BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477705

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   294    6e-79


> AT1G51080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; 
EXPRESSED DURING: 11 growth stages; Has 101 Blast hits 
to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa 
- 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes 
- 26 (source: NCBI BLink). | chr1:18929744-18930752 REVERSE 
LENGTH=1009
Length=1009

 Score =  294 bits (159),  Expect = 6e-79
 Identities = 273/322 (85%), Gaps = 32/322 (10%)
 Strand=Plus/Plus

Query  343   AGACAGAGTCTGGGGACAGATGATGGCAAAACGGTGACTATG-AGTGAGCAGAAGGGTGT  401
             ||||||||||| |||| |||||||||||| || |||| || | |||||||||||||||||
Sbjct  700   AGACAGAGTCTTGGGAGAGATGATGGCAAGACAGTGAATA-GAAGTGAGCAGAAGGGTGT  758

Query  402   TTTGGGAAAGTTAGAAGATATAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCATTTC-  460
             |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct  759   TTTGGGAAAGCTAGAAGATGTAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCTTTTCC  818

Query  461   TGGTCGTGAGAGTCTGTTGAAGAAATTGATGAACAAGAAGAGAAGGTCTCCGTGAAAAGT  520
             ||||||||||||||||||||||||| | |||||||||| || | ||||||  ||||||||
Sbjct  819   TGGTCGTGAGAGTCTGTTGAAGAAAGTCATGAACAAGA-GA-A-GGTCTCAATGAAAAGT  875

Query  521   TTCTTT-----AA-AA-A----------G-AAGCAAAAAGGCAGATCCTTTAATTTGAGT  562
             ||||||     || || |          | |||||||||| || |||||||  || ||||
Sbjct  876   TTCTTTGGGTTAAGAACATTTCACAAAAGGAAGCAAAAAG-CAAATCCTTT--TT-GAGT  931

Query  563   TTGTGTAACTGAAAATTACAAACTTTGCTTCTATATGCTAAACTTAAATCAATCAATCAA  622
             |||||||| |||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  932   TTGTGTAATTGAAAAATACAAACTTTGCTTTTATATGCTAAACTTGAATCAATCAATCAA  991

Query  623   TCAATTCAAAGAAACTTCCTAC  644
             |   | ||||||||||||||||
Sbjct  992   T---T-CAAAGAAACTTCCTAC  1009


 Score =  261 bits (141),  Expect = 6e-69
 Identities = 199/225 (88%), Gaps = 11/225 (5%)
 Strand=Plus/Plus

Query  4    GAAGAACTCTTTCTTTATCTAATCGTATCTTCCCCTCCCCCAATGAACCTAAACCCTTGG  63
            |||||| |||||||| ||||||| |||||||   |||| ||||| |  ||||||||    
Sbjct  110  GAAGAAATCTTTCTTCATCTAATGGTATCTT---CTCCACCAATCAGTCTAAACCC----  162

Query  64   TTaaaaaaaaaaCTTCAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTT  123
            ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  163  TTAATCAAAAAACTTCAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTC  222

Query  124  GGCAACCACAAGGGCAAAATGCTTGGTGCTTTGCCTTCTTCTTACCTCAAAATGGGTCTC  183
            ||||| ||||||||||||||||||||| |||||||||||||||| || ||| ||||||||
Sbjct  223  GGCAAACACAAGGGCAAAATGCTTGGTACTTTGCCTTCTTCTTATCTTAAA-TGGGTCTC  281

Query  184  AAAGAATCTTCGTGCAGCGA-TTCT-GAGTATTGGGCAAAGCTTG  226
            ||||||||||||||||| || || | |||||||||||||||||||
Sbjct  282  AAAGAATCTTCGTGCAG-GAGTTTTTGAGTATTGGGCAAAGCTTG  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31094936993


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5