BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477731
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04670.1 | Symbols: WRKY39, ATWRKY39 | WRKY DNA-binding prot... 2638 0.0
> AT3G04670.1 | Symbols: WRKY39, ATWRKY39 | WRKY DNA-binding protein
39 | chr3:1266295-1268287 REVERSE LENGTH=1824
Length=1824
Score = 2638 bits (1428), Expect = 0.0
Identities = 1703/1827 (93%), Gaps = 54/1827 (3%)
Strand=Plus/Plus
Query 1 ACAAAGAAACAAACAAGACAAATCTTTCTCTCTCTTTATTTTATCCTAAAATTTCCTATC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACAAAGAAACAAACAAGACAAATCTTTCTTTCTCTTTATTTTATCCTAAAATTTCCTATC 60
Query 61 TGATTTCTTGCTATTGAGCTTAAA-TT-TTACCTTCCGGGTATTCAAAAAGAtctcattt 118
||||||||| || |||||| |||| || |||||||| |||||||||||||||||||||||
Sbjct 61 TGATTTCTTCCTCTTGAGC-TAAATTTGTTACCTTCTGGGTATTCAAAAAGATCTCATTT 119
Query 119 tttcttctagctctgtattttctcaggaaatttctttcttc-t-tttt--AGACCCTTTG 174
|||||||||||||| | ||| ||||| | ||||||||||| | |||| ||||||||||
Sbjct 120 TTTCTTCTAGCTCT-AAATTT-TCAGGGAGTTTCTTTCTTCTTCTTTTGAAGACCCTTTG 177
Query 175 TCATGAGCTAATTTTTATCTTCCGGGTGATGAAAAAGATCTCATCTTTTAGC-TTAGGAT 233
||||||||||||||||||| || | ||| ||| ||||||||||| ||||||| |||||||
Sbjct 178 TCATGAGCTAATTTTTATCCTCTGTGTGTTGAGAAAGATCTCATTTTTTAGCTTTAGGAT 237
Query 234 TGAGGGAGTTTCGATTTTTTACTTTGCACTTTTCCTTGGAAGTGATTTGGTGGAACACAT 293
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 238 TGAGGGAGTTTCGA-TTTTTACTTAGCACTTTTCCTTGGAAGTGATTTGGTGGAACTCAT 296
Query 294 GGTGATTGGTTTCTTCCTAGGGTTATTAGAGATTGACTTCTGGATTTTTCACGCGCCTTG 353
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 GGTGATTGGTTTCTTCCTAGGGTTATTAGAGATTGAGTTCTGGATTTTTCACGCGCCTTG 356
Query 354 GATTTGATCTAATGTACCCTCtctttttcatgtcttttatctggtttagattttgatttt 413
||||||||||||||||| |||| ||||||||||| || |||||||||||||||| | |||
Sbjct 357 GATTTGATCTAATGTACTCTCT-TTTTTCATGTC-TTAATCTGGTTTAGATTTTTA-TTT 413
Query 414 tgagatcttttg-t-tataggttgcaagttctgtgtttttgttagtctttttagtttCTG 471
|||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 414 TGAGATCTTTTGTTATATAGGTTGCAAGTTCTGT-ATTTTGTTAGGCTTTTTAGTTTCTG 472
Query 472 TGTTGATTATGATTCTCTTGGTTTAGGAGAGATTTGGGTG-T-TT-ATTGATTGAGTTTG 528
|||||||||||||||||||||| ||||||||||||||||| | || | || |||||||||
Sbjct 473 TGTTGATTATGATTCTCTTGGTCTAGGAGAGATTTGGGTGTTGTTAACTGTTTGAGTTTG 532
Query 529 AGAATTGTGAAATTAGG---TTTATTTTTGGTTCTCTGATCTGAAACTTGGGTAGAAGAA 585
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 533 AGAATTGTGAAATTAGGTTTTTTTTTTTTGGTTCTCTGATCTGAAACTTGGGTAGAAGAA 592
Query 586 AAACATGGAAGAAGTTGAAGCTGCTAACAGATCAGCTATAGAAAGCTGCCATGGAGTGTT 645
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 593 AAACATGGAGGAAGTTGAAGCTGCTAACAGATCAGCTATAGAAAGCTGTCATGGAGTGTT 652
Query 646 AAATCTCTTGTCACAACAAACCAGTGATCCCAAATCCTTAATGGTTGAAACAGGAGAAGC 705
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 653 AAATCTCTTGTCACAACGAACCAGTGATCCCAAATCCTTAACGGTTGAAACAGGAGAAGT 712
Query 706 AGTTTCCAAGTTCAAGAGAGTAGCTTCTCTGTTAACTAGAGGGTTAGGCCATGGAAAGTT 765
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGTTTCCAAGTTCAAAAGAGTAGCTTCTCTGTTAACTAGAGGGTTAGGCCATGGAAAGTT 772
Query 766 TAGGAGTATCAACAAGTTTAGGTCATCTTTTCCTCAACACATCTTCTTAGAGAGCCCTAT 825
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 773 TAGGAGTACCAACAAGTTTAGGTCATCTTTTCCTCAACACATCTTCTTAGAGAGTCCTAT 832
Query 826 TTGCTGTGGTAATGATTTAAGTGGTGATTACACTCAAGTTCTTGCACCAGAGCCACTTCA 885
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTGCTGCGGTAATGATCTAAGTGGTGATTACACTCAAGTTCTTGCACCAGAGCCACTTCA 892
Query 886 GATGGTTCCAGCTTCTGCTGTTTATAATGAAATGGAGCCAAAACACCAATTGGGTCATCC 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GATGGTTCCAGCTTCTGCTGTTTATAATGAAATGGAGCCAAAACACCAATTGGGTCATCC 952
Query 946 TCCATTGATGCTTAGTCACAAAATGTGTGTTGACAAGTCGTTTCTGGAGTTGAAGCCACC 1005
| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 953 TTCATTAATGCTTAGTCACAAAATGTGTGTTGACAAGTCGTTTCTGGAGTTAAAGCCACC 1012
Query 1006 GCCTTTTCGTGCTCCTTATCAGTTAATCCACAACAACCAGCAGATAGCTTACTCTAGGAG 1065
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1013 TCCTTTTCGTGCTCCTTATCAGTTAATCCACAACCACCAGCAGATAGCTTACTCCAGGAG 1072
Query 1066 CAATAGCGGTGTAAACCTTAAGTTTGATGGGTCTGGTAGTAGTTGCTATACTCCGAGCGT 1125
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1073 TAATAGCGGTGTAAACCTTAAGTTTGATGGATCTGGTAGTAGTTGCTATACTCCGAGTGT 1132
Query 1126 ATCAAACGGATCAAGATCATTTGTGTCATCTCTTAGTATGGATGCTAGTGTAGCAGATTA 1185
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 1133 ATCAAACGGATCAAGATCATTTGTGTCATCTCTTAGCATGGATGCTAGTGTAACAGACTA 1192
Query 1186 TGATAGGAACTCGTTCCATTTGACCGGATTATCCCGTGGGTCTGACCATATATCGCAGCA 1245
||||||||||||||||||||||||||||| |||||||||||||||| | | |||||
Sbjct 1193 CGATAGGAACTCGTTCCATTTGACCGGATTGTCCCGTGGGTCTGACC--A-A---CAGCA 1246
Query 1246 TTCCCGGAAGATGTGCTCTGGTAGTTTGAAATGCGGAAGTAGAAGCAAATGTCATTGTTC 1305
| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1247 TACCCGGAAGATGTGCTCTGGTAGTTTGAAATGCGGAAGTCGAAGCAAATGTCACTGTTC 1306
Query 1306 CAAGAAAAGGAAACTGAGGGTAAAACGATCAATCAAGGTGCCTGCAATCAGTAACAAGAT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CAAGAAAAGGAAACTGAGGGTAAAACGATCAATCAAGGTGCCTGCAATCAGTAACAAGAT 1366
Query 1366 TGCTGATATCCCTCCAGATGAGTATTCATGGAGGAAGTATGGACAGAAACCGATAAAGGG 1425
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1367 TGCAGACATTCCTCCAGATGAGTATTCTTGGAGGAAGTATGGACAGAAACCGATAAAGGG 1426
Query 1426 TTCACCGCATCCACGGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAA 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TTCACCGCATCCACGGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAA 1486
Query 1486 GCATGTGGAGCGATGTATCGATGAAACTTCAATGTTAATTGTAACTTACGAAGGCGAGCA 1545
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GCATGTGGAGCGATGTATTGATGAAACTTCAATGTTAATTGTAACTTACGAAGGCGAGCA 1546
Query 1546 TAACCATTCAAGAATATTGTCTTCACAATCAGCGCACACCTGATGA-A-A----CA---- 1595
||||||||||||||||||||||||||||||||| ||||| |||||| | | ||
Sbjct 1547 TAACCATTCAAGAATATTGTCTTCACAATCAGCTCACACTTGATGATACAGAGTCAATAT 1606
Query 1596 G-A-GTCC----G---TCTACTCTTGGATTTGAAGAA-GAATGAATTTGATTCTAGAAAC 1645
| | |||| | ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1607 GTATGTCCTTTTGGCGTCTACTCTTGGATTTGAAGAAAGAATGAATTTGATTCAAGAAAC 1666
Query 1646 CGGTCTTTGTAGCTCTAATTTGCAATTGTATATTTCCACTTTGACATGA-GTTATAAGAG 1704
|||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1667 CGGTCTTTGTAGCTCTGATTTGCAATTGTATATTTCCACTCTGACA-GAAGTTATAAGAG 1725
Query 1705 CACTTGTGAACTCGGGTTCTGTGGTGGCAGACAGTAGCAAGAAACATCAACAATTTGGTT 1764
||||||||||||||| || ||||| | || ||||| |||||||||||||||||||||||
Sbjct 1726 CACTTGTGAACTCGGATTATGTGGCAG-AGGCAGTACCAAGAAACATCAACAATTTGGTT 1784
Query 1765 TCAACCGAGCTTTTTCTT-AGATATAT 1790
||||| |||||||||||| | ||||||
Sbjct 1785 TCAACTGAGCTTTTTCTTCA-ATATAT 1810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88553761380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5