BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477713
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04570.1 | Symbols: AHL19 | AT-hook motif nuclear-localized ... 2137 0.0
> AT3G04570.1 | Symbols: AHL19 | AT-hook motif nuclear-localized
protein 19 | chr3:1230986-1232328 FORWARD LENGTH=1343
Length=1343
Score = 2137 bits (1157), Expect = 0.0
Identities = 1291/1354 (95%), Gaps = 16/1354 (1%)
Strand=Plus/Plus
Query 1 TTAGTATCATTCTTTGTCGTGTTGTTTTAATTAACCTTTTTCGCAAATTGTGTTGTGTTT 60
||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||
Sbjct 1 TTAGTATCATTCTTTGTCGTGTTCTTTTAATTAACC-TTTT-GCAATTTGTCTTGTGTTT 58
Query 61 CTCACAACACAAAAACTTGTAAAAGTGTTAAAAAATCAGGATCTGAAAAATCTTATCACC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 59 CTCACAACACAAAAACTTGTAAAAGTGTTAAAAAATCAAGATCTGAAAAATCTTATCACC 118
Query 121 TCTTCTAGGTTTTTCAG--TTTTTTCTTCATCTTCCTGATCTAAATTTACTTATAATTCT 178
|||||||||||||||| |||||||||| | ||||||||||||||| ||||||| ||||
Sbjct 119 GCTTCTAGGTTTTTCAGTTTTTTTTCTTCCTTTTCCTGATCTAAATTAACTTATATTTCT 178
Query 179 TAGGGTTTCACTTCTTAAAAGATATAATCATAAATCAGAATTTAACCTCCCTAGGGCATT 238
|||||||||||||||| ||| || |||||| ||| || |||||||| ||||||| ||
Sbjct 179 TAGGGTTTCACTTCTTGAAACATTTAATCA-GAAT--TAA-TTAACCTCTCTAGGGCTTT 234
Query 239 CATGGCGAATCCATGGTGGACAGGACAAGTGAACCTCTCCGGCCTCGAAACGACGCCGCC 298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 235 CATGGCGAATCCATGGTGGACAGGACAAGTGAACCTATCCGGCCTCGAAACGACGCCGCC 294
Query 299 TGGTTCCTCTCAGTTAAAGAAACCAGATCTCCACATCTCCATGAACATGGCCATGGACTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TGGTTCCTCTCAGTTAAAGAAACCAGATCTCCACATCTCCATGAACATGGCCATGGACTC 354
Query 359 AGGTCACAACAACCATCATCATCACCAAGAAGTCGATAACAACAACAACGACGACGATAG 418
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGGTCACAATAATCATCACCATCACCAAGAAGTCGATAACAACAACAACGACGACGATAG 414
Query 419 AGACAACTTGAGTGGAGACGACCACGAGCCACGTGAAGGAGCCGTAGAAGCCCCCACGCG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AGACAACTTGAGTGGAGACGACCACGAGCCACGTGAAGGAGCCGTAGAAGCCCCCACGCG 474
Query 479 CCGTCCACGTGGACGCCCTGCTGGTTCTAAGAACAAACCAAAGCCACCGATCTTCGTCAC 538
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 CCGTCCACGTGGACGTCCTGCTGGTTCCAAGAACAAACCAAAGCCACCGATCTTCGTCAC 534
Query 539 GCGTGATTCCCCAAACGCTCTCAAGAGCCATGTCATGGAGATCGCTAGTGGTACTGACGT 598
|| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 TCGCGATTCTCCAAATGCTCTCAAGAGCCATGTCATGGAGATCGCTAGTGGGACTGACGT 594
Query 599 CATCGAAACCCTAGCTACTTTTGCTAGGCGGCGTCAACGTGGCATCTGCATCTTAAGCGG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 CATCGAAACCCTAGCTACTTTTGCTAGGCGGCGTCAACGTGGCATCTGCATCTTGAGCGG 654
Query 659 AAACGGCACAGTGGCTAACGTCACCCTCCGTCAACCCTCGACGGCTGCGGTTGCGGCAGC 718
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 655 AAATGGCACAGTGGCTAACGTCACCCTCCGTCAACCCTCGACCGCTGCCGTTGCGGCGGC 714
Query 719 TCCTGGTGGTGCGGCAGTTTTGGCTTTACAAGGGAGGTTTGAGATTCTTTCTTTAACAGG 778
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 TCCTGGTGGTGCGGCTGTTTTGGCTTTACAAGGGAGGTTTGAGATTCTTTCTTTAACCGG 774
Query 779 TTCTTTCTTGCCAGGACCGGCTCCACCTGGTTCCACCGGTTTAACGATTTACTTAGCCGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTCTTTCTTGCCAGGACCGGCTCCACCTGGTTCCACCGGTTTAACGATTTACTTAGCCGG 834
Query 839 TGGTCAAGGTCAGGTTGTTGGAGGAAGCGTGGTGGGTCCATTGATGGCGGCTGGTCCAGT 898
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 835 TGGTCAAGGTCAGGTTGTTGGAGGAAGCGTGGTGGGCCCATTGATGGCAGCAGGTCCGGT 894
Query 899 GATGCTCATTGCGGCCACGTTCTCTAACGCGACTTACGAGAGATTGCCATTGGAGGAGGA 958
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GATGCTGATCGCCGCCACGTTCTCTAACGCGACTTACGAGAGATTGCCATTGGAGGAGGA 954
Query 959 AGAGGCAGCAGAGAGAGGCGGTGGTGGAGGCAGCGGAGGAGTGGTTCCGGGGCAGCTCGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGAGGCAGCAGAGAGAGGCGGTGGTGGAGGCAGCGGAGGAGTGGTTCCGGGGCAGCTCGG 1014
Query 1019 AGGGGGAGGTTCGCCACTGAGCAGCGGTGCTGGTGGAGGCGACGGTAACCAAGGACTTCC 1078
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGGCGGAGGTTCGCCACTAAGCAGCGGTGCTGGTGGAGGCGACGGTAACCAAGGACTTCC 1074
Query 1079 GGTGTATAATATGCCCGGAAATCTTGTTTCTAATGGTGGCAGTGGCGGAGGA---CAGAT 1135
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1075 GGTGTATAATATGCCGGGAAATCTTGTTTCTAATGGTGGCAGTGGTGGAGGAGGACAGAT 1134
Query 1136 GAGCGGCCAAGAAGCTTATGGTTGGGCTCAAGCTAGGTCAGGATTTTAACGTGCGTTGAA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1135 GAGCGGCCAAGAAGCTTATGGTTGGGCTCAAGCTAGGTCAGGATTTTAACGTGCGTTAAA 1194
Query 1196 ATGGCTTTTTAATTTACAGAAGTTAACAATAAGAATTATAATGATGTTTATTATGATGAT 1255
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1195 ATGG-TTTTTAATTTACAGAAGTTAACAATAAGA-TTATAATGATGTTTATTATGATGAT 1252
Query 1256 GATGAAAACCAGTCAGTTGCTACTTGTTACTAGTGAGCTATATAGTGTGTGGACATTATA 1315
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1253 GA--AAA-CCAGTCAGTTGCTACTTGTTACTAGTGAGCTATATAGTTTGTGGACATTATA 1309
Query 1316 TTATGTTCTCTCTTGACTATGATTATTATTTGCT 1349
||||||||||||||||||||||||||||||||||
Sbjct 1310 TTATGTTCTCTCTTGACTATGATTATTATTTGCT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5