BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477724
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04630.1 | Symbols: WDL1 | WVD2-like 1 | chr3:1258546-126087... 1753 0.0
> AT3G04630.1 | Symbols: WDL1 | WVD2-like 1 | chr3:1258546-1260871
FORWARD LENGTH=1305
Length=1305
Score = 1753 bits (949), Expect = 0.0
Identities = 1160/1255 (92%), Gaps = 42/1255 (3%)
Strand=Plus/Plus
Query 1 CCATTCCAAAATAGTCACCGCCC---------aaaaaaaaaaaaaaTCCtttttttCTCT 51
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CCATTCCAAAATAGTCACCGCCCAAAAAAAAAAAAAAAAAAAAAAATCCTTTTTTTCTCT 60
Query 52 TCTTgagagagagaggagagagaaagagagagggagaCAAGTTTGTTCTGGATAAAAAGA 111
|||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTT--------GA-GAGAGAGAAAGAGAGAGGGAGACAAGTTTGTTCTGGATAAAAAGA 111
Query 112 CAATTCATTTCTATTTT--TTGTCTGCAAAATTCTCACGGGCCATCGGAGAGAGGAGACA 169
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CAATTCATTTCTATTTTAATTGTCTGCAAAATTCTCACGGGCCATCGGAGAGAGGAGACA 171
Query 170 GAGGTGGTGGTGCACAAGAATCCTTCCTCC--TATCCTACAAAGACTTGTGGAATGGGAA 227
||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 172 GAGGTGGTGCTGCACAAGAATCCTTCCTCCTATATCCTAC-AAGACTT-TGGAATGGGAA 229
Query 228 GAGAAGTTGTTGAGGTGCTTATGGACCGAAACGCTGACGTTTCAAGCGGTAGAGTTCACG 287
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 230 GAGAAGTTGTTGAGGTGCTTATGGACCGAAACGCCGACGTTTCAAGCGCTAGAGTTCATG 289
Query 288 TTGCTCCTAAGATAGCTGCAGAGGAGACTGATGAGGAATTTGAAGTCAAGGAATGCACAG 347
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 290 TTGCTCCTAAGATAGCTGCAGAGGAGACTGATGAGGAATTTGAAGTCAAAGAATGCACAG 349
Query 348 AAGAGAAGTCTCTTTCTGAGAATGCACCAAATGTTGGATCTGCTGAGAGAATTGGGGCTC 407
| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 350 AGGAGAAGTCTCTTTCTGAGAATGCACCAAATGTTGGATCTGCTGAGAGAGTTGGAGCTC 409
Query 408 ACAAATCGCCTAAAACTCGTAAAGGAAATGCTAAAGTTTCAAAGCAGCAGGATGCTCCTC 467
| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 410 AGAAATCACCTAAAACCCGTAATGGAAATGCTAAAGTTTCAAAGCAGCAGGATGCTCCTC 469
Query 468 TTCTCCCGGTGAGGAAGCCATTGCAACCCGAGAACAAGAAGCATATCGATGACGATGATA 527
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 470 TTCTCGCGGTGAGGAAGCCATTGCAACCCGAGAACAAGAAGCATATTGATGACGAAGATA 529
Query 528 ATTGCTCCATTGCTTCTTCCGTGGCAACTTCCGTGAGGATGGGTAAGTCTGGATTGACTT 587
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 530 ATTGCTCCATTGCTTCTTCCGTTGCAACTTCCATGAGGATGGGTAAGTCTGGATTGACTT 589
Query 588 ATGGAAGTGCTCCAACGTTTAGGAGTGCTCAACGTGCTGAGAAACGCAAGGAGTATTACC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATGGAAGTGCTCCAACGTTTAGGAGTGCTCAACGTGCTGAGAAACGCAAGGAGTATTACC 649
Query 648 AAAAGCTCGAGGAGAAAAACCAAGCGCTTGAAGCCGAAAGGAACGAGCTTGAACAGAGGC 707
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 650 AAAAGCTCGAGGAGAAAAACCAAGCGCTTGAAGCTGAGAGGAACGAGCTTGAACAGAGGC 709
Query 708 AAAAGGAAGAACAAGAAGCAGCCTTGAAACAACTTAGAAAGAATCTCAAGTTCAAGGCTA 767
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 710 AAAAGGATGAACAAGAAGCAGCCTTGAAGCAACTTAGAAAGAATCTCAAGTTCAAGGCTA 769
Query 768 AACCCGTCCCTAACTTCTACTACGAGGCACCTCCTGCAAAAGCTGAGCTCAAGAAGCTTC 827
|||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 770 AACCCGTCCCCAACTTCTACTACGAGGCACCTCCTGCGAAACCTGAGCTCAAGAAGCTTC 829
Query 828 CTTTGACGCGTCCCAAGTCGCCAAAACTCATCCTTTCTCGGAGAAAAAGTTTCAGCGACG 887
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 830 CTTTGACACGTCCCAAGTCGCCAAAACTGATCCTTTCTCGGAGAAAAAGCTTCAGCGACG 889
Query 888 CAGTCAGCTCGTCTTCTCGTGAAGAGGTTCTGAAGACAGTCTCTAACCGGAACCGACACA 947
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 890 CAGTCAGCTCGTCTTCCCGTGAAGAGATTCTGAAGACAGTCTCTAACCGGAACCGACACA 949
Query 948 GCACTGGAACAGTTCAGAACAAAGA--A-GATCAGAAGAACAAGAACACCAATTCTGCTC 1004
||||||||||||||||||||||||| | ||||| | |||||||||||||||| |||| |
Sbjct 950 GCACTGGAACAGTTCAGAACAAAGACGATGATCACAGGAACAAGAACACCAATGCTGCGC 1009
Query 1005 ACGACAGCCCTCGTGTCAGATCTGGTAAAGCTAAAGCCGCATTGAAACCAGTGACCGAGT 1064
|||||||||||||||||||||| || |||| |||| ||| |||||||||||||| |||||
Sbjct 1010 ACGACAGCCCTCGTGTCAGATCAGGCAAAGGTAAATCCGGATTGAAACCAGTGAACGAGT 1069
Query 1065 GCTCAGAAGAAGCTTCTGAGGCTTGAAAAGATGATGAACGATGCTTTGTTGGTCTAACTT 1124
|||||||||||||| || || ||||||||||| | | || |||||||||||||
Sbjct 1070 CCTCAGAAGAAGCTT--GAAATTTCAAAAGATGATG--C--T--TT-GTTGGTCTAACTT 1120
Query 1125 GATCTCACCGGAGAAAATTTAAAATCAAAACAAAGACTCTTTGTTTTTCGGTTATTTTCG 1184
||||| ||||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 1121 GATCTTGCCGGAGAAAATGTAAAATCAAA-----GACTCTTTGTTTTTCGGTTATTTCCG 1175
Query 1185 GTATATGTTTGGTTCACAATGTAATTGTCTTTCT-CGGTTTTAAGTTTTAACATG 1238
||||| ||||||||||| |||||| ||||||| | || |||||||||||||||||
Sbjct 1176 GTATACGTTTGGTTCACTATGTAACTGTCTTTTTTCGATTTTAAGTTTTAACATG 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5