BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477729
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04650.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 2595 0.0
> AT3G04650.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr3:1261984-1264622 FORWARD LENGTH=1773
Length=1773
Score = 2595 bits (1405), Expect = 0.0
Identities = 1570/1648 (95%), Gaps = 17/1648 (1%)
Strand=Plus/Plus
Query 1 AAATTTATCTTAGCCTCCCTCCAAAATTCAACAATGGCCACTTCTTTAATGTCTCTGTCT 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTTATCGGAGCCTCCCTCCAAAATTCAACAATGGCCACTTCTTTAATGTCTCTGTCT 60
Query 61 TCTTCGTTTCTTCAACCTCTGAAACTCAAAACCCTATCAAAACCCAGAAACACTGACTTA 120
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 61 TCTTCATTTCTTCAACCTCTGAAACTCAAAACCCTAGCACAACCCAGAAACACTGACTTA 120
Query 121 TCTACCACCAGAAAGATTATAACAACATGCGATTCACAAAAGAACACTGGGAAGTCTAAC 180
|||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 121 TCTACCACCAGAAAAATCATAACAACATGCGATTCCCAAAACAACACTGGTAAGTCAAAC 180
Query 181 CCAAGCAGCAGAAACCCTAATTTCCAGAAACGGCGAAACTCCTCCAAGTATGGGACTTCT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCCAGCAGCAGAAACCCTAATTTCCAGAAACGGCGAAACTCCTCCAAGTATGGGACTTCT 240
Query 241 AGAAGGTCGATACTCAAGAAATCGTTCTTACAAGAGCAAGTTACCTTCACCGCTCGAATC 300
||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 241 AGAAGGTCGATCCTCAAGAAATCGTTTTTACAAGAGCAAGTTACTTTCACCGCACGGGTC 300
Query 301 TCTGATGACCCCCACGTGGCGATTATCGGTGGAGGAATGGCGGGTTTGGTCTGCGCACTG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TCTGATGACCCCCACGTGGCAATTATCGGTGGAGGAATGGCGGGTTTGGTCTGCGCATTG 360
Query 361 AACCTGGAAGCTCGTGGCGTCCAGTCCACAGTTTTCGATACGGGGATACATGGGTTAGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACCTGGAAGCTCGTGGCGTCCAGTCCACAGTTTTCGATACGGGGATACATGGGTTAGGA 420
Query 421 GGAAGACTTGGAACAAGGATTATTGAACCACAGGGACTTATTTTCGATCACGCTGCTCAA 480
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GGAAGACTTGGAACAAGAATTATTGAACCACAGGGACTAATTTTCGATCACGCTGCTCAA 480
Query 481 TTTTTCACTGCAGATGATTCTCGGTTTATCAAATTGGTTGATGGATGGTTAGAGAAAGGA 540
|| ||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 481 TTCTTCACCGCGGATGATTCTCGGTTTATCAAATTGGTCGATGGGTGGTTAGAGAAAGGA 540
Query 541 CTTGTTCGAGAGTGGAAAGGTGCTGTGGGAGAGCTTGAAGTTGGAGGTAGCTTCTCACAG 600
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 541 CTTGTTCGAGAGTGGAAAGGTGCCGTGGGAGAGCTTGAAATTGGAGGTAGCTTCTCACAG 600
Query 601 TTTCCCTCATCATCACCTCCAAGATACATTGCTGCTAATGGCATGCGATCTCTCGCTGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTCCCTCATCATCACCTCCAAGATACATTGCTGCTAATGGCATGCGATCTCTCGCTGAT 660
Query 661 TCATTGCTATTAGAGAGTCAAATGGTGAATCTGGTAAGGCCTTGTTGGATCAGTAAGTTG 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTTTGCTATTAGAGAGTCAAATGGTGAATCTGGTAAGGCCTTGTTGGATCAGTAAGTTG 720
Query 721 GAGCCACTTAATGGGATGTGGCATTTAAGTGAGAATGGAACACCTCGTGGTCAGTTTGAT 780
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAACCACTTAATGGTATGTGGCATTTAAGTGAGAATGGAACACCTCGTGGTCAGTTTGAT 780
Query 781 GTCATTGTCATTGCTCATAATGGTAAATGTGCAAATCGCTTGCTTTCAGCATCAGGCTTG 840
||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 781 GTCATAGTTATTGCTCATAATGGTAAATGCGCCAATCGCTTGCTTTCAGCATCAGGCTTG 840
Query 841 CCCCTAGTGGCTAAACAGATGAAGAAACTGGATTTGAGTTCAATATGGGCGCTATTAGCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCCCTAGTGGCTAAACAGATGAAGAAACTGGATTTGAGTTCAATATGGGCGCTATTAGCA 900
Query 901 GCTTTTGATGATCCTCTTCCTACAGTGAACTTTGAGGGAGCGTTTGTGAAAGGAGTTGAA 960
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCTTTTGATGATCCTCTTCCCACAGTGAACTTTGAGGGAGCGTTTGTGAAAGGAGTTGAA 960
Query 961 TCACTGTCTTGGATGGGAAATAACTCTGCAAAGCTTGGAAATGGCAGAACTCCAC-A--T 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 961 TCACTGTCTTGGATGGGAAATAACTCTGCAAAGCTTGGAAATGGCAGAACTCCACCACAT 1020
Query 1018 TGCTGGACTTTTTTCAGTACTGCAGCATATGGGAAACATAACAAAGTTCCTCAGGAAAAC 1077
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1021 TGTTGGACTTTTTTCAGTACTGCGGCATATGGGAAACAGAACAAAGTTCCTCAGGAAAAC 1080
Query 1078 ATCCCAACGGTCACGGCAGAGAAAGTTAAAGCCGGGATGCTTCAAGGTGTGGAAATCGCA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATCCCAACGGTCACGGCAGAGAAAGTTAAAGCCGGGATGCTTCAAGGTGTGGAAATCGCA 1140
Query 1138 TTGGGGTTGCCTGAAGGCTCGCTTCCTAAACCCGTTTACACACGTCTCCAGCTATGGGGA 1197
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1141 TTGGGGTTGCCTGAAGGCTCACTTCCTAAACCGGTTTATACACGTCTCCAGCTATGGGGA 1200
Query 1198 GCAGCTTTGCCGAAGAACACTCTTGCAGTTCCATGTATATTTGATCCACAAGGCCGTGCT 1257
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCAGCTTTGCCGAAGAACACTCCTGCAGTTCCATGTATATTTGATCCACAAGGCCGTGCT 1260
Query 1258 GGTATATGCGGTGATTGGCTTCTCGGTTCTAACTTAGAATCTGCAGCTTTAAGCGGTGCA 1317
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1261 GGTATATGCGGTGATTGGCTTCTCGGTTCTAACTTAGAATCTGCAGCTATAAGCGGTGCA 1320
Query 1318 GCCTTAGGAAACCATATTGCAGAATTCCTGCAGAACGGTGAAGCTAACCCGGAAGAGTTT 1377
|||||||||||||||||||| |||||| | ||||||||||||||||| || ||||| |||
Sbjct 1321 GCCTTAGGAAACCATATTGCGGAATTCTTACAGAACGGTGAAGCTAATCCAGAAGAATTT 1380
Query 1378 GCAATCGGTTTACATGATAGGTTAAGTCCTCTTGATGGCCATGATATTGGCCAGTTTCCT 1437
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1381 GCAATCGGTTTACATGATAGGTTAAGTCCTCTTGCTGGCCATGATATTGGTCAGTTTCCT 1440
Query 1438 GGTTTAACTTCAGTGGGAGAAAAGGAAGAAGCGAATGTATATCAAG-TACTGTGAATACA 1496
|||||||| ||||||||||||||||||||||| |||| |||||| | | |||||||||||
Sbjct 1441 GGTTTAACATCAGTGGGAGAAAAGGAAGAAGCTAATGCATATCA-GCTGCTGTGAATACA 1499
Query 1497 CATCAGTCTACTGTTACTTGACGAAAAAGCTAAGAAGTTTGGCAAA----GCTTACAGTG 1552
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1500 --TCAGTCTACTGTTACTTGACGAAAAAGCTAAGAAGTTTTGCAAATTAAGCTTACAGTG 1557
Query 1553 ATATAATCAGTTTCCACTTATAGGCTCACCATTTTCAGACT--T-CTTCATTGGTGACAA 1609
|||| ||||||| ||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 1558 ATAT---CAGTTTCTACTTAGAGGCTCACCATTTTCAGCCTCCTTCTTCATTGGTGACAA 1614
Query 1610 AACCACAGCCGATTTGAGGTGCTATATG 1637
||||||||||||||||||||||||||||
Sbjct 1615 AACCACAGCCGATTTGAGGTGCTATATG 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5