BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477726
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04640.1 | Symbols: | glycine-rich protein | chr3:1260906-1... 769 0.0
> AT3G04640.1 | Symbols: | glycine-rich protein | chr3:1260906-1261683
REVERSE LENGTH=778
Length=778
Score = 769 bits (416), Expect = 0.0
Identities = 600/683 (88%), Gaps = 36/683 (5%)
Strand=Plus/Plus
Query 1 ATATATTAAAATATGCGTTCAGATATTCAAATTAGAATAATTTTATTTAGTCACGCGGTT 60
||||||||||||| |||||||||||||||||||||||| | | || |||||||||||||
Sbjct 20 ATATATTAAAATACGCGTTCAGATATTCAAATTAGAAT-A-GTCATATAGTCACGCGGTT 77
Query 61 ATAAACAATTCGGTGTATAAATTTTAAGTCACACAGAAACAGAAATAAACGCAAACG--A 118
||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||| |
Sbjct 78 ATAAACAATTCGGTGTATAAATTGTAAGTCACACAGAAAAAGAAAGAAACG-AAACGAAA 136
Query 119 --AATTATGGATTTGAAGAAAGCAACTTCGCTTTTT-TACTTTCTTCTCTGTCTCCA--- 172
|||||||||||||||||||||| ||| | ||||| | | ||||||||||||||||
Sbjct 137 CGAATTATGGATTTGAAGAAAGCATCTTTG-TTTTTATTCCTTCTTCTCTGTCTCCACCT 195
Query 173 -C--CTGCAACACCACTTTGCTCACGCGATCTCGCGATCTT---C-----TA-CCTCCGT 220
| |||||||||||||||||||||||| |||||||||||| | || ||| |||
Sbjct 196 GCAACTGCAACACCACTTTGCTCACGCGGTCTCGCGATCTTCAACAAGTTTAGCCTTCGT 255
Query 221 TGATCCAAACCATGACGATCTTCCGGTTC-AGCCTGTCGAATTGAAGCCGGACGGTGACT 279
||||||||||||||| ||||| ||| ||| || || ||||||||||| |||||||||
Sbjct 256 TGATCCAAACCATGATGATCTCCCGTTTCAAG-AAGTAGAATTGAAGCCAGACGGTGACG 314
Query 280 TAATCGCCGCCAATTTAACGGAATTAGCAGTC---GTTAAGAAaggaggcggaggtggag 336
|||||| ||||||||| || ||||| ||||| ||||||||||| |||||||| ||||
Sbjct 315 TAATCGAAGCCAATTTACCGAAATTAACAGTCGTTGTTAAGAAAGGCGGCGGAGGAGGAG 374
Query 337 gcagaggcggaggcggcttcggcggaggaggaCGCAGTTTCGGTggaggagggagttcta 396
||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 375 GCAGAGGTGGAGGCGGTTTCGGCGGAGGGGGACGCAGTTTCGGCGGAGGAGGGAGTTCTA 434
Query 397 gcagaggcggaggggggagttctagcagaggcggaggagggagTTCTAGCAGAGGCGGAG 456
|||||||||| || || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 435 GCAGAGGCGGTGGAGGAAGTTCTAGCAGAGGCGGAGGAGGGAGTTCTAGCAGAGGAGGA- 493
Query 457 GGA-TACGTCCGATTCCGATTTATGGCGGTGGTTCGCACCGCGGTGGTCACCGTTCAAGC 515
||| |||||||||||||||||||||||||||| |||||||| ||||||| | |||||||
Sbjct 494 GGATTACGTCCGATTCCGATTTATGGCGGTGGAACGCACCGCAGTGGTCATCATTCAAGC 553
Query 516 GGCGGCCGGGAAACTGCTAGCggttggttaggtttatcgattttagccggttt-ggtttt 574
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||
Sbjct 554 GGCGGCCGGGAAACTGCTAGTGGTTGGTTAGGTCTATCGATTTTAGCCGGTTTAGG-TTT 612
Query 575 ggttttct-aggttttct-tatttgatttaccggtttaggttaAATGTTTGATGCCGGTT 632
|||||| | | | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GGTTTTTTAAAG-CTTCTATATTTGATTTACCGGTTTAGGTTAAATGTTTGATGCCGGTT 671
Query 633 TCGCTTTCCACTGGTTTGCTCTC 655
| |||||||||||||||||||||
Sbjct 672 TTGCTTTCCACTGGTTTGCTCTC 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5