BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477718
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04600.1 | Symbols: | Nucleotidylyl transferase superfamily... 2073 0.0
> AT3G04600.1 | Symbols: | Nucleotidylyl transferase superfamily
protein | chr3:1242973-1246211 FORWARD LENGTH=1558
Length=1558
Score = 2073 bits (1122), Expect = 0.0
Identities = 1208/1250 (97%), Gaps = 3/1250 (0%)
Strand=Plus/Plus
Query 1 TTTTTGTTTTCCCGTCGCGATGGAGGTGGATAAGAAGGATGAGAGAGAGGCTGAATCTTC 60
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 79 TTTTTGTTTT-CCGTCGCGATGGAGGTGGATAAGAAGGACGAGAGAGAGGCTGAATCTTC 137
Query 61 GGAGCAAGTAGTGAATCCATGGGAAGTGTCCGCCAAAGACGGCGGGAAGATCGATTACGA 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GGAGCAAGTGGTGAATCCATGGGAAGTGTCCGCCAAAGACGGCGGGAAGATCGATTACGA 197
Query 121 CAAGCTTATTGACAAATTTGGCTGCCAAAGGCTTGATGAGTCACTGATTGATCGTGTTCA 180
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 198 CAAGCTTATTGACAAATTTGGATGTCAAAGGCTTGACGAGTCACTGATTGATCGTGTTCA 257
Query 181 GAGACTGACTTCTCGTCAACCACACGTATTCCTCCGTCGTGGTGTCTTCTTCGCCCACCG 240
||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 258 GAGACTGACTTCTCGTCAACCACACGTGTTCCTCCGCCGTAGTGTCTTCTTCGCCCACCG 317
Query 241 GGATTTCAATGAGATTTTGGATGCCTATGAGAAAGGAGACAAGTTCTATCTCTACACTGG 300
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 318 GGATTTCAATGAGATTTTGGACGCTTATGAGAGAGGAGACAAGTTCTATCTCTACACTGG 377
Query 301 AAGAGGACCTTCATCAGAAGCTTTGCATTTGGGGCATTTGATTCCTTTCATGTTTACCAA 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 378 AAGAGGACCTTCATCAGAAGCATTGCATTTGGGGCATTTGATTCCTTTCATGTTTACCAA 437
Query 361 ATACTTGCAAGAAGCTTTCAAGGTTCCCCTTGTTATACAGCTCACGGATGATGAAAAATG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 438 ATACTTGCAAGAAGCTTTCAAGGTTCCCCTTGTTATACAGCTCACGGATGATGAAAAAAG 497
Query 421 CATGTGGAAGAACTTATCGGTGGAGGAAAGTCAAAGACTTGCCAGAGAAAATGCGAAAGA 480
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TATATGGAAGAACTTATCGGTGGAGGAAAGTCAAAGACTTGCCAGAGAAAATGCGAAAGA 557
Query 481 TATAATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGT 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TATTATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGT 617
Query 541 TGGCGGTGCTTTCTATAAAAATATGGTGAGGGTTGCCAAGTGCGTTACGCTTAATAAGGC 600
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 618 TGGCGGTGCTTTCTATAAAAATATGGTGAAGGTTGGCAAGTGCGTTACACTTAATAAGGC 677
Query 601 TATGGGAATCTTTGGCTTTTCCGGTGAAGATCATATCGGGAAACTCAGTTTCCCTCCTGT 660
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 678 TATGGGAATCTTTGGCTTTTCCGGTGAAGATCCTATCGCGAAACTCAGTTTCCCTCCTGT 737
Query 661 GCAGGCAGTTCCATCTTTTCCTAGCTCATTCCCACATTTGTTCCCTGGAAAGGACAATCT 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 738 GCAGGCAGTTCCATCTTTTCCTAGCTCATTCCCACATTTGTTCCCTGGCAAGGACAATCT 797
Query 721 CCGCTGCTTGATTCCTTGTGCTATTGACCAGGATCCTTATTTTAGAATGACTCGTGATGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CCGCTGCTTGATTCCTTGTGCTATTGACCAGGATCCTTATTTTAGAATGACTCGTGATGT 857
Query 781 TGCACCTCGGTTAGGCTATAGCAAGCCCGCCCTGATTGAGTCATCATTTTTTCCTGC-TC 839
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 858 CGCACCCCGGTTAGGCTATAGCAAGCCCGCCCTGATTGAGTCAACATTTTTTCCTGCGT- 916
Query 840 TGCAGGGAGAGAATGGAAAAATGTCTGCTAGTGATCCAAATTCTGCTATCTATGTGACTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TGCAGGGAGAGAATGGAAAAATGTCTGCTAGTGATCCAAATTCTGCTATCTATGTGACTG 976
Query 900 ATACCGCGAAGGACATTAAGAACAAGATAAACAGATATGCGTTTAGTGGTGGGCAAGACT 959
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 977 ATTCCGCAAAGGACATTAAAAACAAGATAAACAGATATGCGTTTAGTGGTGGGCAAGACT 1036
Query 960 CCGTCGAGAAGCACAGAGAACTTGGAGCAAATCTGGAGGTAGACATACCCGTCAAGTATC 1019
|| | ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1037 CCATTGAGAAGCACCGAGAACTTGGAGCAAATCTCGAGGTTGACATACCCGTCAAGTATC 1096
Query 1020 TGAGTTTCTTCCTGGAAGATGATTCTGAACTAGAACACATTAAAAAGGAATATGGAGAAG 1079
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TGAGTTTCTTCCTCGAAGACGATTCTGAACTAGAACACATTAAAAAGGAATATGGAGAAG 1156
Query 1080 GACGAATGCTAACAGGAGAAGTAAAGAAGAGACTTACGGAAGTGTTGACAGAAATGGTGG 1139
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1157 GAAGAATGCTAACAGGAGAAGTAAAGAAGAGACTTACGGAAGTGTTGACAGAAATTGTGG 1216
Query 1140 AGAGACACCGCAGGGCTCGAGCTGCTGTTACTGATGAGATGGTTGATGCGTTCATGGCCG 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1217 AGAGACACCGCAGGGCTCGAGCTGCTGTTACTGATGAGATGGTTGATGCGTTCATGGCGG 1276
Query 1200 TGAGACCTCTCCCAAGCATGTTCGAATAGAAGAAGTCAGAAACCCTTTTT 1249
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1277 TGAGACCTCTCCCAAGCATGTTCGAATAGAAAAAGTCAGAAACCCTTTTT 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61395266535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5