BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477690
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04290.1 | Symbols: ATLTL1, LTL1 | Li-tolerant lipase 1 | ch... 2346 0.0
> AT3G04290.1 | Symbols: ATLTL1, LTL1 | Li-tolerant lipase 1 |
chr3:1133320-1136316 REVERSE LENGTH=1494
Length=1494
Score = 2346 bits (1270), Expect = 0.0
Identities = 1408/1474 (96%), Gaps = 12/1474 (1%)
Strand=Plus/Plus
Query 1 CACACTCTCCATATGCTCACAAATCATACGTCAATTGA-AAACATTTCTAGCTTCTCATT 59
|||||||||||||||||| || |||||||||||||| | |||| || | |||||||||
Sbjct 7 CACACTCTCCATATGCTCTCATATCATACGTCAATTTATAAAC-GTT-T--CTTCTCATT 62
Query 60 CGTCATCTAGTCCCATTCTCTGCCCCTAACTATGGATATCAATTGTTCTCCATTAGGGTT 119
|||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||
Sbjct 63 CGTCATCTAGTCCCATTCTCTGTCCATAACAATGAATATCAATTGTTCTCCATTAGGGTT 122
Query 120 TCTAATTTCACTCTTCTTCATTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCTAATTTCACTCTTCTTCATTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTT 182
Query 180 CTTTGTCTTCGGTGACTCTCTCGTCGACAATGGAAACAACGATTACCTCGTCACCACTGC 239
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 CTTTGTCTTTGGTGACTCTCTCGTCGACAATGGAAACAACGACTACCTCGTCACCACTGC 242
Query 240 CCGCGCCGACAATTACCCGTATGGTATCGACTACCCGACCCGTAGACCCACCGGACGTTT 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CCGTGCCGACAATTACCCGTATGGTATCGACTACCCGACCCGTAGACCCACCGGACGTTT 302
Query 300 CTCTAACGGCCTTAACATTCCCGACATTATCAGTGAGGCTATAGGCATGCCGTCGACTTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTCTAACGGCCTTAACATTCCCGACATTATCAGTGAGGCTATAGGCATGCCGTCGACTTT 362
Query 360 GCCGTACCTTAGCCCGCATCTCACCGGAGAAAATCTTCTAGTCGGTGCTAATTTTGCCTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GCCGTACCTTAGCCCGCATCTCACCGGAGAAAATCTTCTAGTCGGTGCTAATTTTGCCTC 422
Query 420 CGCCGGAATTGGAATCCTCAACGATACTGGAATTCAATTCGTAAACATAATTAGAATTTC 479
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 423 CGCAGGAATTGGAATCCTCAACGACACTGGAATTCAATTCGTAAACATAATTAGAATTTC 482
Query 480 TAAACAGATGGAATACTTCGAACAGTACCAGCAACGAGTGAGTGCATTGATCGGACCAGA 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 TAAACAGATGGAATACTTCGAACAGTACCAGCTACGAGTGAGTGCATTGATCGGACCAGA 542
Query 540 AGCTACACAACAGCTAGTTAACCAAGCTCTTGTCCTAATCACACTCGGTGGTAATGATTT 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 AGCTACACAACAGCTAGTTAACCAAGCTCTTGTCCTAATTACACTCGGTGGTAATGATTT 602
Query 600 CGTCAACAATTATTATCTAGTTCCGTTTTCAGCTCGTTCTCGCCAATTCGCGTTACCAGA 659
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 603 CGTCAACAATTATTATCTAATTCCGTTTTCAGCTCGTTCTCGCCAATACGCGTTACCAGA 662
Query 660 CTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAAAACTCTACGAACTGGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAAAACTCTACGAACTGGG 722
Query 720 AGCAAGAAGAGTTTTAGTAACTGGAACGGGTGCGATGGGATGTGCTCCCGCGGAGCTGGC 779
|||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 723 TGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAATGGGATGTGCTCCCGCGGAGCTGGC 782
Query 780 TCAGCATAGCCGCAATGGCGAGTGCTATGGCGCCCTCCAAACAGCAGCCGCTTTGTTCAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCAGCATAGCCGCAATGGCGAGTGCTATGGCGCCCTCCAAACAGCAGCCGCTTTGTTCAA 842
Query 840 TCCACGATTAGTTGATTTGATCGCATCAGTCAATGCTGAGATTGGTCAAGACGTTTTTGT 899
||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 843 TCCGCAATTAGTTGATTTGATCGCATCAGTCAATGCTGAAATTGGTCAAGACGTGTTTGT 902
Query 900 AGCAGCCAATGCCTATCAAATGAACATGGATTATCTAACTAATCCTGAACAATTTGGGTT 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 903 AGCAGCCAATGCCTATCAAATGAACATGGATTATCTATCTAATCCTGAACAATTTGGGTT 962
Query 960 TGTGACATCGAAGGTGGCATGTTGTGGACAAGGACCGTACAATGGCATAGGACTATGCAC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGTGACATCGAAGGTGGCATGTTGTGGACAAGGACCGTACAATGGCATAGGACTATGCAC 1022
Query 1020 ACCAATCTCGAATTTGTGTCCGAATAGAGACTTATATGCGTTTTGGGATGCGTTTCATCC 1079
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACCAGTCTCGAATTTGTGTCCGAATAGAGACTTATATGCGTTTTGGGATGCGTTTCATCC 1082
Query 1080 GACAGAGAAAGCCAATAGGATCATCGTTAATCAGATCCTGACTGGTTCCTCCAAGTATAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GACAGAGAAAGCCAATAGGATCATCGTTAATCAGATCCTGACTGGTTCCTCCAAGTATAT 1142
Query 1140 GCACCCTATGAATCTTAGCACCGCCATGCTCTTGGATTCTTCTAGAATCTAATTTAAGTG 1199
||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||
Sbjct 1143 GCACCCTATGAATCTTAGCACGGCCATGCTATTGGATTCTTCTAAAATCTAGTTTAAGTG 1202
Query 1200 ATTTATGTCAACTAAATGTCAAGGTCATTCCA-CTGGTACTTTGCATTGTTATTACTGTG 1258
|||| |||||||||||||||| ||||||||| ||| |||||||||||||| ||| ||||
Sbjct 1203 ATTTCTGTCAACTAAATGTCA-GGTCATTCCTTCTG-TACTTTGCATTGTTGTTAATGTG 1260
Query 1259 GTT-ATTAATAAGTTTGATGGCTACAACTAGTTAAAGCATGCAAGAGAGTTTTTATTGTC 1317
|| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1261 -TTGATTAATAAGTTCAATGGCTACAATTAGTTTAAGCATGCAAGAGAGTTTTTATTGTC 1319
Query 1318 GGTCGTGTAGTTTGATGCCTTTGCTTGTTGTAGCTTGttttttttttttttttttAAAAG 1377
|||||| |||||||||| |||||||||||||| |||||| |||||||| |||| ||||||
Sbjct 1320 GGTCGTCTAGTTTGATGTCTTTGCTTGTTGTATCTTGTTATTTTTTTTATTTTATAAAAG 1379
Query 1378 ATCTGTTGTATCTTGGTTAGCTTAGTTTAGTCCTTTTTGGTGTGTGTGCCAATTAT--CA 1435
| | |||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||
Sbjct 1380 AACCGTTGTATCTTGGTTAGCTTAGTTTAGTCTTTTTTGGTTTGTATGCCAATTATATCA 1439
Query 1436 TGTAATATTTGGAGACTTGGAGTGATTGATATAT 1469
||||||||||| | ||||| ||||||||||||||
Sbjct 1440 TGTAATATTTGAAAACTTGTAGTGATTGATATAT 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5