BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477689
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04280.1 | Symbols: ARR22, RR22 | response regulator 22 | ch... 651 0.0
> AT3G04280.1 | Symbols: ARR22, RR22 | response regulator 22 |
chr3:1129944-1131084 REVERSE LENGTH=835
Length=835
Score = 651 bits (352), Expect = 0.0
Identities = 513/586 (88%), Gaps = 29/586 (5%)
Strand=Plus/Plus
Query 76 ATTCTTGAGAGAAAAGAAATCGAAGATGG---C--AA--CA--GAAGGTACTGAGAAAAC 126
||||||||||||||||||||||||||||| | || || | |||||| ||||||||
Sbjct 188 ATTCTTGAGAGAAAAGAAATCGAAGATGGCAACAAAATCCACCGGAGGTACCGAGAAAAC 247
Query 127 TAAGTCAACAGAAGTGAAGAAGAAACT-A--AACGTGTTGATCGTCGATGATGATCCATT 183
||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 248 CAAGTCGATAGAAGTGAAGAAGAAACTAATCAACGTGTTGATCGTCGATGATGATCCATT 307
Query 184 AAACTGTAGACTCCACGAGATGATCATCAAAACGATCGGAGGAATTTCTCAGACGGCAAA 243
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 308 AAACCGTAGACTCCACGAGATGATCATCAAAACGATCGGAGGAATTTCTCAGACTGCAAA 367
Query 244 GAATGGTGAGGAGGCTGTGATTCTCCACC--G-CGGTGGGGCATCTTTCGACCTTATTCT 300
|||||| |||||||| ||||| ||||||| | ||| | ||||||||||||||||||||
Sbjct 368 GAATGGCGAGGAGGCAGTGATCCTCCACCGTGACGGCGAAGCATCTTTCGACCTTATTCT 427
Query 301 AATGGATAAGGAAATGCCCGAGAGGGATGGAGTTTCGACAACTAAGAAGCTAAGAGAAAT 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AATGGATAAGGAAATGCCTGAGAGGGATGGAGTTTCGACAACTAAGAAGCTAAGAGAAAT 487
Query 361 GAAAGTGACGTCAATGATTGTTGGGGTAACGTCACTAGCTGACCAAGAAGAAGAGCGTAA 420
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 488 GAAAGTGACGTCAATGATCGTTGGGGTAACGTCAGTAGCTGACCAAGAAGAAGAGCGTAA 547
Query 421 GGCTTTTATGGAAGCCGGACTTAACCATTGCTTGGAAAAACCCTTAACCAAGGCCAAGAT 480
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 548 GGCTTTTATGGAAGCTGGGCTCAACCATTGCTTGGAAAAACCCTTAACCAAGGCCAAGAT 607
Query 481 CCTCCCTCTCATTAACCATCTCCTGGGTGCTTGATGGATGACGGCTCATTAAT-T-TCCT 538
| |||| ||||||| ||| ||| | | |||||||||||||| ||||||||||| | || |
Sbjct 608 CTTCCCGCTCATTAGCCACCTCTTCGATGCTTGATGGATGAAGGCTCATTAATGTATC-T 666
Query 539 AAAAAATACAA-CAATGTC-TACACGTACACGTGTACTTGACATATATATCTGCATGCGT 596
| | | ||| || || | ||| |||||||||| |||||| | | |||||||| |
Sbjct 667 ATATTTT-CAATCA-TGAAAT-CACCTACACGTGTATTTGACACAAAAATCTGCAT---T 720
Query 597 TTCTTTTGGAATTTAGGGTTTCTTATATCTATGTCTGATTTCTTTT 642
| || || | | |||||||||| |||||||||| |||||| ||||
Sbjct 721 TG-TTGTG-A-TATAGGGTTTCTCATATCTATGTTTGATTTATTTT 763
Score = 71.3 bits (38), Expect = 1e-11
Identities = 57/65 (88%), Gaps = 5/65 (8%)
Strand=Plus/Plus
Query 11 ATATTTGTTTGTTAAACAACTCATGAGTTAGAATGTAATGTAGATTACATTTCAGCCAAA 70
||||| |||||||| ||||||| | |||||| |||||||||||||||||||||||||
Sbjct 1 ATATTAGTTTGTTATACAACTC---ACTTAGAA--TAATGTAGATTACATTTCAGCCAAA 55
Query 71 TTCAT 75
|||||
Sbjct 56 TTCAT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5