BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477707
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04510.1 | Symbols: LSH2 | Protein of unknown function (DUF6... 1755 0.0
> AT3G04510.1 | Symbols: LSH2 | Protein of unknown function (DUF640)
| chr3:1215636-1216958 REVERSE LENGTH=1323
Length=1323
Score = 1755 bits (950), Expect = 0.0
Identities = 1227/1348 (91%), Gaps = 69/1348 (5%)
Strand=Plus/Plus
Query 1 GTGTCTTTAATGGAAAATTTATGATTTCTGATGATCAGTCTCACGA-TCTCATCTCTTTC 59
||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GTGTCTTAAATGGAAAATATATGATTTCTGATGATCAGTCTCACGACTCTCATCTCTTTC 60
Query 60 TCTTTCTCTATAAATGACCTATTATGATGTTTTTGCAGCTATATATACGGACATTTGTGT 119
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 TCTTTCTCTATAAATGACCTATTATGATGTTTATGCAGCTATATATATGGACATTTGTGT 120
Query 120 C--TATTTTTCTATCCATCTTCTCATTCAATAGTagaaaagaggaaaaacacaaaagaca 177
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTGTATTTTTCTATCCATCTTCTCATTCTATAGTAGAAAAGAGGAAAAACACAAAAGACA 180
Query 178 acagtagaaaa-g-g--agaaag--aaaTTCT-AC-TTG-TATC-TCT-C----ATCT-T 221
||||||||||| | | |||||| ||| ||| || ||| | || ||| | |||| |
Sbjct 181 ACAGTAGAAAAGGAGAAAGAAAGAAAAAATCTCACTTTGATTTCTTCTACTTATATCTCT 240
Query 222 GAAATTaaaaaaaaGCAAGAGGTCTCTTCTTATTTTGCAGGTTGTTCCTCTTTGCCTCAC 281
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATCTTGCAAAAAAGCAAGAGGTCTCTTCTTATTTTGCAGGTTGTTCCTCTTTGCCTCAC 300
Query 282 CATTTTTGAACAACATCATCTGATCATCATCACTGAATCTATCCTTTTTTGAAGCACCTA 341
||| |||| |||| | | ||||||||||||||||||||||||||||| ||||||||
Sbjct 301 CATATTTG---AACA--A-C--ATCATCATCACTGAATCTATCCTTTTTTGTAGCACCTA 352
Query 342 CCTCACCACTTTGCAGTACAAGGAAGTATCCAAGT-CTTCATTCTATCTCTCTCTTTT-G 399
|||||||||||||||||||||||||||| |||||| | | ||||||||||||| |||| |
Sbjct 353 CCTCACCACTTTGCAGTACAAGGAAGTAGCCAAGTGC-TAATTCTATCTCTCT-TTTTAG 410
Query 400 TTA-CT-TTAT-TATACCCTTTAACCaaaaaaaGTTATTTAATTATTATAAATAACTAAA 456
||| | |||| |||| |||||||||| ||||||||| | ||||||||||||||| ||
Sbjct 411 TTATTTATTATATATATCCTTTAACCAGAAAAAGTTA--T--TTATTATAAATAACTTAA 466
Query 457 AACCTAATCTTTGCCCTAAATCACTCAAACTCGATCTGGTGAAAGAACCCTAATTTAGAA 516
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 467 AACCTAATCTTTGCCCTAAATCACTC-AACTCGATCTGGAGAAAGAACCCTAATTTGGAA 525
Query 517 AC--ATCTAAAAAGCTATGGATTTGATCTCTCAAAACCACCACAGCAGAAACCCTAATAC 574
|| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 526 ACATATCTAAAAAGCTATGGATTTGATCTCTCAAAACCACAACAACAGAAACCCTAATAC 585
Query 575 CAGTCTCTCGACGCAAACTCCTTCTTCCTTTTCTTCTCCACCATCCTCTAGCCGCTACGA 634
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 586 CAGTCTCTCGACGCAAACCCCTTCTTCCTTTTCTTCTCCACCTTCCTCTAGCCGCTACGA 645
Query 635 GAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAATACCTCAGAAACCACCATCCGCC 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 646 GAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAATACCTCAGAAACCACCATCCACC 705
Query 695 GCTCTCTCTAGCGTCTTGCAGCGGTGCACACGTCCTCGATTTTCTGCGTTACCTTGACCA 754
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 706 GCTCTCTCTAGCTTCTTGCAGTGGCGCACACGTCCTCGATTTTCTGCGTTACCTTGACCA 765
Query 755 GTTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCCTTCTTTGGCCTCCCAAATCCACC 814
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 ATTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCCTTCTTTGGCCTCCCAAATCCACC 825
Query 815 GGCCCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGCTCACTCGACGCCCTCATTGGTCG 874
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GGCTCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGCTCACTCGACGCCCTCATTGGTCG 885
Query 875 TCTCCGTGCAGCCTACGAGGAGAACGGTGGAGCTCCCGAGTCTAGCCCTTTTGGCTCACG 934
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 886 TCTCCGTGCAGCCTACGAGGAGAACGGTGGCGCTCCCGAGACTAGCCCTTTTGGCTCACG 945
Query 935 GTCCGTCAGGATTTTCCTCAGGGAGGTTAGAGATTTCCAGGCTAAATCACGTGGCGTTTG 994
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 946 GTCCGTCAGGATTTTCCTCAGGGAGGTTAGAGATTTCCAGGCTAAGTCACGTGGTGTTAG 1005
Query 995 CTATGAGAAGAAGAGGAAAAGGGTCAACAACAAGCAAATAACTCAGTC---------G-C 1044
|||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1006 CTATGAGAAGAAGAGGAAAAGGGTCAACAACAAGCAAATAACTCAGTCCCAACCACAGTC 1065
Query 1045 --AACCGCCTTTACCACAGCAGCCGCAGCAGGAGCAAGGTCAGTCTATGATGGCTAATTA 1102
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1066 CCAACCGCCTTTACCCCAGCAGCCACAGCAGGAGCAAGGTCAGTCTATGATGGCTAATTA 1125
Query 1103 CCACCATGGTGCAACTCATTAATATCGTATTACTTCCATATATATATGCTCGCATCTAGC 1162
|||||| ||||||||||| |||| |||||| |||| ||| ||| |||||||||||||
Sbjct 1126 CCACCACGGTGCAACTCAATAATGTCGTATAACTT---TATGTAT--GCTCGCATCTAGC 1180
Query 1163 TATTTATA-C---GT-TCCAACCTTTGTATTTGTGTCATGCAATCCCTATT-TCCTCCAT 1216
|||||||| | || || |||||||||||| |||| | |||||||||||| |||||||
Sbjct 1181 TATTTATATCTACGTATC-AACCTTTGTATTCGTGTAACGCAATCCCTATTCTCCTCCAC 1239
Query 1217 TATCCACTGTTAATTTATATCATTGTTTCTTAATTACACCTATTGTTTTGTCTTTTCTTA 1276
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1240 ---CCACTGTTAATTTATATCATTGTTTCTTAATTAGACCTATTGTTTTGT-TTTTCTTA 1295
Query 1277 TAATCAATAAGTTAAATGAACTTGGATT 1304
|||||||||| | ||| |||||||||||
Sbjct 1296 TAATCAATAAATGAAAAGAACTTGGATT 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5