BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477703
Length=2450
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04480.1 | Symbols: | endoribonucleases | chr3:1193630-1197... 3723 0.0
> AT3G04480.1 | Symbols: | endoribonucleases | chr3:1193630-1197397
REVERSE LENGTH=2592
Length=2592
Score = 3723 bits (2016), Expect = 0.0
Identities = 2191/2274 (96%), Gaps = 18/2274 (1%)
Strand=Plus/Plus
Query 51 AGAGAGAGAAAGATGAAGGTCGTGGCTTTAGTGAGTGGAGGCAAAGATAGCTGTTATGCT 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 AGAGAGAGAAAGATGAAGGTCGTGGCTTTAGTGAGTGGAGGCAAAGATAGCTGTTATGCT 125
Query 111 ATGATGAAGTGTATCCACTACGGTCACGAGATCGTGGCATTGGCTAATTTGTTGCCGGTT 170
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATGATGAAGTGTATCCAATACGGTCACGAGATCGTGGCATTGGCTAATTTGTTGCCGGTT 185
Query 171 GATGATTCCGTCGATGAATTGGACAGCTATATGTATCAAACTGTAGGCCACCAGATTATA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 186 GATGATTCCGTCGATGAATTGGACAGCTATATGTATCAAACTGTAGGCCACCAGATTTTA 245
Query 231 GTGGGTTATGCAGAATGTATGAATGTGCCATTGTTCAGAAGAAGAATCCGAGGATCTTCA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 246 GTGGGTTATGCAGAATGTATGAATGTGCCATTGTTCAGAAGAAGAATCCGAGGTTCTTCA 305
Query 291 AGGCATCAGAAACTTAGCTACCAAATGACTCCACATGATGAAGTGGAAGATATGTTTGTC 350
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 306 AGGCATCAGAAACTTAGCTACCAAATGACTCCAGATGATGAAGTGGAAGATATGTTTGTC 365
Query 351 TTGTTAAGTGAAGTGAAGAGACAGATACCTTCCATCACTGCAGTATCGTCTGGTGCCATT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTGTTAAGTGAAGTGAAGAGACAGATACCTTCCATCACTGCAGTATCGTCTGGTGCCATT 425
Query 411 GCATCAGACTACCAACGACTGCGTGTGGAGAGTGTTTGTTCAAGGTTAGGCCTTGTTTCT 470
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 426 GCATCAGACTACCAACGACTGCGTGTGGAGAGTATTTGTTCAAGGTTAGGCCTTGTTTCT 485
Query 471 TTGGCATTTTTGTGGAAACAAGATCAGACATTGCTTCTTCAGGAAATGATAGCAAATGGG 530
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 486 TTGGCATTTTTGTGGAAACAAGATCAGACATTGCTTCTTCAGGACATGATAGCAAATGGG 545
Query 531 ATAAAAGCTATTTTAGTCAAGGTCGCGGCAATAGGGTTAGATCCCTCAAAGCATTTAGGG 590
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ATCAAAGCTATTTTAGTCAAGGTCGCGGCAATAGGGTTAGATCCCTCAAAGCATTTAGGG 605
Query 591 AAAGACTTAGCCTTCATGGAACCATATCTTTTGAAGTTAAAAGAGAAGTATGGAAGTAAT 650
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 606 AAAGACTTAGCCTTCATGGAACCATATCTTTTGAAGTTAAAAGAGAAATATGGAAGTAAT 665
Query 651 GTATGCGGTGAAGGAGGAGAATATGAAACTCTGACTCTAGATTGCCCGCTTTTCACTAAT 710
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GTTTGCGGGGAAGGAGGAGAATATGAAACTCTGACTCTAGATTGCCCGCTTTTCACTAAT 725
Query 711 GCGAGTATCGTGCTTGATGAATATCAAGTTGTGCTACACTCTCCAGATTCCATTGCACCT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GCGAGTATCGTGCTTGATGAATATCAAGTTGTGCTACACTCTCCAGATTCCATTGCACCT 785
Query 771 GTTGGTGTTCTTCATCCATCTACGTTCCATCTTGAAAAGAAAGGGAATCCAGACTCCAAT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 786 GTTGGTGTTCTTCATCCATCTACGTTCCATCTTGAAAAGAAAGGGAATCCAGACTCCCAT 845
Query 831 TCCCCTGAAGAGGAATCGAGTTTAGTGTCTGAGGTACTAGGAGATGGTCCTAACACATCA 890
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCCCCTGAAGAGGAATCAAGTTTAGTGTCTGAGGTACTAGGAGATGGTCCTAACACATCA 905
Query 891 GATTCTACTCGCCAACGAGATAATGGAATCGTTGATCTAGTTGAACACACAAGTAACAGA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GATTCTACTCGCCAACGAGATAATGGAATCGTTGATCTAGTTGAACACACAAGTAACAGA 965
Query 951 CTTCACATATCAAGGACTGAGAAACACAACACATTCTCCATCTGCTGCTGGTTGGAAGAT 1010
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 966 CTTCACATATCAAGGGCTGAGAAACACAACACGTTCTCCATCTGCTGCTGGTTGGAAGAT 1025
Query 1011 TCTAGTGTATCGTCAACAGGTCTGAAAGAAGATCTCGAGACTGTTCTTACAGAACTTGAA 1070
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCTAGTGAATCGTCAAAAGGTCTGAAAGAAGATCTCGAGACTGTTCTTACAGAACTTGAA 1085
Query 1071 TCCCAGCTTTTAAAACGCGGGTATAACTGGCAGCATGTATTGTACATTCATCTTTATATC 1130
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1086 TCCCAGCTTTTAAAACACGGGTATAACTGGCAGCATGTATTGTACATTCATCTATATATC 1145
Query 1131 TCTGACATGAGTGAATTTGCTGTGGCGAATGAGACATATGTGAAATTTATCACACAAGAG 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TCTGACATGAGTGAATTTGCTGTGGCGAATGAGACATATGTGAAATTTATCACACAAGAG 1205
Query 1191 AAGTGCCCTTTCGGTGTTCCTTCCCGTAGTACAATAGAACTTCCTTTGGTACAAGCAGAT 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1206 AAGTGCCCTTTCGGTGTTCCTTCCCGTAGTACAATAGAACTTCCTTTGGTACAAGCGGGT 1265
Query 1251 CTTGGAAAAGCTTACATCGAGGTTTTAGTTGCGAATGACGAAAGCAAAAGAGTTCTCCAT 1310
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1266 CTTGGAAAAGCTTACATCGAGGTTTTAGTCGCGAATGACGAAAGCAAAAGAGTTCTCCAT 1325
Query 1311 GTACAAAGTATATCTTGCTGGGCACCTAGCTGCATTGGACCTTACAGTCAGGCCACTTTG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GTACAAAGTATATCTTGCTGGGCACCTAGCTGCATTGGACCTTACAGTCAGGCCACTTTG 1385
Query 1371 CACAAAAGTGTTCTTCACATGGCTGGACAATTAGGACTTGAcccccccACGATGAATCTT 1430
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1386 CACCAGAGTGTTCTTCACATGGCTGGACAATTAGGACTTGACCCTCCCACGATGAATCTT 1445
Query 1431 CGAAAC-GAAGGCGCAATTGCTGAGCTAAATCAAGCATTGACGAACAGTGAGGCAATAGC 1489
| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1446 C-AAACCGAAGGCGCAATTGCTGAGCTAAATCAAGCATTGACGAACAGTGAAGCAATAGC 1504
Query 1490 ACAGTCTTTTAACTGCTCAATCTCTTCATCAGCTATACTCTTTGTGGTTTTCTGTTCAGC 1549
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1505 AGAGTCTTTTAACTGCTCAATCTCCTCATCAGCTATACTCTTTGTGGTTTTCTGTTCAGC 1564
Query 1550 ACGCACAAAACAATCAGAGAGGAACCAACTTCATGAAAAGTTTGTTACTTTCTTGGATTT 1609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1565 ACGCACAAAACAATCAGAGAGGAACCAACTTCATGAAAAGTTTGTTACTTTCTTGGGTTT 1624
Query 1610 GGCAAAGTCTTCTCGGAGGGTACGGAATGTCCTCGATCCTATGTTCCTTTACATCCTTGT 1669
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 1625 GGCAAAGTCTTCTCGGAGGGTACAGAATGTCCTAGATCCTATGTTCCTTTACATTCTTGT 1684
Query 1670 CCCCGATCTTCCGAAAAGGGCTCTTGTTGAAGTGAAACCTATTTTATACGTGGAAGAAGA 1729
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CCCCGATCTTCCGAAAAGGGCCCTTGTTGAAGTGAAACCTATTTTATACGTGGAAGAAGA 1744
Query 1730 TACGGAAACTGAAGATGAAACCAGCCGAGATCAATCGAGTGAAGGAGATTACAGTTTTTG 1789
||| || || ||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1745 TACAGACACCGAAGATGAAACCAGCCGAGATCAATCGGGTGAAGGACATTACAGTATTTG 1804
Query 1790 GGGATATAAGCCAGAGAAATGGCACCAAGATTGTGTGCAGAAACGAGTTGTTGATGGGAA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 GGGATATAAGCCAGAGAAATGGCACCAAGATTGTGTGCAGAAACGAGTTGTTGATGGGAA 1864
Query 1850 AATGTGTGTGACTGTTCTCTCAATCTCAGCCGAACTAATGAGGAAACTTCAGGGAGAAGA 1909
| |||||||| | |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1865 AGTGTGTGTGGCCGTTCTCTCTATCTCAGCTGAACTAATGAGGAAACTTCAGGGAGAAGA 1924
Query 1910 AGAACAACTGGAGAGAGTATCAAGATTCTGTGTATATCTTCTCAACAAAACCTTGTCTGA 1969
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGAAGAACTGGAGATAGTATCAAGATTCTGTGTATATCTTCTCAACAAAACCTTGTCTGA 1984
Query 1970 AAATTCATTTTCTTGGCAAGACACGACGAGCTTAAGAATACACTTCTCTACTAGTCTTGG 2029
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1985 AAATTCGTTTTCTTGGCAAGACACTACGAGCTTAAGAATACACTTCTCTACTAGTATTGG 2044
Query 2030 TGTGTCCGTAGAGACATTATCGGACATTTTTGCGTCTGCATTCAGAGAGCTTAACGAGAT 2089
|||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 2045 TGTGTCCGTAGAGAGATTATCGGCCATTTTTGTGTCTGCGTTCAGAGAGCTTAACGAGAT 2104
Query 2090 GAGTG--G-AGTAAAAGTCGG-CAGCTCGAAAGAAGATATCTTCAATCTCGTCCCTGTCC 2145
||||| | ||||||| | || ||| | ||||||| |||||||||||||||||||||||
Sbjct 2105 GAGTGATGGAGTAAAAAT-GGACAGTTTGAAAGAACCTATCTTCAATCTCGTCCCTGTCC 2163
Query 2146 TAGGTGCTGGAAACTCTTGTGCTCCACTCGACAACATAATCACCTGTGAACTATTTGCCC 2205
| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2164 TTGGTGCTGGAAACTCTTCTGCTTCACTCGACAACATAATCACCTGTGAACTATTTGCCC 2223
Query 2206 TAAGGTCGTAGCTGTCCTGTTTCACAAGGAACACAAAGGTTTACTTTCTTGATCTTGGGC 2265
||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2224 TAAGGTCGTAGCTTTCCTGTTTCTCAAGGAACACAAAGGTTTACTTACTTGATCTTGGGG 2283
Query 2266 TCATCAAGGGC--C--GG----TTT-ATTT-GCAATGGGTA-GCCAAATTGAAC 2308
||||||||| | | || ||| |||| |||||||||| ||||||||||||
Sbjct 2284 TCATCAAGGTCATCAAGGGCCATTTGATTTTGCAATGGGTAAGCCAAATTGAAC 2337
Score = 185 bits (100), Expect = 1e-45
Identities = 133/148 (90%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 2309 TTTTGGAATACCTTTTCCATTTGCGAAAGAACAACATGTAGTTGTTTTGTTCTAAATGGA 2368
|||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2374 TTTTTGAATACCTTTTCCATTTGCGAAAGAACAACACGTAGTTGTTTTGTTCCAAATGGA 2433
Query 2369 AATGGCACGATGTTTGTTTTTCTCtt-tttt-ttGTTT-CAA-TTGGAGGTGCAAAGACT 2424
|| ||||||||||||||| |||| || |||| || ||| | | |||||||||||||||||
Sbjct 2434 AACGGCACGATGTTTGTTATTCTTTTCTTTTCTTTTTTTCCAGTTGGAGGTGCAAAGACT 2493
Query 2425 GTTTACTTT--GCCAAACCCAGTCCAAA 2450
| ||||||| |||||||||||||||||
Sbjct 2494 GATTACTTTTTGCCAAACCCAGTCCAAA 2521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121554502889
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5