BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477717
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04590.2 | Symbols: | AT hook motif DNA-binding family prot... 2385 0.0
> AT3G04590.2 | Symbols: | AT hook motif DNA-binding family protein
| chr3:1238853-1241640 REVERSE LENGTH=1665
Length=1665
Score = 2385 bits (1291), Expect = 0.0
Identities = 1542/1657 (93%), Gaps = 42/1657 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTAAAAAGGAATGGAACCTAACGAAagccaccatcacca-c--caacaacagctt 57
|||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 23 TCTCTCTAAAAAGGAATGGATCCTAACGAAAGCCACCATCACCACCAACAACAACAGCTC 82
Query 58 catca---ccaccaccagcaacagcaacagcagcagcaccagcaacGACTCAGTTCTCCT 114
||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 83 CATCACCTCCACCAACAGCAACAGCAACAGCAGCAG---CAGCAACGACTCACTTCTCCT 139
Query 115 TACTTCCACCACCAACTACAG---CATCACCACCACCCAACCACCGTCGCAACCACCGCT 171
||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 140 TACTTCCACCACCAACTACAGCACCATCACCACCTTCCAACCACCGTAGCAACCACCGCT 199
Query 172 TCTACCGGAAACGCCGTTCCATCTTCCAACAATGGGCTTTTCCCTCCTCAGCCTCAGCCG 231
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 200 TCTACCGGAAACGCCGTTCCATCTTCCAACAATGGGCTTTTCCCTCCGCAGCCTCAGCCA 259
Query 232 CAACACCAGCCTAATGATGGGTCATCGTCACTCGCGGTGTACCCTCATTCAGTTCCATCC 291
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 260 CAGCACCAGCCTAATGATGGGTCATCTTCTCTCGCGGTGTACCCTCATTCAGTTCCGTCC 319
Query 292 TCGGCTGTGACGGCGCCGATGGAGCCGTTAAAGAGGAAGAGAGGTAGACCAAGAAAGTAT 351
||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct 320 TCGGCTGTGACGGCGCCGATGGAGCCGGTAAAGAGGAAGAGGGGTCGACCAAGAAAGTAT 379
Query 352 GTGACGCCGGAGCAAGCCCTAGCGGCTAAGAAAATGGCGTCTTCTGCGAGTAGTTCATCT 411
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 380 GTGACGCCGGAACAAGCCCTAGCGGCTAAGAAATTGGCGTCTTCTGCGAGTAGTTCGTCT 439
Query 412 GCTAAACAGAGGAGAGAGCTTGCTGCTGTTACCGGAGGTACGGTATCGACTAATTCCGGA 471
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 440 GCTAAACAGAGGCGAGAGCTTGCTGCTGTTACCGGTGGTACGGTATCGACTAATTCCGGG 499
Query 472 TCATCGAAGAAATCTCAGCTTGGTTCTGTCGGGAAAACTGGACAATGCTTTACTCCGCAT 531
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 500 TCATCCAAGAAATCTCAGCTTGGTTCTGTCGGGAAAACTGGACAATGTTTTACTCCGCAT 559
Query 532 ATCGTTAATATAGCTCCTGGTGAGGATGTGGTCCAGAAGATTATGATTTTCGCAAACCAA 591
|| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 560 ATTGTTAATATAGCTCCTGGCGAGGATGTGGTCCAGAAAATTATGATGTTCGCAAACCAA 619
Query 592 AGCAAGCATGAACTATGCGTTCTTTCTGCATCAGGCACTATCTCTAATGCATCCTTGCGC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AGCAAGCATGAACTATGCGTTCTTTCTGCATCAGGCACTATCTCTAATGCATCCTTGCGC 679
Query 652 CAACCAGCTACAGCAGGAGGCAACTTACCACATGAGGGTCAGTACGAGATTCTCTCACTA 711
||||| ||| || ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 680 CAACCGGCTCCATCAGGAGGCAACTTACCATATGAGGGTCAATACGAGATTCTCTCACTA 739
Query 712 TCTGGATCATATATCCGAACTGAACAAGGTGGTAAAACCGGCGGCCTTAGCGCTTCTTTA 771
|||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 740 TCTGGATCCTATATCCGAACTGAACAAGGTGGTAAATCCGGCGGCCTTAGCGTTTCTTTA 799
Query 772 TCTGCTTCAGATGGTCAGATCATCGGTGGAGCGATTGGGACCCACCTCACAGCTGCTGGC 831
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 800 TCTGCTTCAGATGGTCAGATCATCGGTGGAGCGATTGGTAGCCATCTCACAGCTGCTGGC 859
Query 832 CCGGTTCAGGTGATTCTTGGTACGTTTCAGCTTGATAGAAAGAAGGATGCCGCCGGGAGT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CCGGTTCAGGTGATTCTTGGTACGTTTCAGCTTGATAGAAAGAAGGATGCCGCCGGGAGT 919
Query 892 GGTGGGAAAGGGGATGCTTCAAACAGCGGAAGTCGGTTAACTTCTCCTGCAAGCACTGGA 951
|||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct 920 GGTGGGAAAGGGGATGCTTCAAACAGTGGAAGTCGGTTAACTTCTCCTGTAAGCTCTGGA 979
Query 952 CAGTTGCTTGGCATAGGTTTCCCTCCTGGTATGGAGTCTACGGGAAGAAATCCAGTGAGG 1011
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 980 CAGTTGCTTGGCATGGGTTTCCCTCCTGGTATGGAATCTACGGGAAGAAATCCAATGAGG 1039
Query 1012 GGAAACGATGAGCAGCA-G--CATCATCATCATCAACCCGGTTTAGGTGGACCTCATCAT 1068
|||||||| ||||| || | ||||||||||||||| ||||||| |||||||||||||||
Sbjct 1040 GGAAACGACGAGCAACATGATCATCATCATCATCAAGCCGGTTTGGGTGGACCTCATCAT 1099
Query 1069 TTTATGATGCAAGCACCGCAGGGGATGCACATGACACATTCCAGGCCAGCTGAATGGCGC 1128
|| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1100 TTCATGATGCAAGCGCCGCAGGGGATACACATGACACATTCCAGGCCATCTGAATGGCGC 1159
Query 1129 GGAGGAGGCAACAGCGGTCTTGATGTCAGAGGCGGTGGCGGGTATGATTTGTCAGGTCGG 1188
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1160 GGAGGAGGCAACAGCGGTCATGATGGCAGAGGCGGTGGCGGGTATGATTTGTCAGGAAGG 1219
Query 1189 ATAGGACATGAGTCGTCGGAGAATGGAGATTACGAGCAGCAAATACCGGATTAGAAGAGC 1248
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1220 ATAGGACATGAGTCGTCGGAGAATGGAGATTACGAGCAGCAAATACCGGATTAGCAGAGC 1279
Query 1249 TTCGACGAGAAGTGTGTAGAGTTTAGATCCCAAGTAGA-AA-CAGAAG-CTGAGCAAAGA 1305
||| | |||||||||||||||||||||||||||||||| || |||||| | |||||||||
Sbjct 1280 TTCCAGGAGAAGTGTGTAGAGTTTAGATCCCAAGTAGAGAAACAGAAGGC-GAGCAAAGA 1338
Query 1306 ATCTGAACTGAGAGAGGACTTATTAGACAGAGGCTCGTCTGAAGGGTCTTCA-TCATAGA 1364
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 1339 ATCTGAACTGAGAGAGGACTTATTAGACAGAGACTCGTCTGAAGGGTCTTTAATCATAGA 1398
Query 1365 AAGAAGTTGCTGAGCGAT-GCTTTTGTTCTTCTTCTTGATACTGTGTATTATATTAACTC 1423
|||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1399 AAGAAGTTGCTGAGTGATTGCTTTTGTTCTTCTTCTTGGTACGGTGTATTATATTAACTC 1458
Query 1424 -A-A-CCtttttttt---ctttcaataacgattctgcttcactttcaatttcattccttt 1477
| | |||||||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1459 CACAACCTTTTTTTTATACTTTCAGTAACGATTCTCCTTCACTTTCAATTTCATTCCTTT 1518
Query 1478 tttt-atactctttttcttttcctatatttacatttttttggttgttttttttttctttc 1536
|||| ||||||||||||||||| |||| | | ||||||||||| ||| |||||
Sbjct 1519 TTTTTATACTCTTTTTCTTTTCTTATAAT-AT-TTTTTTTGGTT-TTT-------CTTTC 1568
Query 1537 ttttGTTGTTACTAAAAATGGAAATGCTCTTTTA-TGAAATATATACACTTCGTTTGTTC 1595
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1569 GTTTGTT---ACTAAAAAAGGAAATGCTCTTTTTGTGAAATATATACACTTCGTTTGTTC 1625
Query 1596 GGTTTCTACTTATGTTAATTATTCATAACCTATCTTA 1632
|||||||||||||||||||||||||||||||||||||
Sbjct 1626 GGTTTCTACTTATGTTAATTATTCATAACCTATCTTA 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5