BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477706
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1336 0.0
> AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1211762-1213855 REVERSE LENGTH=1101
Length=1101
Score = 1336 bits (723), Expect = 0.0
Identities = 786/817 (96%), Gaps = 2/817 (0%)
Strand=Plus/Plus
Query 1 CGATTCGGCG-TTTAGCTTCTCCGATGTCAATCCCACCATCTTCAGCTTCTTCTTCTTCA 59
|||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 38 CGATTCGGCGATTT-GCTTCTCCGATGTCAATCCCACCATCTTCAGGTTCTTCTTCTTCA 96
Query 60 TCTTCCTCGTCTCAGTACACATACGCTGCTAATTCTTACTATTCCGCTCCGTATCAGCCT 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 97 TCTTCCTCGTCTCAGTACACATACGCAGCTAATTCTTACTATTCCGCTCCGTATCAGCCT 156
Query 120 CCACAGCCTTACGCGGCGGCGCCTTCGCCTGCTGTACCGGCGCCGGTGGCATCCATTCCC 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 157 CCACAGCCTTACGCGGCGGCGCCTTCGCCTGCTGTACCGGCGCCTGTGGCATCCATTCCC 216
Query 180 GGAGCTACGGTCTATCCTCAGCCTGTTGGACCGGTTCCTGCCGTATACGCTTACCCACAG 239
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 217 GGAGCTACGGTCTATCCTCAGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAG 276
Query 240 TACCAGCAGGCACATCAATTGTTTCAGAGAGATGCACAGACAATTACGCCAGAAGCTCTT 299
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 277 TACCAACAGGCACATCAATTGTTCCAAAGAGATGCACAGACAATTACACCAGAAGCTCTT 336
Query 300 GAGAATGTAAAAGCTGCTTTGGCAAGTAGTGAAACCGAACACAAAGCAGAAACTAAAAAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GAGAATGTAAAAGCTGCTTTGGCAAGTAGTGAAACCGAACACAAAGCAGAAACTAAAAAG 396
Query 360 AGAGCCATTCCTCGTAAAGCTGCTGGACAGTCTTGGGAGGATCCTACTCTATCAGAGTGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 397 AGAGCCATTCCTCGTAAAGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGG 456
Query 420 CCAGAAAATGACTATCGCCTGTTCTGTGGTGATCTTGGGAATGAAGTGAATGATGATGTT 479
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 457 CCAGAAAATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGTT 516
Query 480 CTTTCCAAGGCATTTACTCGATTCCCCACCTTCAATATGGCCAAGGTCATTAGAGATAAG 539
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTTTCCAAAGCATTTGCTAGATTCCCCACCTTCAATATGGCCAAGGTCATTAGAGATAAG 576
Query 540 CGGACTGGTAAAACCAAGGGTTATGGGTTTGTGAGTTTCTCAAATCCTGCGGATCTAGCA 599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 577 CGGACTGGTAAAACCAAGGGTTATGGGTTTGTGAGTTTCTTAAATCCTGCGGATCTAGCA 636
Query 600 GCAGCCCTAAAAGAAATGAATGGTAAGTATGTTGGAAACCGTCCTATAAAACTACGAAAG 659
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 637 GCAGCCTTAAAAGAAATGAATGGTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAG 696
Query 660 AGCAGCTGGAAAGAGAGGACAGACCAGGAGGCTGCTGAAAGACAAAAGCATCACAGCAAT 719
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 697 AGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAGCATCACAGCAAT 756
Query 720 AAGAAGCAAAAAACTATGAAGAAGAGCGTACTTCACAAGTGACGATCTCTTTTATTTTTG 779
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 757 AAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAGTGACGATCTCTTTTATTTTTG 816
Query 780 TGGCTTTAACTTTCTAAACCTGTTACTCAAAAATATA 816
|||||| || |||| |||||||||||||| |||||||
Sbjct 817 TGGCTTAAAATTTCCAAACCTGTTACTCATAAATATA 853
Score = 165 bits (89), Expect = 7e-40
Identities = 121/135 (90%), Gaps = 7/135 (5%)
Strand=Plus/Plus
Query 843 TTTAGCCCCAACCGGTGGTATTTACTTTATGAAAACGTGTTTCCTTAATAAGCTCGAGCA 902
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 925 TTTAGCCCCAACCGGTGGTATTTACTTTATGAAAACGTGTGTCCACAATAGGCTCGAGCA 984
Query 903 CAAACTTCTCTTACATCTTTTT-AGCTCCATTAA--CGACCAAGTGGTCTGAGCATAATA 959
||||||| |||||||||||||| | ||||||||| || ||||||||||||||||| |
Sbjct 985 CAAACTTTTCTTACATCTTTTTCA-CTCCATTAAAACGTTCAAGTGGTCTGAGCATA-T- 1041
Query 960 TTACAAGAAAATCAA 974
| |||||||||||||
Sbjct 1042 T-ACAAGAAAATCAA 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5