BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477736
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04700.1 | Symbols: | Protein of unknown function (DUF1685)... 1426 0.0
> AT3G04700.1 | Symbols: | Protein of unknown function (DUF1685)
| chr3:1276668-1277824 FORWARD LENGTH=1073
Length=1073
Score = 1426 bits (772), Expect = 0.0
Identities = 977/1068 (91%), Gaps = 46/1068 (4%)
Strand=Plus/Plus
Query 1 GGTTGGGAAAAATCCAACTAGAGAAGAGCAT-AAAGCAGACATCTGATCAGCCCGACCCA 59
||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1 GGTTGGGAAAAATCCAACTAGAGAAGAGCATAAAAGTAGACATCTGATCAACCCGACCCA 60
Query 60 TAATAACC--TTTTTGTTGGCCGCGTAATATGTTCGAGCGCGGCCATCACACAAAGAACA 117
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TAATAACCTTTTTTTGTTGGCCGCGTAATATGTTCGAGCGCGGCCATCACACTAAGAACA 120
Query 118 TACATaaaaaaaaaaaaTCCACAGGATTCAAAGCCCTT-AGCTTTGAAAATAGTCTCTTA 176
| ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 121 TTCAT---AAAAAAAAATCCACAGGATTCAAAGCCCTTAAGCTTTGATCATAGTCTCTTA 177
Query 177 AAGAGGTAATAAATCCATAAAGAAGAGCCCCAATTTGCATTCGTAATCCACCTCTTCATA 236
|||||||| |||| ||||||| ||||||||||||||||||| || ||| | | ||
Sbjct 178 AAGAGGTAGTAAAACCATAAACTAGAGCCCCAATTTGCATTCACAAGCCA---C--C-TA 231
Query 237 ATACATTAGCTTTTGGTCA-TTCTGCTTTATATACACATCAAGTaaaaaaaatcaaaaaT 295
| |||||||||| |||||| |||||||||||||||||||||||| | ||||||
Sbjct 232 ACACATTAGCTTCTGGTCATTTCTGCTTTATATACACATCAAGT-------A--AAAAAT 282
Query 296 GGTGAGAAGAAGAGAAGGTCTTACATTGCCAATCATATCACCGGCGCTTCCCGAGGTCAG 355
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 283 GGTGAGAAGAAGAGAAGGTCTTACATTGCCAATCATAAAACCGGCGCTTCCCGAGGTCAG 342
Query 356 AACAGCAGCGACAACGCCGGTGGCCTCACAGAAACCAAAACATCGATTATCAAAACAACT 415
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 343 ATCAGCAGCGACAACGCCGGTGGCCTCACAGAAACCAAAACATCGTTTATCGAAACAACT 402
Query 416 TTCTATGTGTGAAACACCAAGAGACGTTGCTTGGGAAAGAAGAAGACGTCAGATGATAAT 475
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 403 ATCTATGTGTGAAACACCAAGAGACGTTGCTTGGGAAAGAAGAAGGCGTCAGATGATAAT 462
Query 476 GATTCAAGAAAAGAAGCTGCTTCATAAAGGCGCTTCAGACAATCTTTGTGTACAAGCGAA 535
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 463 GATTCAAGAAAAGAAGCTGCTTCATAAGGGCGCTTCAGACAATCTTTGTATACAGGCGAA 522
Query 536 TCTAACGGATGAAGATTTAAACGAGCTAAAAGGATCGATTGAGCTAGGTTTCGGTTTCAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TCTAACGGATGAAGATTTAAACGAGCTAAAAGGATCGATTGAGCTAGGTTTCGGTTTCAA 582
Query 596 TGAAGAAGCAGGACAAAAGCTATGCAATACATTACCAGCTCTTGATCTTTACTTTGCAGT 655
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 583 TGAAGAAGCAGGACAAAAGCTTTGTAATACATTACCAGCTCTTGATCTTTACTTTGCAGT 642
Query 656 GAATCGTCAGCTCTCGCCTCTCCCTTCACCTAGCAGCAGCCGTAGCAGCAGTGCATCTGC 715
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 643 GAATCGTCAGCTCTCGCCTCTTCCTTCACCTAGCAGCAGCCGTAGCAGCAGTGCATCTGC 702
Query 716 ATCAGCTTTCTCATACAGTATACCTTGTAGTCCaaaaaaaaCTGATTCAGATTCT-TTGA 774
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 703 GTCAACTTTCTCATACAGTATACCTTGTAGTCCAAAGAAAACTGATTCAGATTCTGTT-A 761
Query 775 AAATCTTATGCCCAGGGGATGATCCTCAACAAATGAAGCAAAGATTGAGACATTGGGCTC 834
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
Sbjct 762 AAATCTTATGCCCAGGGGACGATCCTCAACAAATGAAGCAGAGGTTGAGACATTGGGCAC 821
Query 835 AAGCAGTTGCATGTTCTGTTATGCAGTCTTATTGAAGG--A---G---T--G-TATA-TG 882
||||||||||||||||||||||||||||||||||||| | | | | | | |
Sbjct 822 AAGCAGTTGCATGTTCTGTTATGCAGTCTTATTGAAGATTATAAGCACTCAGATTTTCTT 881
Query 883 T-GAGAGATAGGAAGAAACGAATCTTTTATAATTAGGATTCGGAAGAAACaaaaaaaaaa 941
| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||
Sbjct 882 TTGAGAGATAGGAAGAAGCGAATCTTTTACAATTAGGATTCGAAAGAAACAAAAAACAAC 941
Query 942 tagaaaattttggagaaaaagagatgaaaaTTGTGGCTCTGTATATATATACTCACAAGA 1001
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 942 TAGAAAATTTTGGAGAAAAAGAGATGAAAATTGTGGCTCTGTATATA-A--CTCACAAGA 998
Query 1002 TGAGAGAAAGAGAAAGaaaaaaaaaaCACCTCTTGTTCATAAGCTGTA 1049
||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 999 TGAGAGAAAGAAAAAGAAAAA-----CACCTCTTGTTCATAAGCTGTA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51439766528
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5