BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477717 Length=1632 Score E Sequences producing significant alignments: (Bits) Value AT3G04590.2 | Symbols: | AT hook motif DNA-binding family prot... 2385 0.0 > AT3G04590.2 | Symbols: | AT hook motif DNA-binding family protein | chr3:1238853-1241640 REVERSE LENGTH=1665 Length=1665 Score = 2385 bits (1291), Expect = 0.0 Identities = 1542/1657 (93%), Gaps = 42/1657 (3%) Strand=Plus/Plus Query 1 TCTCTCTAAAAAGGAATGGAACCTAACGAAagccaccatcacca-c--caacaacagctt 57 |||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct 23 TCTCTCTAAAAAGGAATGGATCCTAACGAAAGCCACCATCACCACCAACAACAACAGCTC 82 Query 58 catca---ccaccaccagcaacagcaacagcagcagcaccagcaacGACTCAGTTCTCCT 114 ||||| |||||| ||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 83 CATCACCTCCACCAACAGCAACAGCAACAGCAGCAG---CAGCAACGACTCACTTCTCCT 139 Query 115 TACTTCCACCACCAACTACAG---CATCACCACCACCCAACCACCGTCGCAACCACCGCT 171 ||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| Sbjct 140 TACTTCCACCACCAACTACAGCACCATCACCACCTTCCAACCACCGTAGCAACCACCGCT 199 Query 172 TCTACCGGAAACGCCGTTCCATCTTCCAACAATGGGCTTTTCCCTCCTCAGCCTCAGCCG 231 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 200 TCTACCGGAAACGCCGTTCCATCTTCCAACAATGGGCTTTTCCCTCCGCAGCCTCAGCCA 259 Query 232 CAACACCAGCCTAATGATGGGTCATCGTCACTCGCGGTGTACCCTCATTCAGTTCCATCC 291 || ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 260 CAGCACCAGCCTAATGATGGGTCATCTTCTCTCGCGGTGTACCCTCATTCAGTTCCGTCC 319 Query 292 TCGGCTGTGACGGCGCCGATGGAGCCGTTAAAGAGGAAGAGAGGTAGACCAAGAAAGTAT 351 ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| Sbjct 320 TCGGCTGTGACGGCGCCGATGGAGCCGGTAAAGAGGAAGAGGGGTCGACCAAGAAAGTAT 379 Query 352 GTGACGCCGGAGCAAGCCCTAGCGGCTAAGAAAATGGCGTCTTCTGCGAGTAGTTCATCT 411 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 380 GTGACGCCGGAACAAGCCCTAGCGGCTAAGAAATTGGCGTCTTCTGCGAGTAGTTCGTCT 439 Query 412 GCTAAACAGAGGAGAGAGCTTGCTGCTGTTACCGGAGGTACGGTATCGACTAATTCCGGA 471 |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 440 GCTAAACAGAGGCGAGAGCTTGCTGCTGTTACCGGTGGTACGGTATCGACTAATTCCGGG 499 Query 472 TCATCGAAGAAATCTCAGCTTGGTTCTGTCGGGAAAACTGGACAATGCTTTACTCCGCAT 531 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 500 TCATCCAAGAAATCTCAGCTTGGTTCTGTCGGGAAAACTGGACAATGTTTTACTCCGCAT 559 Query 532 ATCGTTAATATAGCTCCTGGTGAGGATGTGGTCCAGAAGATTATGATTTTCGCAAACCAA 591 || ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 560 ATTGTTAATATAGCTCCTGGCGAGGATGTGGTCCAGAAAATTATGATGTTCGCAAACCAA 619 Query 592 AGCAAGCATGAACTATGCGTTCTTTCTGCATCAGGCACTATCTCTAATGCATCCTTGCGC 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 AGCAAGCATGAACTATGCGTTCTTTCTGCATCAGGCACTATCTCTAATGCATCCTTGCGC 679 Query 652 CAACCAGCTACAGCAGGAGGCAACTTACCACATGAGGGTCAGTACGAGATTCTCTCACTA 711 ||||| ||| || ||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 680 CAACCGGCTCCATCAGGAGGCAACTTACCATATGAGGGTCAATACGAGATTCTCTCACTA 739 Query 712 TCTGGATCATATATCCGAACTGAACAAGGTGGTAAAACCGGCGGCCTTAGCGCTTCTTTA 771 |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 740 TCTGGATCCTATATCCGAACTGAACAAGGTGGTAAATCCGGCGGCCTTAGCGTTTCTTTA 799 Query 772 TCTGCTTCAGATGGTCAGATCATCGGTGGAGCGATTGGGACCCACCTCACAGCTGCTGGC 831 |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| Sbjct 800 TCTGCTTCAGATGGTCAGATCATCGGTGGAGCGATTGGTAGCCATCTCACAGCTGCTGGC 859 Query 832 CCGGTTCAGGTGATTCTTGGTACGTTTCAGCTTGATAGAAAGAAGGATGCCGCCGGGAGT 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 860 CCGGTTCAGGTGATTCTTGGTACGTTTCAGCTTGATAGAAAGAAGGATGCCGCCGGGAGT 919 Query 892 GGTGGGAAAGGGGATGCTTCAAACAGCGGAAGTCGGTTAACTTCTCCTGCAAGCACTGGA 951 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| Sbjct 920 GGTGGGAAAGGGGATGCTTCAAACAGTGGAAGTCGGTTAACTTCTCCTGTAAGCTCTGGA 979 Query 952 CAGTTGCTTGGCATAGGTTTCCCTCCTGGTATGGAGTCTACGGGAAGAAATCCAGTGAGG 1011 |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 980 CAGTTGCTTGGCATGGGTTTCCCTCCTGGTATGGAATCTACGGGAAGAAATCCAATGAGG 1039 Query 1012 GGAAACGATGAGCAGCA-G--CATCATCATCATCAACCCGGTTTAGGTGGACCTCATCAT 1068 |||||||| ||||| || | ||||||||||||||| ||||||| ||||||||||||||| Sbjct 1040 GGAAACGACGAGCAACATGATCATCATCATCATCAAGCCGGTTTGGGTGGACCTCATCAT 1099 Query 1069 TTTATGATGCAAGCACCGCAGGGGATGCACATGACACATTCCAGGCCAGCTGAATGGCGC 1128 || ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1100 TTCATGATGCAAGCGCCGCAGGGGATACACATGACACATTCCAGGCCATCTGAATGGCGC 1159 Query 1129 GGAGGAGGCAACAGCGGTCTTGATGTCAGAGGCGGTGGCGGGTATGATTTGTCAGGTCGG 1188 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || Sbjct 1160 GGAGGAGGCAACAGCGGTCATGATGGCAGAGGCGGTGGCGGGTATGATTTGTCAGGAAGG 1219 Query 1189 ATAGGACATGAGTCGTCGGAGAATGGAGATTACGAGCAGCAAATACCGGATTAGAAGAGC 1248 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1220 ATAGGACATGAGTCGTCGGAGAATGGAGATTACGAGCAGCAAATACCGGATTAGCAGAGC 1279 Query 1249 TTCGACGAGAAGTGTGTAGAGTTTAGATCCCAAGTAGA-AA-CAGAAG-CTGAGCAAAGA 1305 ||| | |||||||||||||||||||||||||||||||| || |||||| | ||||||||| Sbjct 1280 TTCCAGGAGAAGTGTGTAGAGTTTAGATCCCAAGTAGAGAAACAGAAGGC-GAGCAAAGA 1338 Query 1306 ATCTGAACTGAGAGAGGACTTATTAGACAGAGGCTCGTCTGAAGGGTCTTCA-TCATAGA 1364 |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| Sbjct 1339 ATCTGAACTGAGAGAGGACTTATTAGACAGAGACTCGTCTGAAGGGTCTTTAATCATAGA 1398 Query 1365 AAGAAGTTGCTGAGCGAT-GCTTTTGTTCTTCTTCTTGATACTGTGTATTATATTAACTC 1423 |||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1399 AAGAAGTTGCTGAGTGATTGCTTTTGTTCTTCTTCTTGGTACGGTGTATTATATTAACTC 1458 Query 1424 -A-A-CCtttttttt---ctttcaataacgattctgcttcactttcaatttcattccttt 1477 | | |||||||||| |||||| |||||||||| |||||||||||||||||||||||| Sbjct 1459 CACAACCTTTTTTTTATACTTTCAGTAACGATTCTCCTTCACTTTCAATTTCATTCCTTT 1518 Query 1478 tttt-atactctttttcttttcctatatttacatttttttggttgttttttttttctttc 1536 |||| ||||||||||||||||| |||| | | ||||||||||| ||| ||||| Sbjct 1519 TTTTTATACTCTTTTTCTTTTCTTATAAT-AT-TTTTTTTGGTT-TTT-------CTTTC 1568 Query 1537 ttttGTTGTTACTAAAAATGGAAATGCTCTTTTA-TGAAATATATACACTTCGTTTGTTC 1595 |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1569 GTTTGTT---ACTAAAAAAGGAAATGCTCTTTTTGTGAAATATATACACTTCGTTTGTTC 1625 Query 1596 GGTTTCTACTTATGTTAATTATTCATAACCTATCTTA 1632 ||||||||||||||||||||||||||||||||||||| Sbjct 1626 GGTTTCTACTTATGTTAATTATTCATAACCTATCTTA 1662 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80622075270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5