BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477715
Length=2757
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04580.1 | Symbols: EIN4 | Signal transduction histidine kin... 2396 0.0
> AT3G04580.1 | Symbols: EIN4 | Signal transduction histidine kinase,
hybrid-type, ethylene sensor | chr3:1235283-1238475 REVERSE
LENGTH=3104
Length=3104
Score = 2396 bits (1297), Expect = 0.0
Identities = 1460/1534 (95%), Gaps = 29/1534 (2%)
Strand=Plus/Plus
Query 1251 CTTCGAGCAAAACAGAACGCGATGATGGCAAGTCAAGCGAGGAACACCTGCCAGAAAGTG 1310
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1573 CTTCGAGCAAAACAGAACGCGATGATGGCAAGTCAAGCGAGGAACACTTGCCAGAAAGTG 1632
Query 1311 ATGAGTCATGGAATGAGGAGACCAATGCACACAATTCTTGGTCTCCTCTCCATGTTTCAG 1370
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1633 ATGAGTCATGGAATGAGGAGACCAATGCACACAATTCTTGGTCTACTCTCCATGTTTCAG 1692
Query 1371 TCCGAAAGTATGAGTCTTGACCAGAAAATCATCGTTGATGCGCTCATGAAAACAAGCACA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TCCGAAAGTATGAGTCTTGACCAGAAAATCATCGTTGATGCGCTCATGAAAACAAGCACA 1752
Query 1431 GTTCTCTCTGCTTTAATCAACGACGTGATCGACATTTCGCCTAAAGATAACGGGAAATCT 1490
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1753 GTTCTCTCAGCTTTAATCAACGACGTGATTGACATTTCGCCTAAAGATAACGGGAAATCT 1812
Query 1491 GCATTAGAGGTTAAACGGTTCCAGCTACATTCCTTGATAAGAGAAGCTGCTTGCGTTGCT 1550
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1813 GCATTAGAGGTTAAACGGTTCCAGCTACATTCCTTGATAAGAGAAGCCGCTTGTGTTGCT 1872
Query 1551 AAATGCTTGAGCGTTTACAAAGGTTACGGTTTCGAGATGGATGTTCAAACGCGGTTGCCT 1610
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1873 AAATGCTTAAGCGTTTACAAAGGTTACGGTTTTGAGATGGATGTTCAAACGCGGTTGCCT 1932
Query 1611 AATTTAGTAGTGGGAGATGAAAAGAGAACGTTTCAGCTTGTGATGTATATGCTTGGGTAT 1670
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 AATTTAGTAGTAGGAGATGAAAAGAGAACGTTTCAGCTTGTGATGTATATGCTTGGGTAT 1992
Query 1671 ATCTTGGATATGACTGATGGGGGCAAAACCGTTACATTCCGAGTTATCTCTGAAGGTACT 1730
|||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 1993 ATCTTGGATATGACTGATGGAGGCAAAACCGTTACGTTCCGAGTTATCTGTGAAGGTACT 2052
Query 1731 GGAACTAGTCAGGACAAGAGCAAAAGAGAGACTGGAATGTGGAAATCGCATATGTCCGAT 1790
||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 2053 GGAACAAGTCAGGACAAGAGCAAAAGAGAAACTGGAATGTGGAAGTCCCATATGTCCGAT 2112
Query 1791 GATTCCCTCGGTGTGAAATTTGAAGTTGAGATTAATGAGATTCAGAATCCTCCATTGGAT 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 GATTCCCTCGGTGTGAAATTTGAAGTTGAGATTAATGAGATTCAGAATCCTCCATTGGAT 2172
Query 1851 GGTTCAGCTATGGCAATGAGACATATTCCGAACAGAAGGTATCATAGCAATGGAATTAAG 1910
||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2173 GGTTCGGCTATGGCTATGAGACATATTCCGAACAGAAGATATCATAGCAATGGGATTAAG 2232
Query 1911 GAAGGTTTGAGCTTAGGCATGTGTAGAAAACTTGCACAGATGATGCAAGGAAACATATGG 1970
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2233 GAAGGCTTGAGCTTAGGCATGTGTAGAAAACTTGCACAGATGATGCAAGGAAACATATGG 2292
Query 1971 ATATCACCTAAATCGCATGGACAAACACAGAGTATGCAATTAGTTCTGAGGTTTCAGACA 2030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2293 ATATCACCTAAATCGCATGGACAAACACAGAGTATGCAATTAGTTCTGAGGTTTCAGACA 2352
Query 2031 AGACCTTCGATTAGGAGATCAATTTTAGCAGGCAATGCTCCAGAGCTTCAACATCCGAAT 2090
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2353 AGACCATCGATTAGGAGATCAATCTTAGCAGGAAATGCTCCAGAGCTTCAACATCCGAAT 2412
Query 2091 TCAAATTCGATTCTTCGGGGTTTAAGAATCACTCTAGCAGACGATGATGATGTCAACAGA 2150
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2413 TCAAATTCCATTCTTCGTGGTCTAAGAATCACTCTAGCAGACGATGATGATGTCAACAGA 2472
Query 2151 ACCGTGACTAAGAGACTTCTTGAGAAACTCGGCTGCGAAGTGACTGCTGTCTCGTCTGGT 2210
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2473 ACCGTGACTAAGAGACTTCTTGAGAAACTCGGCTGCGAAGTAACTGCTGTCTCGTCTGGA 2532
Query 2211 TTTGAGTGTTTGAGTGCATTGTCAAATGTGGAAATGTCGTATAGAGTTGTGATTTTGGAT 2270
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2533 TTTGAGTGTTTGAATGCGTTGTCAAATGTGGAAATGTCGTATAGAGTTGTGATTTTGGAT 2592
Query 2271 CTGCAGATGCCGGAGATGGATGGTTTCGAAGTAGCTATGAAGATAAGGAAGTTTTGTGGA 2330
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2593 CTGCAGATGCCGGAGATGGATGGTTTCGAAGTAGCAATGAAGATAAGGAAGTTTTGTGGA 2652
Query 2331 CATCATTGGCCATTGATTATAGCTTTGACTGCGAGTACTGAAGATCATGTTAGGGAAAGA 2390
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2653 CATCATTGGCCATTGATTATAGCTTTGACTGCTAGTACTGAAGATCATGTTAGGGAAAGA 2712
Query 2391 TGTTTGCAAATGGGGATGAATGGTATGATTCAGAAACCGGTGCTTTTGCATGTTATGGCT 2450
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2713 TGTTTGCAAATGGGGATGAATGGTATGATCCAGAAACCGGTTCTTTTGCATGTTATGGCT 2772
Query 2451 TCTGAGCTTAGACGGGCTTTGCAGAGCGCAAGCGAATGAAGCGAGCTCAGAGAAGGAAGC 2510
||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||
Sbjct 2773 TCTGAGCTTAGACGGGCTTTGCAGACCGCGAGCGAGTGATTCGAGCTCAGAGAAGGAAGC 2832
Query 2511 AG--------GAATC---AA--G-AA---TCTTGAAA--AAGAAAAGCAGAGTGAGGATT 2551
|| ||||| || | || |||||||| |||||||||||||||||||||
Sbjct 2833 AGATATCAATGAATCTTGAAAAGCAAAAATCTTGAAACGAAGAAAAGCAGAGTGAGGATT 2892
Query 2552 CTTTGAAGATGTGAAGCATCA-AGAC-C-TCTCTGGGGA--TGTGTTT-TTGTTGTTGTT 2605
||||||||||||||||||| | |||| | |||||||||| ||| ||| |||||||||||
Sbjct 2893 CTTTGAAGATGTGAAGCAT-AGAGACACCTCTCTGGGGAAATGTTTTTGTTGTTGTTGTT 2951
Query 2606 GTCTCAGTTCTAC-GATGATGAGAATTGAGTCAGTTTTCTCCATTTAGCCTAGTTTGGAG 2664
||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2952 GTCTCGGTTCTACAG-TGATGAGAATTGAGTCAGTTTTCTCTATTTAGCCTAGTTTGGAG 3010
Query 2665 ATTGGTTGGTTCGAAACTATTTATACGTAATGATTTCGCATTTTTAGCGGAAAA-TAACA 2723
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 3011 ATTGGTTGGTTCGAAACTATTTATACGTAATGATTTCGCATTTTTAGCGAAAAAATAACA 3070
Query 2724 TAATTTTATTAGATTTAATAATAATTAATTTTAT 2757
||| ||||||||||||||||||||||||||||||
Sbjct 3071 TAAGTTTATTAGATTTAATAATAATTAATTTTAT 3104
Score = 1663 bits (900), Expect = 0.0
Identities = 1020/1075 (95%), Gaps = 20/1075 (2%)
Strand=Plus/Plus
Query 1 TTTTCTCTGATTACCCTCCTCTGGAATTTTCCCGGaaaaaaaaaaaaaCTTAAAGTCGGT 60
||||||||||||||| ||| |||||| ||| |||||||||||||| |||| ||||
Sbjct 221 TTTTCTCTGATTACCTTCCCCTGGAA-TTT------AAAAAAAAAAAACTCAAAGGCGGT 273
Query 61 TTCTTTTCTCACTACTTCGAATATCGAGGAACATAGATCTTGA-----TT-CCTTCTTCT 114
||||||||||| |||| |||||||||||||||||||||||||| || |||||||||
Sbjct 274 TTCTTTTCTCAGTACTACGAATATCGAGGAACATAGATCTTGATTCCTTTGCCTTCTTCT 333
Query 115 GGGTATGCGTGTTTGAAGTTCG-TTAATCTCATTGGTGTCTACGCGTTGTGGAAATCTAT 173
||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 334 GGGTATGCGTGTTTGGAGTT-GTTTAATCTCATTGGTCTCTACGCGTTGTGGAAATCTAT 392
Query 174 GAATACCAAGTCAGTTATTTTTAATTTGGTTCATTGGATCTCAACTTGTAGAGAGCCTCA 233
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 393 GAATACCAAGTCAGTTATGTTTAA-TTGGTTCATTGGATCTCAACTTGTAGAGAGCCTCA 451
Query 234 AGGCTGAGACTGGATTTGATTAGGGTTTTAGAT--AGAGATTAAAGATTGGATCAGAAGA 291
|| || | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 452 AGATTGTGGCTGGATTTGATTAGGGTTTTAGATAGAGAGATTAAAGATTGGATCAGAAGA 511
Query 292 TGTTAAGATCCTTAGGTCTTGGATTGCTTTTGTTTGCTCTTCTTGCTCTGGTTTCTGGTG 351
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 512 TGTTAAGATCTTTAGGTCTTGGATTGCTTCTGTTTGCTCTTCTTGCTCTGGTTTCTGGTG 571
Query 352 ATAATGATTACGTGAGCTGTAACTGTGACGACGAAGGTTTCTTAAGTGTCCACACCATCT 411
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 572 ATAACGATTACGTGAGCTGTAATTGTGACGACGAAGGTTTCTTAAGTGTCCACACCATCT 631
Query 412 TAGAATGTCAAAGAGTGAGTGATCTCTTAATCGCCATTGCCTATTTCTCTATACCTCTCG 471
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 632 TAGAATGTCAAAGAGTGAGTGATCTCTTAATAGCCATTGCCTATTTCTCAATACCTCTCG 691
Query 472 AGCTTCTCTACTTCATTAGCTTCTCCAACGTTCCTTTCAAATGGGTTCTTGTTCAATTCA 531
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 692 AGCTTCTCTACTTCATTAGCTTCTCCAATGTTCCTTTCAAATGGGTTCTTGTTCAATTCA 751
Query 532 TTGCCTTTATTGTTCTCTGTGGAATGACTCATTTGCTTAACGCTTGGACGTATTACGGAC 591
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTGCCTTTATTGTCCTATGTGGAATGACTCATTTGCTTAACGCTTGGACGTATTACGGAC 811
Query 592 CACACTCTTTCCAGCTTATG-TTATGGCTTACCATCTTTAAATTCCTCACGGCGCTTGTC 650
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 812 CACACTCTTTCCAGCTTATGCTT-TGGCTTACCATCTTTAAATTCCTCACGGCGCTTGTC 870
Query 651 TCGTGTGCCACGGCGATTACGCTCTTGACTTTGATTCCGTTGCTGTTGAAGTGGAAAGTT 710
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 871 TCGTGTGCCACGGCTATCACGCTCTTGACTTTGATTCCGTTGCTGTTGAAATGGAAAGTT 930
Query 711 AGAGAGCTTTATTTGAAGCAGAATGTGTTGGAGCTTAATGAAGAGGTTGGATTGATGAAG 770
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 AGAGAGCTTTACTTGAAGCAGAATGTGTTGGAGCTTAATGAAGAGGTTGGATTGATGAAG 990
Query 771 AGGCAGAAGGAAATGAGTGTGCACGTTAGAATGCTTACTCGGGAAATCAGGAAATCGCTC 830
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 991 AGGCAGAAGGAAATGAGTGTGCAGGTGAGAATGCTTACTCGGGAGATCAGGAAATCGCTC 1050
Query 831 GATAAGCATATGATTCTGCGGACTACTCTTGTCGAGCTATCCAAGATTCTTGATTTACAG 890
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1051 GATAAGCATATGATTCTGCGGACTACTCTCGTTGAGCTATCCAAGATTCTTGATTTACAG 1110
Query 891 AACTCTGCTGTTTGGATGCCTAACGAGAACAGAACCGAGATGCATTTGACTCATGAGCTA 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AACTCTGCTGTTTGGATGCCTAACGAGAACAGAACCGAGATGCATTTGACTCATGAGCTT 1170
Query 951 AGAGCAAATCCGATGAGGAGTTTCCGGGTAATCCCGATTAATGATCCCGATGTTGTTCAG 1010
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1171 AGAGCGAATCCGATGAGGAGTTTCAGGGTAATCCCGATTAATGATCCCGATGTTGTTCAG 1230
Query 1011 GTTAGGGAGACCAAAGTAGTGACGATTTTGAGGAAAAACTCTGTTCTTGCGGTTG 1065
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1231 GTTAGGGAGACCAAAGTAGTGACAATTTTGAGGAAAAACTCTGTTCTTGCGGTTG 1285
Score = 171 bits (92), Expect = 5e-41
Identities = 105/111 (95%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 1063 TTGGTCCGGTTGCCGCAATTCGAATGCCGATGCTTCACGGATTGAATTTCAAAGGAGGAA 1122
|||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1316 TTGGACCGGTTGCTGCAATTCGGATGCCGATGCTTCACGGATTGAATTTCAAAGGAGGCA 1375
Query 1123 CTCCTGAGTTTGTGGATACTCCTTATGCTATAATG-TTTTGGTACTTCCGA 1172
|||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1376 CTCCCGAGTTTGTGGATACTCCTTATGCTATAATGGTTTTGGTACTTCCGA 1426
Score = 115 bits (62), Expect = 2e-24
Identities = 66/68 (97%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1176 GAGATAGCGGAAGTTGTTGCTGATCAAGTAGCAGTTGCTATCTCTCATGCCTCAGTTCTC 1235
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1462 GAGATAGCGGAAGTTGTTGCTGATCAAGTAGCGGTTGCTATCTCTCATGCCTCAGTTCTT 1521
Query 1236 GAAGAATC 1243
||||||||
Sbjct 1522 GAAGAATC 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136955754390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5