BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477674
Length=2266
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2743 0.0
> AT3G04130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1083974-1086385 FORWARD LENGTH=2225
Length=2225
Score = 2743 bits (1485), Expect = 0.0
Identities = 1720/1832 (94%), Gaps = 21/1832 (1%)
Strand=Plus/Plus
Query 1 CAGTTGAAGAACCCTGTTCTGGGTTTTAGATTTGATGTCTTGGCTTATTCAAAATCGCAT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 25 CAGTTGAAGAACCCTGTTCTGGGTTTTAGATTTAATGTCTTGGCTTATTCAAAATCGCAT 84
Query 61 TGGAAACACCTTGTTACGCCTTAAACCTTCTTCGTCTTCTATCGCTATTACCTCTACGTT 120
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 85 TGGAAACACCTTGTTACGCCTTAATCCTTCTTCGTCTTCTATCGCTATTTTCTCTACGTT 144
Query 121 CATCAAGAATCTTTCTACAGCCTCGGAGCAATTACCT------CTTGATGAATCTTCACA 174
||||||||||| ||||| || ||||||||||||||| |||||||||| ||||||
Sbjct 145 TATCAAGAATCTCTCTACTGCTTCGGAGCAATTACCTGAGACACTTGATGAATATTCACA 204
Query 175 GTCTGAGGAGATATGGAATGTTATCGTAGGTAGAGACGGTGATAGAGATAGTGAAGATGA 234
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 205 GTCTGAGGAGATATGGAATGTTATTGTAGGTAGAGACGGTGATAGAGATAGTGAAGATGA 264
Query 235 TGTGTTTAAACGTCTATCTAACGATGAGATATGTAACAGAGTTAATCTCTCTGATGGTTT 294
||| |||||||||||||||| |||||| || ||||| ||||| ||||| |||||||||||
Sbjct 265 TGTTTTTAAACGTCTATCTAGCGATGAAATCTGTAAAAGAGTCAATCTTTCTGATGGTTT 324
Query 295 GGTTTATAAGCTGCTTCATAGGTTTAGAGATGATTGGAAATCTGCGCTTGGTGTTTTGAA 354
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 325 GGTTCATAAGCTGCTTCATAGGTTTAGAGATGACTGGAGATCTGCGCTTGGTATTTTGAA 384
Query 355 ATGGGCTGAGTCTTGTAAAGGGCATAAACATTCGAGTGATGCTTATGATATGGCGGTGGA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 ATGGGCTGAGTCTTGTAAAGGGCATAAACATTCGAGTGATGCTTATGATATGGCTGTGGA 444
Query 415 TATTCTCGGCAAGGCGAAGAAATGGGATCGGTTGAAGGTGTTTGTTGAGAGAATGAGAGG 474
||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||
Sbjct 445 TATTCTCGGCAAGGCGAAGAAATGGGATCGGATGAAGGAGTTTGTGGAGAGAATGAGAGG 504
Query 475 AGATAAGCTTGTTACTTTGAATACGA-TTGCTAAGATCATGAGGAGATTTGCTGGTGCAG 533
|||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 505 AGATAAACTTGTTACTTTGAATAC-AGTTGCTAAGATCATGAGGAGATTTGCTGGTGCAG 563
Query 534 GGGAATGGGAAGAAGCTGTGGGGATATTTGATAAGTTGGGTGAATTTGGATTGGAGAAAA 593
|||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 564 GGGAGTGGGAAGAAGCTGTGGGAATATTTGATAGGTTGGGTGAATTTGGATTGGAGAAGA 623
Query 594 ACACGGAGTCGATGAATTTGTTGCTTGATACACTTTGCAAGGAGAAAAGAGTTGAGCAGG 653
|||||||||||||||| || |||| ||||| |||||||||||||||||||| |||||||
Sbjct 624 ACACGGAGTCGATGAACTTACTGCTCGATACGCTTTGCAAGGAGAAAAGAGTGGAGCAGG 683
Query 654 CTCGAGTAGTTTTGCTAGAGCTTAAGTCACACATTACACCAAATGCTCATACGTTTAATA 713
| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 684 CCCGAGTAGTTTTGCTACAGCTGAAGTCACATATTACACCAAATGCTCATACGTTTAATA 743
Query 714 TCTTCATTCACGGTTGGTGTAAGGCAAATAGAGTTGAGGAAGCTCTTTGGACGATCCAAG 773
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TCTTCATTCATGGTTGGTGTAAGGCAAATAGAGTTGAGGAAGCTCTTTGGACGATCCAAG 803
Query 774 AGATGAAAGGCCATGGATTTCGTCCTTGTGTTATTAGCTATACGACGATTATAAGGTGTT 833
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGATGAAAGGTCATGGTTTTCGTCCTTGTGTTATTAGCTATACGACGATTATAAGGTGTT 863
Query 834 ATTGCCAGCAGTCCGAGTTTGTCAAGGTCTATGAGATGCTAAGTGAAATGGAAGCAAATG 893
|||||||||||| |||||| | ||||||||||| ||||||||||| |||||||| ||||
Sbjct 864 ATTGCCAGCAGTTTGAGTTTATTAAGGTCTATGAAATGCTAAGTGAGATGGAAGCTAATG 923
Query 894 GGTCTCCTCCAAATTCTATTACTTACACAACTATTATGTCTTCTCTTAATGCACAGAAAG 953
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GGTCTCCTCCGAATTCTATTACTTACACAACTATTATGTCTTCTCTTAATGCACAGAAAG 983
Query 954 AGTTTGAGGAGGCTTTACGGGTAGCTACAAGGATGAAAAGATCTGGTTGTCAACCCGATT 1013
|||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||
Sbjct 984 AGTTTGAGGAGGCTTTACGGGTTGCTACAAGGATGAAAAGATCCGGCTGTAAACCCGATT 1043
Query 1014 CTCTTTTCTACAACTGTTTGATTCACACTCTTGCTCGATCTGGTCGGTTAGAAGAAGCTG 1073
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1044 CTCTTTTCTACAACTGTTTGATTCACACGCTTGCTCGAGCTGGTCGGTTAGAAGAAGCTG 1103
Query 1074 AGCGGGTTTTCAGAGTCGAGATGCCAGAGCTTGGTGTTTCCATTAATACATCCACCTACA 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1104 AGCGGGTTTTCAGAGTCGAGATGCCAGAGCTTGGTGTTTCCATTAATACATCTACCTATA 1163
Query 1134 ACTCCATGATTGCTATGTATTGTCATCATGATGAGGAAGATAAGGCGATTGAGCTTCTCA 1193
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1164 ACTCTATGATTGCTATGTATTGTCATCACGATGAGGAAGATAAGGCGATTGAGCTTCTCA 1223
Query 1194 AGGAAATGGAAAGTTCAAACCTTTGTAATCCCGATGTTCATACGTATCAACCCCTGCTGA 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 AGGAAATGGAAAGTTCAAACCTTTGTAATCCCGATGTTCATACGTATCAACCCCTGCTGA 1283
Query 1254 GATCTTGTTTTAAGAGAGGAGATGTTGTTGAGGTTGGGAAATTATTGAAAGATATGGTGA 1313
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1284 GATCTTGTTTTAAGAGAGGAGATGTTGTTGAGGTTGGGAAACTATTGAAAGAGATGGTGA 1343
Query 1314 CTAAACATCATCTCAGCCTTGATGAATCGACTTATACTTTTCTGATACAGAGGTTATGCA 1373
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1344 CTAAACATCATCTCAGCCTCGATGAGTCGACTTATACTTTTCTGATACAGAGGTTATGCA 1403
Query 1374 GAGCTAATATATGTGAGTGGGCGTATTGTCTATTCGAAGAGATGATTAGCCAAGATATCA 1433
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 GAGCTAATATGTGTGAGTGGGCGTATTGTCTATTCGAAGAGATGATTAGCCAAGATATCA 1463
Query 1434 CGCCGAGGCACCGGACTTGTTTGCTGCTTTTGGAAGAGGTCAAGAAGAAGAATATGCATG 1493
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1464 CGCCGAGGCACCGCACTTGTTTGCTGCTCTTGGAAGAGGTCAAGAAGAAGAATATGCATG 1523
Query 1494 AATCCGCTGAGAGAATCGAACACATCATGAAGACTGTGAAACTTACTGCCCCTGTAAAGT 1553
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1524 AATCAGCTGAGAGAATCGAACACATTATGAAGACTGTGAAACTTACTGCACCTGTAAAGT 1583
Query 1554 GAGGTT-ATTAGTTATTACAATGGCTTGACTGTTGCTTAC-CAGATTGTGATGAGAAGTG 1611
|||||| ||||||||||| | | |||||||||| ||| | ||||||| |||||||||||
Sbjct 1584 GAGGTTTATTAGTTATTATGACGACTTGACTGTTACTT-CGCAGATTGGGATGAGAAGTG 1642
Query 1612 GTCTCTTCCTGCTTGAGAAAGAA-ACAAGACCGGACCATGCATAAAGATGGTCATTGTGT 1670
|||||||| |||||| ||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 1643 GTCTCTTCATGCTTGCGAAAGAAGACAAGACCAGATCATGCATAAAGATGTTCATTGTGT 1702
Query 1671 TGTTTATTCAAGCACATTGTAGTGTAGATTTCAAGTTCTTTGGTCAATGCATA---A--- 1724
||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 1703 TGTTTATTCAACCACATTGTAGTGTAGATTTCAAGTTCGTTGGTCAATGGATATGGACAA 1762
Query 1725 GAAACTCGGACTTCGAATTCAAGAAGAGTTGTTAAGATTTGGAACTCTGGAGTTGATTGA 1784
|||||| |||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 1763 GAAACTTGGACTTCGTATTCATGAAAAGTTGTTAAGATT-GGAACTCTGGAGTTGATTGA 1821
Query 1785 TTCTGACACAATCTTGATGATAAGAAG-TTAT 1815
| |||||||| |||||||||||||| | ||||
Sbjct 1822 T-CTGACACATTCTTGATGATAAGAGGCTTAT 1852
Score = 472 bits (255), Expect = 9e-132
Identities = 340/377 (90%), Gaps = 22/377 (6%)
Strand=Plus/Plus
Query 1899 AGGATTATTCACATCAAGACTAATTTAT-GG-GAGTGTACATAA--GTGGGATCCAAGA- 1953
||| |||||||||||||||||||||||| || |||| |||| || |||||||||||||
Sbjct 1845 AGGCTTATTCACATCAAGACTAATTTATGGGAGAGTTTACACAAGTGTGGGATCCAAGAG 1904
Query 1954 -ttttttttttttttAATGAGCATTGAGTTTATAGACAAATACATGTGCATTAAGATGCG 2012
| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1905 CATATTTTTTTTTGTAATGAGCATTGAGTTTATGGACAAATACATGTGCATTTGGATGCG 1964
Query 2013 TCCACACTTCACAGTTCACACCGAC--ATAGGTAGATCCATATTACCCCaaacaaaacaa 2070
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1965 TCCACACTTCACAGTTCACACCGACAGAAAGGTAGATCCATATTACCCCAAACAAAACAA 2024
Query 2071 aatttatagttttggg-tatttttgaaattattattaaaataaaataaaataaaattGAG 2129
||| ||| ||||||| |||||||| || |||||| ||| | |||||||| |||||
Sbjct 2025 AATATAT-TTTTTGGGATATTTTTG-AA--ATTATT--AAT---AGAAAATAAATTTGAG 2075
Query 2130 TAGTCTTCTTCAACTTCATAATGATGGTTAAGCTTTAACTACGAATTATTGATTAGATAT 2189
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2076 TAGTCTTCTTCAACTTCATAA-GATGGTTAAGCTTTAACTACGAATTATTGATTAGATAT 2134
Query 2190 TATTAATAATAAGGGCCCTCAAATGTTAGCTGCCACAAGTGGGCACTTTTTCTTTGGTCT 2249
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135 TATTA-T--TAAGGGCCCTCAAATGTTAGCTGCCACAAGTGGGCACTTTTTCTTTGGTCT 2191
Query 2250 ACATTATTCGAAATTTA 2266
||||| |||||||||||
Sbjct 2192 ACATTGTTCGAAATTTA 2208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112449220800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5