BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477678
Length=2456
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3118 0.0
> AT3G04160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature
embryo stage, petal differentiation and expansion stage,
E expanded cotyledon stage, D bilateral stage. | chr3:1091147-1094346
REVERSE LENGTH=2610
Length=2610
Score = 3118 bits (1688), Expect = 0.0
Identities = 2253/2513 (90%), Gaps = 90/2513 (4%)
Strand=Plus/Plus
Query 1 CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTTCCTCACTATCAACACCCTAATCCG 60
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 36 CCGTCGCCGGAACTCATGGATCGACCACCGTCGTTGCCACACTATCAAAACCCTAATCCG 95
Query 61 AACTTCTTCCACCACGT-TCCTCCTCCAAATCCTAATCCTAATTTCTTCTTCCGACCTCC 119
||| ||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 96 AACCTCTTCTACCAC-TATCCTCCTCCAAATTCTAATCCTAATTTCTTCTTCCGACCTCC 154
Query 120 TCCACCTCATCTTCAAAATCCTAACAATTACTCCATCGCTCCTCCGTCTCCGCCGCCGAT 179
|||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 155 TCCACCTCCTCTTCAAAATCCTAACAATTACTCCATCG-T--TCCGTCTCCGCCGCCGAT 211
Query 180 TCGCGAGCTCTCCGGTACACTCACTTCTTTACAATCCCTGTTGTCGGAATGTCAAAGAAC 239
|||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 212 TCGCGAGCTCTCCGGTACACTCTCTTCTTTAAAATCCCTGTTGTCAGAATGTCAAAGAAC 271
Query 240 CTTAGATTCCCTCTCGCAAAATCTAGCTTTAGACCACTCTTCTCTTCTCCACAAGGACGA 299
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 272 CTTAGATTCTCTCTCGCAAAATCTAGCTTTAGATCACTCTTCTCTTCTCCAGAAGGACGA 331
Query 300 AAATGGCGGTTTCGTTCGTTGCCCTTTCGATTCAAATCACTTAATGCCACCTGAAGCTCT 359
||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 332 AAATGGCTGTTTTGTTCGTTGCCCTTTTGATTCAAATCACTTTATGCCACCTGAAGCTCT 391
Query 360 CTTTCTTCATTCACTTCGTTGCCCAAATCCTCTTGACCTCACTCATCTTCTTGGATCCTT 419
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 392 CTTTCTTCATTCACTTCGTTGCCCAAATACTCTTGACCTCATTCATCTTCTTGAATCCTT 451
Query 420 TAGTTGTTACCGGAACACGCTCGAGTTACCATGTGAACTACAGTTGAATAA---TAACGG 476
|||| ||||||||||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 452 TAGTAGTTACCGGAACACGCTCGAGTTACCATGTGAACTACAGTTGAACAACGGTGATGG 511
Query 477 TGATCTCTGTGTCTCTTTAGATGACTTGGCTGATTTTGGGAGAAATTTCTTCTACAGAGA 536
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 512 TGATCTCTGTATCTCTTTAGATGACTTGGCCGATTTTGGGAGCAATTTCTTCTACCGAGA 571
Query 537 TTGTCCAGGAGCTGTTAACTTCTCTGAGCTCGATGGTAAAAAGCCAACTTTAACACTTCC 596
|||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||
Sbjct 572 TTGTCCAGGAGCTGTTAAATTCTCTGAGCTCGATGGAAAAAAACGAACTTTAACACTTCC 631
Query 597 TAATGTTCTATCTGTGGAATGCAACGATTTTGTAGTTTCTGATGAGAAGGAG-AAAGGTA 655
| ||||||||||||||||||| | ||||||||||| |||||||||||||| | ||| | |
Sbjct 632 TCATGTTCTATCTGTGGAATGTAGCGATTTTGTAGGTTCTGATGAGAAGGTGAAAAAG-A 690
Query 656 GTATGTTGGATAAATGGTTAGGGA-TTTTACCGTCTGATCTCTGTGCAATAAAGAGTGAG 714
| | ||||||||||| ||| ||| | |||||||||||||| |||||||| |||| ||||
Sbjct 691 TTGTCTTGGATAAATGCTTA-GGAGTCTTACCGTCTGATCTTTGTGCAATGAAGAATGAG 749
Query 715 ATTAATCAATGGAGGGATTTCCCAAGTTCGTATTCCTATAGTGTTCTTTCTTCGATTGTG 774
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 750 ATTGATCAATGGAGGGATTTCCCAAGTTCGTATTCCTCTAGTGTTCTTTCTTCGATTGTG 809
Query 775 GGTTCAAAAGCGATTGCAACGAGCG-AGTTGAGGACATGGATTCTGGTTAAGTCGACGAG 833
|||||||||| | ||| || || | | ||||||| ||||||||||||||| ||||||||
Sbjct 810 GGTTCAAAAGTGGTTGAAATAAGTGCA-TTGAGGAAATGGATTCTGGTTAATTCGACGAG 868
Query 834 ATATGGTGTCATAATCGATACATTCATGAGGGATCATGTATTCTTGCTCTTTCGGTTGTG 893
||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 869 ATATGGTGTTATAATTGATACATTCATGAGGGATCATATATTCTTACTCTTTCGGTTGTG 928
Query 894 TCTCAAATCGGCTGTGAAAGAAGCTTGTAGA-TT--GATAGAGTCTGATGCTAATGCTGT 950
||||||||| |||||||||||||||||| || || ||| ||||||||||||| || |||
Sbjct 929 TCTCAAATCTGCTGTGAAAGAAGCTTGTGGATTTAGGATGGAGTCTGATGCTACTGATGT 988
Query 951 TGGTGAGAAGCAGATTATGAGCTGCAAAAGTAGAACATTTGAGTGTCCAGTCTTGATTCA 1010
||||||| || |||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 989 TGGTGAGCAGAAGATTATGAGCTGCAAGAGTAGTACATTTGAGTGTCCAGTCTTCATTCA 1048
Query 1011 AGTGTTGTCTTGGTTAGCTTCTCAACTTGCTGTCTTGTATGGAGAAGGAAATGGCAAGTA 1070
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1049 AGTCTTGTCTTGGTTAGCTTCTCAACTTGCTGTCTTGTATGGAGAAGGAAATGGGAAGTT 1108
Query 1071 TTTTGCTTTGGACATGTTTAAACAGTGCATAGTAGAATCTGCCTTTCGGGTAATGTTGTT 1130
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1109 TTTTGCTTTGGACATGTTTAAACAGTGCATAGTAGAATCTGCCTCTCAGGTAATGTTGTT 1168
Query 1131 TCAGTCAGAAGGAACAAGACCTAAATGCTCTGGAGTTCTCGAGGATTTGGATGATCCAAG 1190
| || ||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1169 CCGGTTAGAAGGAACTAGATCTAAATGCTCTGGAGTTGTCGAGGATTTGGATGATGCAAG 1228
Query 1191 CTTGAGTAATAAGGATGTGAAGATGGAGAAGCCCTTTGAAAATAGTTCAGGTGGGGAAGG 1250
||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 1229 GTTGAGAAATAAGGATGTGATCATGGAGAAGCCCTTTGAGAATAGTTCAGGTGGGGAATG 1288
Query 1251 TGGCAAAACTTTGGACAGTCCACAGGTGATTTCTGTGTCTCGTGTTGCAGCAGCTGTTGC 1310
|||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 1289 TGGCAAAACTTTGGACAGTCCACAGGTGATATCTGTGTCCCGTGTTTCAGCAGCTGTTGC 1348
Query 1311 AGCTTTGTATGAAAGATCCTTGCTTGAAGGAAAAATAAGGGCAGATCGATATGCCCAACC 1370
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1349 AGCTTTGTATGAAAGATCCTTGCTTGAAGAAAAAATAAGGGCAGTTCGATATGCCCAACC 1408
Query 1371 ACTAACGAGATATCAGCGGG-CGG--C-TGA--GC-TTGGTGTTATGACAGCTAAAGCTG 1423
|||||||||||||||||| | | || || || | ||| ||| || | | ||
Sbjct 1409 ACTAACGAGATATCAGCGCATCATTTCATGTTTGCATTTGAGTT-TGATTCCTCATGATG 1467
Query 1424 A-TGAGGAACGGAATAGACGTTGTAGCTACCGACCTATTATTGATCATGACGGTCTTCCG 1482
| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1468 TCTCTG-AACGGAATAGACGTTGTAGCTACCGACCTATTATTGATCATGATGGTCGTCCG 1526
Query 1483 AGACAACGCTCATCAACTCAGGATATGAATAAAATGAAGACAAGGGAAGAGCTTTTAGCA 1542
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1527 AGACAACGCTCATTAAATCAGGATATGGATAAAATGAAGACAAGGGAAGAGCTTTTAGCT 1586
Query 1543 GAAGAGAGAGATTATAAGCGTCGGAGAATGTCATACCGTGGAAAGAAGGTGAAACGAACG 1602
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1587 GAAGAGAGAGATTATAAGCGTCGTCGAATGTCATACCGTGGAAAGAAGGTGAAACGAACG 1646
Query 1603 CCTCGACAGGTGTTACATGATATAATAGAAGAATATACAGAAGAAATTAAGTTAGCAGGA 1662
||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1647 CCTCGACAGGTCTTACATGATATGATAGAAGAATATACAGAAGAAATTAAGCTAGCAGGA 1706
Query 1663 GGTATTGGGTGTTTTGAGAAAGGAATGCCATTACAATCCCCGTCTCCTATAGGCAGCGAT 1722
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1707 GGTATTGGATGTTTTGAGAAAGGAATGCCATTACAATCCCGGTCTCCTATAGGCAACGAC 1766
Query 1723 CAGAAAGAAAGTGACTTTGGATACAATACTGC-ACCACCATATAAGCAATGGAAAGGAGA 1781
||||||||||||||||||||||||| || | | | || || |||||||||||||||||||
Sbjct 1767 CAGAAAGAAAGTGACTTTGGATACAGTA-TACCATCAACAGATAAGCAATGGAAAGGAGA 1825
Query 1782 GAACCGTGCAGCTATTGAATATCCAATGGATGATAGA-AACAATTCAGATAAAGTAAAGC 1840
||||||||||| ||||||||||||||| ||| ||||| || |||||||||||||||||||
Sbjct 1826 GAACCGTGCAGATATTGAATATCCAATCGATAATAGACAA-AATTCAGATAAAGTAAAGC 1884
Query 1841 GGCATGTTGAGTATGATTCAAGTAGCTCGCAGAGACAACAGAGTCACAGATCATATAAGC 1900
| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1885 GACATGATGAGTATGATTCAGGTAGCTCGCAGAGACAGCAGAGTCACAGATCATATAAGC 1944
Query 1901 ACGGTGATCGAAGAGATGACAAGCACAGTGATCGTAGA--G-A---------TGA-C-AA 1946
|| ||||||||||||||||||||| | ||||||| ||| | | ||| | ||
Sbjct 1945 ACAGTGATCGAAGAGATGACAAGCTCCGTGATCGAAGAAAGGACAAGCACAATGATCGAA 2004
Query 1947 -A--T------T-CACAAGGAGCGAACGACATAGCCTTGAAAGGAAATCTTATCATCGAA 1996
| | | |||||||| | ||||||||||| ||||| || |||||||||| ||
Sbjct 2005 GAGATGACGAATTCACAAGGACCAAACGACATAGCATTGAAGGGGAATCTTATCA---AA 2061
Query 1997 ACCACAGATCATCTCGTGAGAAGAGTTCTTCAGATTATAAGACCAAAAGGGATGATCCTT 2056
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 ACTACAGATCATCTCGTGAGAAGAGTTCTTCAGATTATAAGACCAAAAGGGATGATCCTT 2121
Query 2057 ATGACCGCCGCAGTCGGGAACCTAGAAATCAAAATTCT-TTTGAAGATAGATACATACCA 2115
||||||||||||||| | ||||||| |||||||||| | |||||||||||||||||||||
Sbjct 2122 ATGACCGCCGCAGTCAGCAACCTAGGAATCAAAATT-TGTTTGAAGATAGATACATACCA 2180
Query 2116 ACAGAAAGGGAGTGAACTTAAAAGAAGTAAAAGTTTACCTGGAGCATCAGCAATTATGTG 2175
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2181 ACAGAAAAAGAGTGAACTTAAAAGAAGTAAAAGTGTACCTGGAGCATCAGCAATTATGTG 2240
Query 2176 TGAATCCGTATCCTCTTTTGTATCCTTAACCAAtttttttCCTTCT-TTGATGCATCTAA 2234
||||||||||||||||||||||||||||||||| ||||| |||||| || || ||||| |
Sbjct 2241 TGAATCCGTATCCTCTTTTGTATCCTTAACCAAATTTTTACCTTCTCTT-ATACATCTCA 2299
Query 2235 GTGTTAACCAAATGTTGGTGATATTCTCAAATTTCCAGCTATCTAGATTCACTGTAGTTG 2294
| | | ||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2300 -------C----T-T-GGTGATACTCTCAAATTTCCAGCTGTCTAGATTCACTGTAGTTA 2346
Query 2295 CCATTCCTGTCT-GTCTATATATTTTCAGTTTCTTTTTTCTTCTTTGGTTGTGACAGATT 2353
||||||| |||| | |||| |||||||||||||||| | ||| |||||||||||||||
Sbjct 2347 CCATTCCCGTCTAG---ATATGTTTTCAGTTTCTTTTT-CGTCTATGGTTGTGACAGATT 2402
Query 2354 GAAGTTAATTCAAGTATGTTCTTGCTATGAACAAGCCATGAGCCATGAGATTGCTGGGAA 2413
|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 2403 GAAGTTAATTGAAGTATGTTTTTGCTGTGAACAAGCCATGAGCCGTGAGATTGCTGGGAA 2462
Query 2414 GAAGTGCCAAACTCCA----T------AATTGTGAGAGACTGCAATGTTTTAA 2456
||| || |||||||| | ||||||||||||||||||||||||||
Sbjct 2463 GAAATGGTAAACTCCACAAGTGTTTGTAATTGTGAGAGACTGCAATGTTTTAA 2515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121855504547
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5