGGAATCAACGGATTCGGAAGAATC 177
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 117 TCGATTC-TACAATGGCTGACAAGAAGATTAGGATCGGAATCAACGGATTCGGAAGAATT 175
Query 178 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAAC 237
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 176 GGTCGTTTGGTTGCTAGAGTTGTTCTCCAGAGGGACGATGTTGAGCTCGTCGCTGTCAAC 235
Query 238 GACCCCTTCATCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGT 297
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 236 GACCCCTTCATCACTACTGAGTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGT 295
Query 298 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 355
Query 358 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 415
Query 418 GACTATGTTGTTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTG 477
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 416 GACTACGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTG 475
Query 478 AAGGGTGGGGCCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTT 537
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 476 AAGGGTGGTGCCAAGAAGGTTGTTATCTCTGCCCCCAGCAAAGACGCTCCAATGTTTGTT 535
Query 538 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGC 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 536 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATTGTCTCCAACGCTAGCTGC 595
Query 598 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAA 657
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 596 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATTGTTGAG 655
Query 658 GGTCTTATGACAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCA 717
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 656 GGTCTTATGACTACAGTCCACTCAATCACTGCTACTCAGAAGACTGTTGATGGGCCTTCA 715
Query 718 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 775
Query 778 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCCCTTAACGGAAAGTTGACCGGCATGTCT 837
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 776 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCTCTTAACGGAAAGTTGACTGGAATGTCT 835
Query 838 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 895
Query 898 GCTACCTATGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGA 957
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 GCTACCTACGATGAAATCAAAAAGGCTATCAAGGAGGAATCCGAAGGCAAACTCAAGGGA 955
Query 958 ATTCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCG 1017
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 ATCCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGCGACAACAGGTCG 1015
Query 1018 AGCATATTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCA 1077
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1016 AGCATTTTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAATTGGTGTCA 1075
Query 1078 TGGTACGACAACGAATGGGGTTACAGTTCTCGAGTGGTCGACTTGATCGTTCACATGTCA 1137
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1076 TGGTACGACAACGAATGGGGTTACAGTTCCCGTGTGGTCGACTTGATCGTCCACATGTCA 1135
Query 1138 AAGGCCTAAGCTAAGAAGCAGATCTCGAACGACGAGG-AGTGGAAAGTCATCTGTTCATC 1196
||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 1136 AAGGCCTAAGCTAAGAAGCAGATCTCGAATGAT-AGGGAGTGGAAAGTCATCTGTTCATC 1194
Query 1197 CTCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAACCCttt 1256
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1195 CCCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAAC--TTT 1252
Query 1257 ttttttttttttGGTTTTCTTAATTCTCATTCATGTGAGTTGATGGGAGTTTGTAGACCG 1316
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1253 TTTTTTTTTT--GGTTTTCTTAATTCTCATTCATGTGAGGTGATGGGAGTTTGTAGACCG 1310
Query 1317 GTGTTTTACTG-AAGCCCTTTCGtttttggcttttgatatattgagtta-c-ttatggtt 1373
|||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1311 ATGTTTTACTGGAAGCCCTTT-GTTTTTGGCTTTTGATATATTGAGTTAACGTTATGGTT 1369
Query 1374 tttca-ttttgtctc-acttctctttttttCTATATACTAAATCAAATCTGAACGAA 1428
|| || |||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct 1370 TT-CAATTTTGT-TCCACTTCTCTTTTTAACTATATACTAAATCAAATCTGAACGAA 1424
> AT1G13440.1 | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate
dehydrogenase C2 | chr1:4608196-4610647 REVERSE LENGTH=1439
Length=1439
Score = 1365 bits (739), Expect = 0.0
Identities = 933/1027 (91%), Gaps = 12/1027 (1%)
Strand=Plus/Plus
Query 129 AATGGCTGACAAGAAGATTAAG-ATCGGAATCAACGGATTCGGAAGAATCGGTCGTTTGG 187
||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||
Sbjct 153 AATGGCTGACAAGAAGA-TCAGAATCGGAATCAACGGTTTCGGAAGAATCGGTCGTTTGG 211
Query 188 TTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAACGACCCCTTCA 247
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 212 TTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTTAACGATCCTTTCA 271
Query 248 TCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGTCAATGGAAAC 307
||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
Sbjct 272 TCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGTCAGTGGAAGC 331
Query 308 ACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAGCCAGTCACTG 367
|| |||| || ||| | |||||||| || || ||||||||||||||||||||||||||||
Sbjct 332 ACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAGCCAGTCACTG 391
Query 368 TTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTATGTTG 427
||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 392 TTTTCGGCATCAGGAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTG 451
Query 428 TTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTGAAGGGTGGGG 487
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 452 TTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTGAAGGGTGGTG 511
Query 488 CCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTTGTTGGTGTCA 547
| || |||||||||||||||||||| |||||||| || |||||||| |||||||||||||
Sbjct 512 CTAAAAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCGCCCATGTTCGTTGTTGGTGTCA 571
Query 548 ACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGCACCACTAACT 607
|||||||||| |||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 572 ACGAGCACGAGTACAAGTCTGACCTTGACATTGTTTCCAACGCTAGTTGCACCACTAACT 631
Query 608 GCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAAGGTCTTATGA 667
|||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||||
Sbjct 632 GCCTTGCTCCTCTTGCCAAGGTTATTAATGACAGGTTTGGCATTGTTGAGGGACTCATGA 691
Query 668 CAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCAATGAAGGACT 727
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 692 CCACTGTCCACTCTATCACTGCTACTCAGAAGACAGTTGATGGTCCATCAATGAAGGACT 751
Query 728 GGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGAGCTGCCAAGG 787
|||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 752 GGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGTGCCGCCAAGG 811
Query 788 CTGTCGG-AAAGGTGCTT-CCAGCCCTTAACGGAAAGTTGACCGGCATGTCTTTCCGTGT 845
|||| || |||| || || ||| |||| || ||||| |||||||| ||||||||||||||
Sbjct 812 CTGTTGGGAAAG-TG-TTGCCATCCCTCAATGGAAAATTGACCGGAATGTCTTTCCGTGT 869
Query 846 CCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTA 905
|||||||||||||||||||||||||| || || || ||||| ||||||||||| || ||
Sbjct 870 TCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATA 929
Query 906 TGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGAATTCTTGG 965
|| |||||||| ||||| |||||||||||||||||||||||| | ||||||||| ||||
Sbjct 930 CGACGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAAATGAAGGGAATT-TTGG 988
Query 966 -ATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCGAGCATAT 1024
|||||| |||||||||||||| || || ||||| ||||||||||||||||| ||||| |
Sbjct 989 GATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGGTCAAGCAT-T 1047
Query 1025 TT-GACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCATGGTAC 1083
|| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1048 TTCGATGCCAAGGCTGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCATGGTAC 1107
Query 1084 GACAACGAATGGGGTTACAGTTCTCGAGTGGTCGAC-TTGATCGTTCACATGTCAAAGGC 1142
|||||||||||||||||||||||||| || || ||| || ||||||||||||||||||||
Sbjct 1108 GACAACGAATGGGGTTACAGTTCTCGTGTCGTTGACCTT-ATCGTTCACATGTCAAAGGC 1166
Query 1143 CTAAGCT 1149
|||||||
Sbjct 1167 CTAAGCT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5