BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477722
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04620.1 | Symbols: | Alba DNA/RNA-binding protein | chr3:1... 1184 0.0
> AT3G04620.1 | Symbols: | Alba DNA/RNA-binding protein | chr3:1255526-1256869
REVERSE LENGTH=759
Length=759
Score = 1184 bits (641), Expect = 0.0
Identities = 719/756 (95%), Gaps = 7/756 (1%)
Strand=Plus/Plus
Query 1 CTAATTCCCCGAGAGTAACCAACAA---AAAGCGATCAAAGAACTTTTCCCGTTagagag 57
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1 CTAATTCCCCGAGAGTAACCAACAACCCAAAGCGATCAAAGAACTTTTCCCGCTAGAGAG 60
Query 58 agaga-cgaagaagaagaagaagaaaagttacgcagagagactgaaagaagagtgatcga 116
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGAGAGAAGAAGAAGAAGAAGAAAAGTTACGCAGAGAGACTGAAAGAAGAGTGATCGA 120
Query 117 tcggagaaagaTGGCGATGGAAGTAGCAACACCGGCTCCGGCACCAATCCCATCGGAGAG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGAGAAAGATGGCGATGGAAGTAGCAACACCGGCTCCGGCACCAATCCCATCGGAGAG 180
Query 177 GAACATCGTTCTCGCGCCTGCGACAACAACAACCACCGCCACTGTTGAGACTCACAAGAA 236
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GAACATCGTTCTCGCGCCTGCAACAACAACAACAACCGCCACTGTTGAGACTCACAAGAA 240
Query 237 GAACAGGATCCAAGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAACCTCGCCAA 296
||||||||||||||| |||||||||||||| |||||||||||||| || || ||||||||
Sbjct 241 GAACAGGATCCAAGTTTCCAACACCAAGAAGCCATTGTTCTTCTACGTTAATCTCGCCAA 300
Query 297 GAGGTACATTCAGCAACACAACGAGGTCGAGCTTTCTGCACTTGGAATGGCAATCACTAC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 GAGGTACATTCAGCAACACAACGAGGTCGAGCTTTCTGCACTTGGAATGGCAATCACAAC 360
Query 357 TGTGGTAACAATCTCTGAGATCTTGAAGAACAATGGACTTGCAACAGAGAAGAAGGTGTT 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TGTGGTAACAATCTCTGAGATCTTGAAGAACAATGGACTTGCAACAGAGAAGAAGGTGCT 420
Query 417 AACATCTACTGTGGGAATGAAAGATGAGACCAAAGGCAGGATGGTTCAGAAGGCAAAGAT 476
|||||| ||||||||||||||||||||||| ||||| | |||||| ||||||||||||||
Sbjct 421 AACATCGACTGTGGGAATGAAAGATGAGACAAAAGGGAAGATGGTCCAGAAGGCAAAGAT 480
Query 477 TGAGATAGTGTTGGGCAAGTCAGACAAGTTTGACTCTTTGGTGCCACCAGTTACTAACGG 536
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 481 TGAGATAGTGTTGGGCAAGTCAGACAAGTTTGACTCTTTGGTGCCACCTGTGACCAACGG 540
Query 537 CAAGACCCCGGAGGAGGAAGCTAGTGCAGAGACGGAGGCTTCTGTGGAAGCACAAGAAGA 596
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 541 CAAGACTCCGGAGGAGGAAGCCAGTGCAGAGACGGAAGCTTCCGTGGAAGCACAAGAAGA 600
Query 597 CGTTGCCGCAGCCACCGAGGTCTAGGTTGGAGCTGGTTGAGAGATATACTACAGAAGAAG 656
|||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||| |
Sbjct 601 AGTTGCCGCTGCCACCGAGGTCTAGGTTGGAGCCGGTTGAGAGATTTACTGCAGAAG--G 658
Query 657 GATTGATTTCTCTTTTACTATGTTTTGTTGGTTTTTGTTTCGTTTGTGACATATCGAACA 716
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 -ACTGATTTCTCTTTTACTATGTTTTGTTGGCTTTTGTTTCGTTTGTGACATATCGAACA 717
Query 717 TAATACTCTAGATATGATAGTAATTGTTTGTTTAGC 752
||||||||||||||||||||||||||||||||||||
Sbjct 718 TAATACTCTAGATATGATAGTAATTGTTTGTTTAGC 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5