BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477682
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04210.1 | Symbols: | Disease resistance protein (TIR-NBS c... 1164 0.0
> AT3G04210.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr3:1105963-1108069 REVERSE LENGTH=1940
Length=1940
Score = 1164 bits (630), Expect = 0.0
Identities = 879/996 (88%), Gaps = 29/996 (3%)
Strand=Plus/Plus
Query 470 CTTAGTTGGGATGGAGGCTCATATGAAAAAGTTGGAACTAATGTTATACCTAGATTTGAA 529
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||
Sbjct 781 CTTAGTTGGGATGGAGGATCATATGAAAAAATTGGAACGAATGTTATACCTAGATCTGAA 840
Query 530 TGATGTGAGGATGATAGGGATTTGGGGTCCTCCTGGGATTGGTAAGACCAGCATCGCCAG 589
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TGATGTGAGGATGATAGGGATTTGGGGTCCTCCTGGGATTGGTAAGACTTCCATCGCCAG 900
Query 590 AGTTTTATTTAGCAAACACTCTGACAGTTTCGACTTGAGTGTCTTTATGGAGAATGTCAA 649
|||||||||| | ||||| |||||||||||||| ||||||||||||||||||| |||| |
Sbjct 901 AGTTTTATTTCGAAAACATTCTGACAGTTTCGATTTGAGTGTCTTTATGGAGACTGTC-A 959
Query 650 AGGACGATATACAAGACCAGGTTGTGCGGATGAACACAGTCTTAAGCTGCACTTACATCA 709
||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 960 AGG--GTTATACAAGACCAGGTTGTTCGGATGAACACGGTCTTAAGCTGCACTTACAGCA 1017
Query 710 GCAGTTTCTGTCTCAAATATTCAACCAGAAGGATATAGAAGTTCCTCACTTAGGTGTTAT 769
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 1018 GCAGTTTCTGTCTCAAATATTCAACCAGAAGGATGTAGAAGTTCCTCACTTAGGAGTTGT 1077
Query 770 ACAAGACAGGTTAAGAGACAAGAGAGTGCTTGTTGTCCTTGATGACGTCGATCAGCCAGC 829
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 1078 ACAAGACAGGTTAAGAGACAAGAGAGTGCTTGTTGTGCTTGATGACGTTGATCAGTCAGC 1137
Query 830 ACAATTAGAAGCCATGGCCAAGGAAAATAAGTGGTTTGGTCCTGGAAGTCGGATTATTGT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1138 ACAATTAGAAGCCATGGCCAAGGAAAATAAGTGGTTTGGTCCTGGAAGTCGGATTATCAT 1197
Query 890 CACCACTCAAGGTCGAAGACTTTTGGAAGGACATGGAATCAAAGATATGTACAAGGTGGA 949
|||||| |||| ||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 1198 CACCACGCAAGATCGAAGACTTTTGAAAGCACATGGAATCAAAGATGTGTACAAGGTGGA 1257
Query 950 TTTTCCACCACCTCG-TGAAGCTTTTCAAATCTTCTGCATGGATGCTTTTGGTCAAGCCT 1008
||| ||||||||| | ||| ||||||||||||||||||||| ||||||||||| || |||
Sbjct 1258 TTTACCACCACCT-GATGATGCTTTTCAAATCTTCTGCATGTATGCTTTTGGTAAAACCT 1316
Query 1009 CTCCTAAACACGGTTTCGAGGAGCTTGCATGGGAAGCTACATACGTGTCTGGTATACACC 1068
|||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1317 CTCCAAAACATGGTTTCGAGGAGCTTGCATGGGAAGCTACATACCTTTCTGGTATACACC 1376
Query 1069 CTTCGGGTATAAGAAGTATGGGTTCTTATTTCCGGGGAATGTCAAAGCTGGAGTGGGCAG 1128
||||||| |||| ||||||||| |||||||||||| ||||||||| | |||||||| |
Sbjct 1377 CTTCGGGAATAAAAAGTATGGGCTCTTATTTCCGGAAAATGTCAAAACCGGAGTGGGTAA 1436
Query 1129 ACGCATTACTAAGGTTAAGGACTAATAACCCTGACTCTGGTTCTGTGAGGACCTACAAAA 1188
|||| |||| |||||||||||||| ||| | |||||||| ||| ||||||| ||| ||
Sbjct 1437 ACGCGTTACAAAGGTTAAGGACTAGTAAGCTTGACTCTGAATCTCCGAGGACCCACAGAA 1496
Query 1189 AAG-TCGGAA-TCAGAATCAGAAATGAAAAACAGAAGATTG-TGTCACGTATGATGAGCT 1245
| | || || | ||| | || |||| |||||||||||| | ||||| || | |||||
Sbjct 1497 A-GCTCATAAAT-AGATTAAGGAATGTAAAACAGAAGAT-GCTGTCAAATACGTTGAGC- 1552
Query 1246 CA-ATAAGGAGGAAACAAATAGCAGCAGCAGAAG-AAAGAGCTGCTAGTGTTTATGAAAG 1303
| ||||||| | | ||||||||| |||||| || ||| ||||||||||||||||||||
Sbjct 1553 CGTATAAGGAAGCACCAAATAGCATCAGCAGCAGCAAA-AGCTGCTAGTGTTTATGAAAC 1611
Query 1304 AACTATGAAAGA-G-G-TGGATTCTTCTC-CTGTGTCGTCT-ACTCGGGGACTTGCTGAA 1358
|| ||| ||||| | | ||||||| || | | | ||||| | | || |||||| ||||
Sbjct 1612 AAGTATAAAAGAAGAGGTGGATTCGTC-CGCGGAGTCGT-TGAATCATTGACTTGGTGAA 1669
Query 1359 GAA--A--GAAACTGATAGAGTTGAAGAACCACTTCGAAGGACATGAAAC--C-TGATCA 1411
||| | ||||||||||||||||||||||||| || ||| ||||||||| | ||||||
Sbjct 1670 GAAGTAAAGAAACTGATAGAGTTGAAGAACCACGTCCAAGAACATGAAACTACCTGATCA 1729
Query 1412 AACCACCAAAACGAAAGTATGTGCAATGAGTGATTT 1447
||||||||||||||||||||||||||||||||||||
Sbjct 1730 AACCACCAAAACGAAAGTATGTGCAATGAGTGATTT 1765
Score = 623 bits (337), Expect = 2e-177
Identities = 428/470 (91%), Gaps = 14/470 (3%)
Strand=Plus/Plus
Query 1 TTGCTTCACATAGCTCTCTAAACAATCTCTTTGTCCCTCTCTATACCATACGAATAATGG 60
|||||||| ||||||||||||| || |||||||| | |||||||| ||||||||||||||
Sbjct 9 TTGCTTCATATAGCTCTCTAAAAAAGCTCTTTGTTCGTCTCTATATCATACGAATAATGG 68
Query 61 ATTCTTATTTTTTCCTTGGCACTGTTGTTGTTGTTGCTCTTGCAATCTACACGCTTTTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATTCTTATTTTTTCCTTGGCACTGTTGTTGTTGTTGCTCTTGCAATCTACACGCTTTTGG 128
Query 121 GAATGCTATCTTTTATGGTTTATAGAAAATTCAGGTTCCATCTAGACAAGAA-AA-ACAT 178
||| ||||||||||||||||||||||||||||||| || | ||| ||||| || | ||
Sbjct 129 GAACAATATCTTTTATGGTTTATAGAAAATTCAGGTTACACCAAGAGAAGAACAACATAT 188
Query 179 -AGCTTGtttttctttttcatcttttacatctttctcatcttgttcatc-tctttcatca 236
| ||||||||||||||||||| || |||| || | || |||||| || ||||||
Sbjct 189 CATCTTGTTTTTCTTTTTCATC--TT---GCTTT-TC-T-TT-TTCATCTTC-TTCATCG 238
Query 237 ACTTCGTCTCCCAGTCGGAAACACCAAGTCTTTCCAAGTTTCCACGGGGCAGATGTACGC 296
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACTTCGTCGCCCGGTCGTAAACACCAAGTCTTTCCAAGTTTCCACGGGGCAGATGTACGC 298
Query 297 AAATCCTTTCTCAGCCACATCATGAAGGAGTTCAAAAGCAAGGCAATCGACATATTCATT 356
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 AAATCCTTTCTCAGCCACATCATGAAGGAGTTCAAAAGCAAGGGAATCGACATATTCATT 358
Query 357 GATAAAGATATCAAGAGGAGTAAGTCCATCGGTCCTGAGCTCATAGAAGCTATCAAAGGA 416
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 359 GATAAAGATATCAAGAGGGGTAAGTCCATCGGTCCTGAGCTCACAGAAGCTATCAGAGGA 418
Query 417 TCGAGGATTGCAATTGTCTTCCTCTCGAGGAACTATGCTTCTTCTTCGTG 466
|||||| |||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 419 TCGAGGGTTGCGATTGTCTTCCTCTCGAGGAAATATGCTTCTTCGTCGTG 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71334974445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5