BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477691
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04300.1 | Symbols: | RmlC-like cupins superfamily protein ... 933 0.0
> AT3G04300.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1140193-1141030 FORWARD LENGTH=723
Length=723
Score = 933 bits (505), Expect = 0.0
Identities = 579/615 (94%), Gaps = 4/615 (1%)
Strand=Plus/Plus
Query 1 GTCCTTCACCATATAAATACATCTCAAATACCTACTTTCTTCTTATCTTTCTTGCTCACT 60
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1 GTCCTTCACCATATAAATACATCTCATATACCTACTTTCTTCTTATCTTTGTT-CTCACT 59
Query 61 GTTTCTTTCTGTTCTATCTAATAGCATTGAAACATCGTCAAATTCTCCCCTTATTCCTCT 120
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 60 GTTTCTTTCTGTTCTATCTAATAACATTGAAACATCGTCGAATTCTCACCTTATTCCTCT 119
Query 121 TCCAAAATGAATATTGTAATCGAAAACAACCCTTCAAGCAGAAGGTTATCCGACGTTGGA 180
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 120 TCCAAAATGAATATTGTAATCGAAAACAACCCTTCGAGCAGAAGGTTATCTGACCTTGGA 179
Query 181 GTCATGTCATGGCCTAAATGGTCTTGTCAGCCGGGGAAATATGCATTGGTATTTGAAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTCATGTCATGGCCTAAATGGTCTTGTCAGCCGGGGAAATATGCATTGGTATTTGAAGAA 239
Query 241 AGAGAAACATGCTATTTAGTGAAGGGAAAGGTGAAGGTGTATCTAAAAGGGTCATCTGAG 300
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 AGAGAGACATGCTATTTGGTGAAGGGAAAGGTGAAGGTGTATCCAAAAGGGTCATCTGAG 299
Query 301 TTTGTAGAGTTTGGTGCAGGAGACCTTGTGACCATCCCCAAGGGACTTAGCTGCACTTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTGTAGAGTTTGGTGCAGGAGACCTTGTGACCATCCCCAAGGGACTTAGCTGCACTTGG 359
Query 361 GATGTATCACTTTTCATCGACAAACACTACAAGTTCGATCCTCCTACTTCTCCATAATAT 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 GATGTATCACTTTTCATAGACAAACACTACAAGTTCGATCCTCCTACTTCTCCATAATTT 419
Query 421 TTCCTAATTACAATCTACTTCTCGGTTAGTCTTTATCATCATGAAGCATAGAAGACTCTA 480
||||||| ||||||||| || | ||||||||||||||| || |||||||| |||||||||
Sbjct 420 TTCCTAACTACAATCTAGTTTTGGGTTAGTCTTTATCACCACGAAGCATAAAAGACTCTA 479
Query 481 TTTTCAGACACTAAGTTATAAAAGAGAAACCAAAAAGATAATGCTTTAGAATACGTACAA 540
| |||||||| ||| |||| ||||||||||||||||||||||||| || |||||| ||
Sbjct 480 TATTCAGACAATAAAATATAGAAGAGAAACCAAAAAGATAATGCTT-AGGATACGTGTAA 538
Query 541 AGCCCTTCCTAGATTATGTTTTCAGATGTAACTTCTTTGTTTGTCATAGAA-AAAGCAAT 599
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 539 AGCCCTTCCTAGATTATGTTTTCAGATGTAACTTCTTTGTTTCTCATAGAACAAA-CAAT 597
Query 600 TTGCATATGCCAATA 614
||| |||||||||
Sbjct 598 CGGCACATGCCAATA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29587912583
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5