BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477698
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04380.1 | Symbols: SUVR4, SDG31 | SET-domain containing pro... 2660 0.0
> AT3G04380.1 | Symbols: SUVR4, SDG31 | SET-domain containing protein
lysine methyltransferase family protein | chr3:1161387-1164929
FORWARD LENGTH=2084
Length=2084
Score = 2660 bits (1440), Expect = 0.0
Identities = 1718/1846 (93%), Gaps = 44/1846 (2%)
Strand=Plus/Plus
Query 40 AAGCTCGAGCTCTTTGCATGCAAATCATTCGCCGTCTTCTTCCACAATTGTGTTTTTTAG 99
||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAGTTCGAACTCTTTGCATGC-AATCATTCGCCGTCTTCTTCCACAATTGTGTTTTTTAG 175
Query 100 -C--CGGCGGCTGGATTCGAGAAGCTTCCGATTGCTCTGTATAG-TC--TCTCTCTGTGT 153
| |||||||||||||||||||||||||||||| ||||||| | || |||||| | |
Sbjct 176 CCGGCGGCGGCTGGATTCGAGAAGCTTCCGATTGTTCTGTAT-GATCAGTCTCTCCG-G- 232
Query 154 A-TTTGCAGGTTCTGTTGAAAGTGATCTTGATATGCAACAAGCGATGCTCCCCAATAAAG 212
| | || ||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 233 ACTAACCA-GTTCTGTTGAAAGTGATCTCGATATGCAACAAGCGATGCTCACCAATAAAG 291
Query 213 ACGAGAAGGTACGCGAAGCTTTAGAGAAAACAAGGGAATTGGGTATTGCCGATGAAAAGA 272
|||||||||||| | |||||||||||| ||||||| |||||| |||| ||||||||||||
Sbjct 292 ACGAGAAGGTACTCAAAGCTTTAGAGAGAACAAGGCAATTGGATATTCCCGATGAAAAGA 351
Query 273 CAATGCCAGTGCTTACGAAGCTCCTAGAAGAGGCTGATGGCAATTGGTCATTA-ATAAAA 331
||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||
Sbjct 352 CAATGCCAGTGCTTATGAAGCTCCTAGAAGAGGCTGGTGGCAATTGGTC-GTATATAAAG 410
Query 332 TTGGATAACTATACTGCACTTGTCGACGCTATTCT-TTCTGTTGAGGAAGAGAAGAAGCA 390
|||||||||||||||||||| |||||||||||| | |||||||||||| ||||| |||||
Sbjct 411 TTGGATAACTATACTGCACTGGTCGACGCTATT-TATTCTGTTGAGGATGAGAATAAGCA 469
Query 391 AAGTGAAGGTTCATCTAATGGCAATAGAGGGAAGAATCTTAAGGTCATTGGCTCTCCTGC 450
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 470 AAGTGAAGGTTCATCTAATGGTAATAGAGGGAAGAATCTTAAGGTCATTGACTCTCCTGC 529
Query 451 TACTCTGaaaaaaaCTTACGAAACCCGTTCTGCATCCTCAGGTTCGTCCATTCAGGTAGT 510
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 530 TACTCTGAAAAAAACTTACGAAACCCGTTCTGCATCCTCAGGTTCCTCCATTCAGGTAGT 589
Query 511 CCAGAAGCAGCCACAGATTAGCAATGGTGATCGCAAGAGGAAATATAAAAGCAAAATTTC 570
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 590 CCAGAAGCAGCCACAGCTTAGTAATGGTGATCGCAAGAGGAAATATAAAAGCAGAATTGC 649
Query 571 TGACATAACTAAAGGTTCAGAGAGCGTTAAAATATCTCTTGTAGATGATGTTGGGAGTGA 630
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 650 TGACATAACTAAAGGTTCAGAGAGCGTTAAAATCCCTCTTGTCGATGATGTTGGGAGTGA 709
Query 631 AGCTGTGCCGAAGTTTACTTACATCCCTCACAACATTGTATACCAAAGTGCTTATCTCCA 690
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 710 AGCTGTGCCAAAGTTTACTTACATCCCTCACAACATTGTTTACCAAAGTGCTTATCTCCA 769
Query 691 CGTGTCTCTGGCTCGAATTTCTGATGAAGATTGCTGCGCGAACTGCAAAGGGAACTGTCT 750
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 770 CGTGTCTCTGGCTCGAATCTCTGATGAAGATTGCTGCGCAAACTGCAAAGGGAACTGTCT 829
Query 751 TTCAGCTGACGTTCCTTGCACTTGTGCTCGTGAAACCAGTGGAGAATATGCTTATACCAA 810
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TTCAGCTGACTTTCCTTGCACTTGTGCTCGTGAAACCAGTGGAGAATATGCTTATACCAA 889
Query 811 AGAAGGGTTGCTAAAGGAAAAGTTTCTGGACACCTGTCTTAAGATGAAAAAGGAACCAGA 870
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGAAGGGCTGCTAAAGGAAAAGTTTCTGGACACCTGTCTTAAGATGAAAAAGGAACCAGA 949
Query 871 TACGTTCCCTAAAGTTTACTGCAAAGACTGCCCTTTGGAGAAACATCACGATAAGGGCAC 930
| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 950 TTCGTTCCCTAAAGTTTACTGCAAAGACTGCCCTTTGGAGAGAGATCACGATAAGGGCAC 1009
Query 931 ATATGGAAAATGTGATGGACACTTAATCCGGAAGTTCATCAAGGAATGCTGGAGAAAGTG 990
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 ATATGGAAAATGTGATGGACACTTAATCCGAAAGTTCATCAAGGAATGCTGGAGAAAGTG 1069
Query 991 TGGATGTGATATGCAGTGTGGAAATCGAGTAGTACAGAGAGGGATAAGGTGCGAACTGCA 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1070 TGGATGTGATATGCAGTGTGGAAATCGAGTAGTACAGAGAGGGATAAGGTGCCAACTGCA 1129
Query 1051 GGTTTACTTTACTCAAGAAGGGAAAGGATGGGGTCTTAGAACACTGCAAGACTTGCCAAA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1130 GGTTTACTTTACTCAAGAAGGGAAAGGATGGGGTCTTAGAACACTGCAAGACTTGCCCAA 1189
Query 1111 AGGAACCTTTATCTGTGAATACATTGGTGAAGTATTGACCAACACGGAGTTATACGACCG 1170
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1190 AGGAACCTTTATCTGTGAATACATTGGTGAAATATTGACCAACACGGAGTTATACGATCG 1249
Query 1171 GAATGTAAGGTCTAGTAGTGAACGGCATACATATCCTGTAACTCTGGATGCAGACTGGGG 1230
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1250 GAATGTTAGGTCTAGTAGTGAACGACATACATATCCTGTAACTCTGGATGCAGACTGGGG 1309
Query 1231 TTCTGAAAAGGATCTAAAAGATGAAGAAGCTCTCTGCCTGGATGCCACAATCTGTGGAAA 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TTCTGAAAAGGATCTAAAAGATGAAGAAGCTCTCTGCCTGGATGCCACAATCTGTGGAAA 1369
Query 1291 TGTCGCAAGGTTTATCAATCACAGATGCGAGGATGCAAACATGATTGATATTCCGGTAGA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1370 TGTCGCAAGGTTTATCAATCACAGATGCGAGGATGCAAACATGATTGATATTCCGATAGA 1429
Query 1351 AATAGAGACGCCTGACAGACATTATTATCATATTGCCTTTTTTACCCTACGGGACGTGAA 1410
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1430 GATAGAGACGCCTGACAGACATTATTATCATATTGCTTTTTTTACCCTACGAGACGTGAA 1489
Query 1411 GGCCATGGATGAGTTGACATGGGATTACATGATAGACTTCAATGATAAAAGTCATCCTGT 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GGCCATGGATGAGTTGACATGGGATTACATGATAGACTTCAATGATAAAAGTCATCCTGT 1549
Query 1471 AAAGGCATTTAGATGTTGCTGCGGAAGCGAATCATGCAGAGACAGAAAAATAGAAGGATC 1530
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1550 AAAGGCATTTAGATGTTGCTGCGGAAGCGAATCATGCAGAGACAGAAAAATAAAAGGATC 1609
Query 1531 TCAAGGCAAGTCTTTAGAGAGAAGAAGGGTTGTTCCTGCTAAAAAACAACAAGGTTCCAA 1590
||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1610 TCAAGGCAAGTCTATAGAGAGAAGAAAGATTGTTTCTGCTAAAAAACAACAAGGTTCCAA 1669
Query 1591 AGCGGTGGCTTTAAAGCGCAAATGAGACCGATCAATATTTAGAGTTAAACATTAAAGAAA 1650
|| |||| || |||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1670 AGAGGTGTCTAAAAAGCGCAAATGAGACTGGTCATTATTTAGAGTTAAACATTAAAGAAA 1729
Query 1651 ACATGAAAC-CGCAAAACACTTTGCTCCATAATGAGCTCTGCATAATTCAGCTAGCTTT- 1708
||||| | | ||||||||| || ||||| ||||||||||| ||||| ||||||||
Sbjct 1730 GCATGAG-CTCACAAAACACTATGATCCATCGCGAGCTCTGCATGATTCAACTAGCTTTT 1788
Query 1709 CCTGGTTGATGA--TATA-A-CTTTTATGGTCTGCAGAtttttttttCCCCGTACAATCT 1764
||| ||||||| |||| | |||||||||||||||| |||||| | | ||||||||
Sbjct 1789 CCTTCTTGATGACATATACAACTTTTATGGTCTGCAG-TTTTTTCT-CATT-TACAATCT 1845
Query 1765 CTTCTTT-G-T---------T---ATGTTGCCTAACTAAAGAAACTCACTGTT-AGTTCT 1809
||||||| | | | |||||||||||| |||||||||||||||| ||||||
Sbjct 1846 CTTCTTTAGGTAAAAAAAAGTGTTATGTTGCCTAACCAAAGAAACTCACTGTTTAGTTCT 1905
Query 1810 GTTCTTGAAATTTCATGGCATA---CAAAATAAATGAACAtttttt 1852
|||||| ||||||||||||||| |||||||||| ||| ||||||
Sbjct 1906 GTTCTTCAAATTTCATGGCATATGTCAAAATAAATAAACCTTTTTT 1951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5