BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477695
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04360.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 2026 0.0
AT1G12380.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 54.7 2e-06
> AT3G04360.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:1157004-1158310 REVERSE LENGTH=1307
Length=1307
Score = 2026 bits (1097), Expect = 0.0
Identities = 1233/1297 (95%), Gaps = 16/1297 (1%)
Strand=Plus/Plus
Query 1 AACTGATCGTATAATCATTCTCACGAAGACGAGTGACCAAAAGAAGGTCTCCCGCTTCTT 60
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 AACTGATCGTATAATCATTCTCACGGAGACGAGTGACCAAAACAAGGTCTCCCGCTTCTT 60
Query 61 GCGAAGATTAGACGAATCCATTTAGATTTTAGAAACCACAC----AAAA-ATGGGTCGGC 115
|||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 61 GCGAAGATTAAACGAATCCATTTAGATTTTAAAAACCACACAAAAAAAATATGGGTCGGC 120
Query 116 TCAAGTTCGCATGTCCCGTTCTTGAGATCAATCTAATCTCAGCTCAAGATTTAGCCCCTG 175
|||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 121 TCAAGTTCGCATGTCCGGTTCTTGAGATCAATTTAATCTCAGCTCAAGACTTAGCCCCTG 180
Query 176 TTTCAAGAAACATGAAAACGTATTCCGTCGCTTGGATCAACACCGATCCTATGAGAAAAC 235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCAAGAAACATGAAAACGTATTCCGTCGCTTGGATCAACACCGATCCTATGAGAAAAC 240
Query 236 TCACTACGCGTGTTGATCAATCCAATAGAGCTAACCCTATATGGAACGAGAAGTTTGTGT 295
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TCACCACGCGTGTTGATCAATCCAACAGAGCTAACCCTATATGGAACGAGAAGTTTGTGT 300
Query 296 TTCGTGTTAACGACAAGATTCT-TGACGTTGACGCATCAGCGATTGTGATTGAGATTTAC 354
||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 301 TTCGTGTCAACGACAAGATTCTCT-ACGTTGACGCATCAGCGATTGTGATTGAGATCTAC 359
Query 355 GCAGCGGCTTGGGCTAAAGATGCTCTTGTTGGTACTGTGAATGTTCTTCTTAGCGATCTT 414
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 GCAGCGGCTTGGGCTAAAGATGCTCTTGTTGGTACTGTGAATGTTCTTCTCAGCGATCTT 419
Query 415 TTTGCTCCTTGGTCTGGTTTTGGTGATGGTGACGATGGTGGTGGTGGGAATAATAATATG 474
|||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||
Sbjct 420 TTTGCTCCTTGGTCTGGTTTTGGTGATGGTAACGACGGTGGTGGTGGGAATAACAACATG 479
Query 475 AGGCTTGTGACGCTTCAGATTCGTCGTCCTTCAGGGAGGCTTCAAGGGTTTTTACGGCTA 534
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 480 AGGCTTGTGACTCTTCAGATTCGTCGTCCTTCAGGGAGGCTACAAGGGTTTTTACGTCTC 539
Query 535 GGTGTTGCTCTTCTCGACGGTGGTCAACGGAGTATGCCGTTATCTATTGAGGTTTTTGAT 594
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 540 GGTGTTGCACTTCTTGACGGTGGTCAACGGAGTATGCCTTTATCTATTGAGGTTTTCGAT 599
Query 595 GGAAGTCGAAGAGGAGAGACGAATAGTAATAAAAGAGATCAAGAAGCTTCAAGGATGATG 654
|||||||||| |||||||| ||||||| ||||||||| ||||| |||||||| ||||||
Sbjct 600 GGAAGTCGAAAAGGAGAGAGGAATAGTGTTAAAAGAGACCAAGAGGCTTCAAGAATGATG 659
Query 655 CATCGCCGTACGAATAGCGATCAAACGGATTTAACCACGTCTACGAATGATTATGGTGTG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 CATCGCCGTACGAATAGCGATCAAACGGATTTAACCACGTCTACGAATGATTACGGTGTG 719
Query 715 AAAACAGGGGTTGTTACTGGCAATGGAGGAGGAGGAGGTGGTGGTGGTGGTATTGTTGTT 774
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 720 AAAACAGGGGTTGTTACTGGCAATGGAGGAGGAGGTGGTGGTGGTGGCGGTATTGTTGTT 779
Query 775 GGTGCGGATAGTATGGTTAATGGTTCACTTTGTAGCTCTGATATTGGACCATCAGCGTCT 834
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 GGTGCGGATAGTATGGTTAATGGTTCGCTTTGTAGCTCTGATATTGGACCATCAGCGTCT 839
Query 835 GTGGTTGCGGCTGCAATTGCTCAGGGGCTTTACAATAGGCAGAAAACAGCGGTTAAAGCG 894
|||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 840 GTGGTTGCGGCTGCGATTGCGCAAGGGCTTTACAATAGACAGAAAACAGCGGTTAAAGCG 899
Query 895 GCGAGTAGTAACAAAGAGGACGCAAGTTCGATACTTGAAGGGAAAACAGAGGGAATTGAG 954
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GC------TAACAAAGAGGACGCAAGTTCGATACTTGAAGGGAAAACAGAGGGAATTGAG 953
Query 955 CATAGAGTTGAACGGTGGAGAGCAGAGAAAAATGGCACGGCTGGAGCGGGTGAAGCGGCT 1014
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 954 CATAGAGTTGAACGGTGGAGAGCAGAGAAAAATGGCACGGGTGGAGCGGGTGGAGCGGCT 1013
Query 1015 GGATCGAGCGATGATTCTAGCGggaaaggaggagctggaaggagaagaaggagaagaaga 1074
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 1014 GGATCAAGCGATGATTCTAGCGGGAAAGGAGGAGCGGGAAGGAGAAGAAGGAG--G-AGG 1070
Query 1075 agaagaaaggagaaacaacaagggcggagaaacggtggaggagaaggtaagaaaggGTTG 1134
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1071 AGAAGAAAGGAGAAACAACAAGGGAGGAGAAACGGTGGAGGAGAGGGTAAGAAAGGGTTG 1130
Query 1135 TTTTCATGTTTTGGAAACGTGTTTGGATGTGAGATTTCGATAACATGTGGCGGTGGAAGC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTTTCATGTTTTGGAAACGTGTTTGGATGTGAGATTTCGATAACATGTGGCGGTGGAAGC 1190
Query 1195 GGCGGAGAAGGAGACAGCACAAAGAAGAGATATAATAACAATAAAGTAGTAAATCTTAGT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GGCGGAGAAGGAGACAGCACAAAGAAGAGATATAATAACAATAAAGTAGTAAATCTTAGT 1250
Query 1255 GCTGTAGACGAAACGTTTAGTCATTCTGCTACTTGAG 1291
||||||||||||||||||||||||||||| |||||||
Sbjct 1251 GCTGTAGACGAAACGTTTAGTCATTCTGCGACTTGAG 1287
> AT1G12380.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62870.1);
Has 173 Blast hits to 170 proteins in 34 species: Archae -
0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses
- 7; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:4214262-4217132
REVERSE LENGTH=2871
Length=2871
Score = 54.7 bits (29), Expect = 2e-06
Identities = 34/36 (94%), Gaps = 1/36 (3%)
Strand=Plus/Minus
Query 738 TGGAGGAGGAGGAGGTGGTGGTGGTGGTAT-TGTTG 772
|||||||||||||||||||||||||||| | |||||
Sbjct 318 TGGAGGAGGAGGAGGTGGTGGTGGTGGTGTCTGTTG 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5