BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477683
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04230.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 793 0.0
AT5G18380.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 518 3e-146
AT2G09990.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 510 5e-144
> AT3G04230.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:1112990-1113659 REVERSE LENGTH=670
Length=670
Score = 793 bits (429), Expect = 0.0
Identities = 531/579 (92%), Gaps = 11/579 (2%)
Strand=Plus/Plus
Query 1 AAAATCATAAAACCCTAGCAATGGCGACCCAAGCGGCGAAAGAGTCTGTTCAATGCTTCG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 31 AAAATCATAAAACCCTAGCAATGGCGACCCAACCGGCGAAAGAGTCTGTTCAATGTTTCG 90
Query 61 GAAGGAAGAAGACGGCCGTTGCCGTCACCCACTGCAAACGCGGCTCGGGTATGATTAAGC 120
|||||||||||||||| || |||||| |||||||||| |||||||| ||||||||||
Sbjct 91 GAAGGAAGAAGACGGCAACAGCAGTCACCTACTGCAAACGGGGCTCGGGCATGATTAAGC 150
Query 121 TCAACGGTTCGCCGATCGAGCTTCATCAGCCAGAGATCCTCCGATTCAAGATCTTGGAGC 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 151 TCAACGGTTCGCCGATCGAGCTTTATCAGCCAGAGATCCTCCGATTCAAGATCTTCGAGC 210
Query 181 CAATCCTTCTCCTCGGGAAGCACCGTTTCGCCGGAGTTGACATGAGGATCCGAGTCGA-A 239
|| |||||||||||||||| |||||||||||||||||||||||||||||||| | | |
Sbjct 211 CAGTCCTTCTCCTCGGGAAACACCGTTTCGCCGGAGTTGACATGAGGATCCGTG-CCACG 269
Query 240 GGTGGTGGTAACACATCCCAGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCTCTCGTT 299
|| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 270 GGCGGTGGTAACACATCTCGGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCCCTCGTT 329
Query 300 GCTTACTACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATCAAGGACATTTTGGTG 359
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct 330 GCTTACTACCAGAAGTACGTTGATGAGCAGTCGAAGAAGGAGATCAAGGACATCTTGATG 389
Query 360 AGGTACGATAGGACTCTACTTGTTGCGGATCCTAGGAGGTGCGAATCGAAGAAGTTTGGT 419
||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||
Sbjct 390 AGGTACGATAGGACTCTTCTTGTTGCGGATCCGAGAAGGTGCGAGTCGAAGAAGTTTGGT 449
Query 420 GGTAAAGGTGCTCGTTCTCGTTTCCAGAAGAGTTACCGTTAAAAATCTGGTTTGGCtttt 479
||| ||||||||| |||||||||||||||||||||||| | | |||||||| | |||
Sbjct 450 GGTCCTGGTGCTCGTGCTCGTTTCCAGAAGAGTTACCGTT-AGATTCTGGTTT-G-ATTT 506
Query 480 tttG-TT-T-TATCAACGTTTTGGGATTGTGATGTTGAAATTGTGAGACTTTAGG-TTCT 535
|||| || | |||||||||||||||||| |||||||||||||||||||| || || ||||
Sbjct 507 TTTGTTTCTGTATCAACGTTTTGGGATTATGATGTTGAAATTGTGAGAC-TT-GGTTTCT 564
Query 536 CTTTTGCGTTTTATTTTCAATGGTTATTGGATAATGTTT 574
|||||||||||||||||||||||||||||||||||||||
Sbjct 565 CTTTTGCGTTTTATTTTCAATGGTTATTGGATAATGTTT 603
> AT5G18380.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr5:6090049-6090758 REVERSE LENGTH=710
Length=710
Score = 518 bits (280), Expect = 3e-146
Identities = 421/488 (86%), Gaps = 14/488 (3%)
Strand=Plus/Plus
Query 11 AACCCTAGCAATGGCGACCCAAGCGGCGAAAGAGTCTGTTCAATGCTTCGGAAGGAAGAA 70
||||||| | |||||||| ||| | || | || ||||| ||||||||||||||||||||
Sbjct 56 AACCCTAACCATGGCGACTCAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGAA 115
Query 71 GACGGCCGTTGCCGTCACCCACTGCAAACGCGGCTCGGGTATGATTAAGCTCAACGGTTC 130
||| || || |||||||| |||||||| || || || ||| |||| |||||||||||||
Sbjct 116 GACCGCAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTT- 174
Query 131 G-CCGATCGAGCTTCAT-CAGCCAGAGATCCTCCGATTCAAGATCTTGGAGCCAATCCTT 188
| || ||||||||| | ||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 175 GCCCAATCGAGCTT-TTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTT 233
Query 189 CTCCTCGGGAAGCACCGTTTCGCCGGAGTTG-ACATGAGGATCCGAGTCGAA-GGTGGTG 246
|||||||| |||||||||||||| || | || ||||||||||||| ||| || |||||||
Sbjct 234 CTCCTCGGAAAGCACCGTTTCGCTGGTG-TGAACATGAGGATCCGTGTC-AACGGTGGTG 291
Query 247 GTAACACATCCCAGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCTCTCGTTGCTTACT 306
|| ||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct 292 GTCACACATCCCAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTACT 351
Query 307 ACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATCAAGGACATTTTGGTGAGGTACG 366
||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct 352 ACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATTAAGGATATCTTGGTGAGGTATG 411
Query 367 ATAGGACTCTACTTGTTGCGGATCCTAGGAGGTGCGAATCGAAGAAGTTTGGTGGTAAAG 426
|||||||||| ||||| |||||||| |||||||| || ||||||||||||||||| |
Sbjct 412 ATAGGACTCTGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGTG 471
Query 427 GTGCTCGTTCTCGTTTCCAGAAGAGTTACCGTTAAA-AAT-CTGGTTTGGCtttttttGT 484
||||||||||||||| |||||||||||||||||||| || |||||||| | |||| ||
Sbjct 472 GTGCTCGTTCTCGTTACCAGAAGAGTTACCGTTAAACAAAGCTGGTTTG--TGTTTT-GT 528
Query 485 TTTATCAA 492
||| ||||
Sbjct 529 TTT-TCAA 535
> AT2G09990.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr2:3781328-3782049 FORWARD LENGTH=722
Length=722
Score = 510 bits (276), Expect = 5e-144
Identities = 398/457 (87%), Gaps = 8/457 (2%)
Strand=Plus/Plus
Query 10 AAACCCTAGCAATGGCGACCCAAGCGGCGAAAGAGTCTGTTCAATGCTTCGGAAGGAAGA 69
|||||||| | |||||||| ||| | || | || ||||| |||||||||||||||||||
Sbjct 104 AAACCCTAACCATGGCGACACAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGA 163
Query 70 AGACGGCCGTTGCCGTCACCCACTGCAAACGCGGCTCGGGTATGATTAAGCTCAACGGTT 129
|||| || || |||||||| |||||||| || || || ||| | ||||||||||||||||
Sbjct 164 AGACCGCAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTAATTAAGCTCAACGGTT 223
Query 130 CG-CCGATCGAGCTTCAT-CAGCCAGAGATCCTCCGATTCAAGATCTTGGAGCCAATCCT 187
| || ||||||||| | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 224 -GCCCAATCGAGCTT-TTCCAGCCAGAGATCCTCCGATTCAAGATCTTCGAGCCGATTCT 281
Query 188 TCTCCTCGGGAAGCACCGTTTCGCCGGAGTTG-ACATGAGGATCCGAGTCGAA-GGTGGT 245
||||||||| |||||||||||||| || | || ||||||||||||| ||| || ||||||
Sbjct 282 TCTCCTCGGAAAGCACCGTTTCGCAGGTG-TGAACATGAGGATCCGTGTC-AACGGTGGT 339
Query 246 GGTAACACATCCCAGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCTCTCGTTGCTTAC 305
||| ||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct 340 GGTCACACATCACAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTAC 399
Query 306 TACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATCAAGGACATTTTGGTGAGGTAC 365
|||||||||||||||||||||||||||||||||||||| || || || |||||||||||
Sbjct 400 TACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATTAAAGATATCTTGGTGAGGTAT 459
Query 366 GATAGGACTCTACTTGTTGCGGATCCTAGGAGGTGCGAATCGAAGAAGTTTGGTGGTAAA 425
||||||||||| ||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 460 GATAGGACTCTGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGT 519
Query 426 GGTGCTCGTTCTCGTTTCCAGAAGAGTTACCGTTAAA 462
|||||||||||||||| ||||||||||||||||||||
Sbjct 520 GGTGCTCGTTCTCGTTACCAGAAGAGTTACCGTTAAA 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5