BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477679
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04180.1 | Symbols: | RmlC-like cupins superfamily protein ... 1090 0.0
AT3G04190.1 | Symbols: | RmlC-like cupins superfamily protein ... 1075 0.0
AT3G04170.1 | Symbols: | RmlC-like cupins superfamily protein ... 442 2e-123
> AT3G04180.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1097475-1098422 REVERSE LENGTH=819
Length=819
Score = 1090 bits (590), Expect = 0.0
Identities = 686/731 (94%), Gaps = 12/731 (2%)
Strand=Plus/Plus
Query 1 AGaaaaaaaaaaaaaTGGAAGGTCTTCTGCACTTTCTTTTAGCTAAAATCATTTTGGTGG 60
||| ||||||| ||||||||||||| |||| ||||| ||||| |||||||||||| |||
Sbjct 94 AGAGAAAAAAATTAATGGAAGGTCTTTTGCAGTTTCTATTAGCCAAAATCATTTTGTTGG 153
Query 61 CTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTTG 213
Query 121 CCACCAACGAAACTAATGGAGTTTATGTAAATGGAAAGTTCTGCAAAGATCCAAAATGTG 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 214 CCACCAACGAAACTAATGGAGTTTATGTAAATGGAGAGTTCTGCAAAGATCCAAAACGTG 273
Query 181 TAACGACGAATGATTTCTATACTTCCGGCTTAAACGTCCCCGGAAACACCAGCATCGGTC 240
|||| || |||||||| |||||||||||| ||||||||||||||||||||| |||||| |
Sbjct 274 TAACAACCAATGATTTTTATACTTCCGGCCTAAACGTCCCCGGAAACACCATCATCGGGC 333
Query 241 CCGGCTCCA-AAATCACCGTCGTGGATGTCGAAAGAATGCCTGGTCTCAACACTCTTGGG 299
||||| | | ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 334 CCGGCGCTAGAAA-CACCGTCGTGGATGTCGAAAGACTGCCTGGTCTCAACACTCTTGGG 392
Query 300 GTCGACATTGCCCGCTATGACTTCGCCCCGGGTGGTCTAGACCCACCTCACACACACCCG 359
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 393 GTCGACATTGCCCGCTATGACTTTGCCCCGGGCGGTCTAGACCCACCTCACACACACCCG 452
Query 360 CGTGGCAGCCAGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGATTTGTGTCGTCG 419
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 453 CGTGGCAGCCAGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGTTTTGTGTCGTCA 512
Query 420 AATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATGTATTTGTGTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATGTATTTGTGTTT 572
Query 480 CCCAAAGGTTTGATACATTTTCATGCGAATTTTGGGAAGACAAATGCGGTTGTGATTTCT 539
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 573 CCCAAAGGTTTGATACATTTTCATGCGAATATTGGGGAGACAAATGCCGTTGTGATTTCT 632
Query 540 GCGGCTGGGAGCCAAGAGCCCGGTAGGATCATAATAGGTGATGCGGTTTTCGGATCGAAA 599
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 633 GCGGGTGGGAGCCAAGACCCCGGTAGGATCATAATAGGTGATGCGGTTTTCGGATCAAAA 692
Query 600 CCTTTGATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACTTGAACAAAGTGAAA 659
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 693 CCTTTGATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACTACAACAAAGTGAAA 752
Query 660 TATCTTCAGGCAGTGTTTTCTTGAATGACATACGTAATTATATAGCCTACGAGAATAATG 719
|||||||||||||||||||||||| |||||||| || | || || | || | |||||
Sbjct 753 TATCTTCAGGCAGTGTTTTCTTGA-TGACATAC-TAGCT-TA-AG---A-GA-A-TAATG 802
Query 720 ATAAAATATAG 730
|||||||||||
Sbjct 803 ATAAAATATAG 813
> AT3G04190.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1101878-1102763 REVERSE LENGTH=767
Length=767
Score = 1075 bits (582), Expect = 0.0
Identities = 680/726 (94%), Gaps = 11/726 (2%)
Strand=Plus/Plus
Query 8 aaaaaaaaTGGAAGGTCTTCTGCACTTTCTTTTAGCTAAAATCATTTTGGTGGCTTTAGC 67
|||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 10 AAAAAAAATGAAAGGTCTTCTGCATTTTCTTTTAGCCAAAATCATTTTGTTGGCTTTAGC 69
Query 68 ATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTTGCCACCAA 127
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 70 ATCTTCGTTTGTATATTGTTACGAACCATCTCCTCTTCAAGACTACTGTGTTGCCACCAA 129
Query 128 CGAAACTAATGGAGTTTATGTAAATGGAAAGTTCTGCAAAGATCCAAAATGTGTAACGAC 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 130 CGAAACTAATGGAGTTTATGTAAATGGAAAGTTCTGCAAAGATCCAAAATGTGTAACGGC 189
Query 188 GAATGATTTCTATACTTCCGGCTTAAACGTCCCCGGAAACACCAGCATCGGTCCCGGC-T 246
||||||||| || ||||||||| ||||||| |||||||| ||||||| |||||| ||| |
Sbjct 190 GAATGATTTTTACACTTCCGGCCTAAACGTTCCCGGAAATACCAGCACCGGTCCGGGCGT 249
Query 247 CCAAAATCACCGTCGTGGATGTCGAAAGAATGCCTGGTCTCAACACTCTTGGGGTCGACA 306
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 250 C-AAAATCACCGTCGTGGATGTCAAAAGAATGCCTGGTCTCAACACTCTTGGGGTCGACA 308
Query 307 TTGCCCGCTAT-GACTTCGCCCCGGGTGGTCTAGACCCACCTCACACACACCCGCGTGGC 365
|||||||| || |||||||||||||| |||||| ||||||||||||| ||||| ||||||
Sbjct 309 TTGCCCGC-ATTGACTTCGCCCCGGGCGGTCTATACCCACCTCACACCCACCCACGTGGC 367
Query 366 AGCCAGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGATTTGTGTCGTCGAATGAA 425
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 368 AGCGAGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGGATTTGTGTCGTCGAACGAA 427
Query 426 TACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATGTATTTGTGTTTCCCAAA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGATGTATTTGTGTTTCCCAAA 487
Query 486 GGTTTGATACATTTTCATGCGAATTTTGGGAAGACAAATGCGGTTGTGATTTCTGCGGCT 545
||||||||||| |||||||||||| |||| ||||||||||||||||||||| |||| ||
Sbjct 488 GGTTTGATACAATTTCATGCGAATATTGGAAAGACAAATGCGGTTGTGATTGCTGCAACT 547
Query 546 GGGAGCCAAGAGCCCGGTAGGATCATAATAGGTGATGCGGTTTTCGGATCGAAACCTTTG 605
||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 548 GGGAGCCAAAACCCCGGTAGGATCATAATAGGTAATGCGGTTTTCGGATCGAAACCTTTG 607
Query 606 ATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACTTGAACAAAGTGAAATATCTT 665
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 608 ATTGATCCCAAGGTTTTGGCTAAAGCTTTTGCGTTGGACTTCAACAAAGTGAAATATTTT 667
Query 666 CAGGCAGTGTTTTCTTGAATGACATACGTAATTATATAGCCT-ACGAGAATAATGATAAA 724
||||||||||| |||||| ||||||||||||||| |||| | | ||||||| || ||
Sbjct 668 CAGGCAGTGTTCTCTTGA-TGACATACGTAATTA----GCCTCA-GTGAATAATTATGAA 721
Query 725 ATATAG 730
||||||
Sbjct 722 ATATAG 727
> AT3G04170.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1094621-1095665 REVERSE LENGTH=877
Length=877
Score = 442 bits (239), Expect = 2e-123
Identities = 555/700 (79%), Gaps = 51/700 (7%)
Strand=Plus/Plus
Query 2 GaaaaaaaaaaaaaTGGAAGGT-CTTCTGCACT-TTCTTTTAGCTAAAATCATTTTGGTG 59
|||||| ||||| ||| || | ||| | || | || || ||||||||||||||||| ||
Sbjct 37 GAAAAACAAAAAGATGAAATATCCTT-TTCAGTGTT-TTCTAGCTAAAATCATTTTGCTG 94
Query 60 GCTTTAGCATCTTCGTTTGTATATTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 119
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 95 GCTTTAGCATCTTCGTTTGTCTCTTGTTACGACCCATCTCCTCTTCAAGACTACTGTGTT 154
Query 120 GCCA-CCAACGAAACTAATGGAGTTTAT-GTAAATGGA-AAGTTCTGCAAAGATCCAAAA 176
||| || ||||| || ||||||| | ||||||||| || ||||||||||||||||||
Sbjct 155 GCCGTCCC-CGAAAAAAACGGAGTTT-TCGTAAATGGAGAA-TTCTGCAAAGATCCAAAA 211
Query 177 -TGTGTAACGA-C-GAATGATTTCTATACTTCCGGC-TTAAACGTCCCCGGAAACACCAG 232
| ||||| | | || |||||||| | |||| ||| |||| | |||| ||||||||||
Sbjct 212 CTA-GTAAC-ATCAGA-TGATTTCTTTGCTTCTGGCCTTAA-CATCCCGGGAAACACCAA 267
Query 233 CAT-CGGTCCC-GGCTCCAAAATCACCGTCGTGGATGTCGA-AAGAATGCCTGGTCTCAA 289
|| || || |||||| | | ||| | || || | | || ||||||||
Sbjct 268 CAAACG--CCTTGGCTCCT---T-----T-GTGAACCCCGCTAATA-TCCCCGGTCTCAA 315
Query 290 CACTCTTGGGGTCGACATTGCCCGCTAT-GACTTCGCCCCGGGTGGTCTAGA-CCCACCT 347
|||||||||||||| ||| ||||| ||| ||||| ||||| ||||||||| | ||||||
Sbjct 316 CACTCTTGGGGTCGGCATCGCCCG-TATTGACTTTGCCCCTGGTGGTCTA-ATCCCACCG 373
Query 348 CACACACACCCGCGTGGCAGCC-AGATCTTCTTAGTCATGAAGGGCAAGCTTTTCGTTGG 406
|||| ||| || || | | || ||||| |||||||||| ||||| ||||| | || ||
Sbjct 374 CACATACATCCACGCGCCT-CCGAGATCATCTTAGTCATCAAGGGAAAGCTCCTAGTCGG 432
Query 407 ATTTGTGTCGTCGAATGAATACAACTACACGCTCTTCACCAAAGTTCTTTATCCGGGAGA 466
||||| |||||||| || ||||||||||| |||||| ||||| |||||||||| |||||
Sbjct 433 TTTTGTATCGTCGAACGACTACAACTACACACTCTTCTCCAAAATTCTTTATCCCGGAGA 492
Query 467 TGTATTTGTGTT-TCCCAAAGGTTTGATACATTTTCATGCGAATTTTGGGAAGACAAATG 525
||| ||||| | ||||| || ||| |||| |||||||| || | |||||||||||||
Sbjct 493 TGTGTTTGT-TCATCCCATCGGATTGGTACAATTTCATGCAAACATAGGGAAGACAAATG 551
Query 526 CGGTTGTGATTTCTGCGGCTGGGAGCCAAGAGCCCGGT-AGGATCATAA-TAGGTGATGC 583
|||||| |||| |||| |||||||||| | || ||| | ||| | ||||||||||
Sbjct 552 CGGTTGCGATTGGGGCGGTTGGGAGCCAAAATCCTGGTTAT-ATC-TCGGTAGGTGATGC 609
Query 584 GGTTTTCGGATCGAAACCTTTGATTGATCCCAAGG-TTTTGGCTAAAGCTTTTGCGTTGG 642
|||||||| ||||| ||| |||||| ||||| | ||||||||||||||||||||||||
Sbjct 610 AGTTTTCGGGTCGAAGCCTCCGATTGA-CCCAAAGATTTTGGCTAAAGCTTTTGCGTTGG 668
Query 643 ACTTGAACAAAGTGAA-ATATCTTCAGGCA-GTGTTTTCT 680
|| | || | ||| || |||||||| | | |||||||||
Sbjct 669 ACATCAATATAGT-AAGATATCTTC-GAAAAGTGTTTTCT 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5