BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477696
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04370.1 | Symbols: PDLP4 | plasmodesmata-located protein 4 ... 1507 0.0
> AT3G04370.1 | Symbols: PDLP4 | plasmodesmata-located protein
4 | chr3:1159423-1161126 FORWARD LENGTH=1134
Length=1134
Score = 1507 bits (816), Expect = 0.0
Identities = 974/1049 (93%), Gaps = 16/1049 (2%)
Strand=Plus/Plus
Query 1 CTCAAACATGGTTGTCCACTTGATCTCTCTCCTCACACAAACCCTAGCCCTAATCATTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCAAACATGGTTGTCCACTTGATCTCTCTCCTCACACAAACCCTAGCCCTAATCATTCT 60
Query 61 CTCTCTGCCCTCTATCATCAACACTTCCCAA-TTGGATTACGATACTCTAGTTTTCAAAC 119
||||| |||||||||||||||||||| ||| || |||||||| ||||| ||||||||||
Sbjct 61 GTCTCTTCCCTCTATCATCAACACTTCTCAACTT-GATTACGACACTCTTGTTTTCAAAC 119
Query 120 AATGCGATTCATTGGCCCCAAACATCTTCC---AA--AA-AACAAGA---CCAAATTACT 170
|||||||| |||||| | |||||||| ||| || || ||||| | ||||||||||
Sbjct 120 AATGCGATCCATTGGACGCAAACATCCTCCAAAAAGCAACAACAAAATCTCCAAATTACT 179
Query 171 CGAATAATATTCTCTTTCTTCGTGCACAAGCCCTTTCTTCTCTCTTACGCAAACTCGAAT 230
||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CGAATCAGAATCTCTTTCTTCGTGCACAAGCCCTTTCTTCTTTCTTACGCAAACTCGAAT 239
Query 231 CCGAATCCTCTTGGTCTAAGTTCTTTAAGACTCTAGTTGGTAACGAAGAACACGCCGTCT 290
| ||||||||| | ||||| ||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 240 CAGAATCCTCTCGATCTAAATTCTTGAAGACTCTAGTTGGTAACGAAAAACACGCTGTCT 299
Query 291 CAGGATGGTTCCAATGCAGAGAAGATTATCCGAATGGGATATGCCATAAATGTGTTGGTG 350
| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 300 CTGGATGGTTCCAATGCAGAGAAGATTATCCGAGTGAGATCTGCCATAAATGTGTTGGTG 359
Query 351 CTCTTCGTGAGATTTCGTCTAGAAT-GTGTGGAAATGCCACGTCAGCTCGTATTCATCTT 409
||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 360 ATCTTCGTGAAATTTCGTCTAG-ATCGTGTGGAAATGCCACGTCAGCTCGTATTCATCTT 418
Query 410 CGAGGATGTCACTTGATATACAAATTCGAACGTATTGACACCCCTGGCGCTC---TTAAT 466
||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 419 CGAGGATGTCATTTGATATACAAATTCGAACGTATTGATACCCCTGGCGCTCAAGTTAAT 478
Query 467 AATCATCACAACTACAAGTTATTTGAGAGCCCGGAACACGGTCTCATCCACAAGATATGC 526
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 AATCATCACAAGTACAAGTTATTTGAGACCCCGGAACACGGTCTCATCCACAAGATATGC 538
Query 527 GAGGGAGCTACCGCAGAGACTTTAGCCGGATTCGAAGAGATGAGGGCGGAGGCACTCATT 586
|| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 539 GATGGAGCTACCGCGGAGACTTTCCCCGGATTCGAAGAGATGAGGACGGAGGCACTCACT 598
Query 587 GCAGCCGAAACAGGAGTCGTTGACGGGCACGGATTCTATGAGGATAGCTACAAGCTCCTC 646
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 GCAGCCGAAACAGGAGTTGTTGACGGTCACGGATTCTATGAGGATAGCTACAAGCTCCTC 658
Query 647 CACGTTGTGGCTCAATGCGACGGCCACGTTGAAGCTTGCGATTGCGGAGAGTGCATAAGT 706
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 CACGTTGTGGCTCAATGCGACGGCCACGTTGAAGCTTGCGATTGCGGCGAGTGCATAAGT 718
Query 707 TCCGCGGCGGCAGCTGCAGCAGAAGAGTGCCGGTGGTCTGTAGCCGGTCAAATATACTTA 766
|| || |||||||| |||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 719 TCAGCCGCGGCAGCAGCAGCAGAAGAGTGTCGGTGGTCCATAGCCGGACAAATATACTTA 778
Query 767 GAAGGGTGCCACGTCAGTTATACATATCACCCGCATGAACTTCCCGATGATTCATACCAC 826
||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 779 GAAGGGTGCCACGTCGGTTATACATATCACCCACATGAACTTCCCAATGATTCATACCAC 838
Query 827 GAAGAAGGTTCAAAAGTTAACACGGGGAAGTCGTTGGCGATAGTTGTAGGAGGAGTAGCG 886
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 GAAGAAGGTTCAAAAGTAAACACGGGGAAGTCGTTGGCGATTGTTGTAGGAGGAGTAGCG 898
Query 887 GCATTGGTCTTTGTTGCTATCTTTTTTATGTTCCTAAAAAGCTTGCGTAAAAAAGGAGAT 946
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 GCATTGGTCTTTGTTGCTATCTTTTTTATGTTCCTAAAAAGCTTGCGGAAAAAAGGAGAT 958
Query 947 GATTGTTGAAGAGTACATGATCAGAGAGATGTTGGGAAAATACTTTTGTTCCTTGTAATC 1006
||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 959 GATTGTTGAAGGGTACATGATCAGAGAGATGTTGGGAAAATAATTCTGTTCCTTGTATTT 1018
Query 1007 GTTCTACCAACCAAGGAAAATCTCCTTCT 1035
|||||||||||||||||||| ||||||||
Sbjct 1019 GTTCTACCAACCAAGGAAAACCTCCTTCT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5