BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477736 Length=1049 Score E Sequences producing significant alignments: (Bits) Value AT3G04700.1 | Symbols: | Protein of unknown function (DUF1685)... 1426 0.0 > AT3G04700.1 | Symbols: | Protein of unknown function (DUF1685) | chr3:1276668-1277824 FORWARD LENGTH=1073 Length=1073 Score = 1426 bits (772), Expect = 0.0 Identities = 977/1068 (91%), Gaps = 46/1068 (4%) Strand=Plus/Plus Query 1 GGTTGGGAAAAATCCAACTAGAGAAGAGCAT-AAAGCAGACATCTGATCAGCCCGACCCA 59 ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct 1 GGTTGGGAAAAATCCAACTAGAGAAGAGCATAAAAGTAGACATCTGATCAACCCGACCCA 60 Query 60 TAATAACC--TTTTTGTTGGCCGCGTAATATGTTCGAGCGCGGCCATCACACAAAGAACA 117 |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 TAATAACCTTTTTTTGTTGGCCGCGTAATATGTTCGAGCGCGGCCATCACACTAAGAACA 120 Query 118 TACATaaaaaaaaaaaaTCCACAGGATTCAAAGCCCTT-AGCTTTGAAAATAGTCTCTTA 176 | ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 121 TTCAT---AAAAAAAAATCCACAGGATTCAAAGCCCTTAAGCTTTGATCATAGTCTCTTA 177 Query 177 AAGAGGTAATAAATCCATAAAGAAGAGCCCCAATTTGCATTCGTAATCCACCTCTTCATA 236 |||||||| |||| ||||||| ||||||||||||||||||| || ||| | | || Sbjct 178 AAGAGGTAGTAAAACCATAAACTAGAGCCCCAATTTGCATTCACAAGCCA---C--C-TA 231 Query 237 ATACATTAGCTTTTGGTCA-TTCTGCTTTATATACACATCAAGTaaaaaaaatcaaaaaT 295 | |||||||||| |||||| |||||||||||||||||||||||| | |||||| Sbjct 232 ACACATTAGCTTCTGGTCATTTCTGCTTTATATACACATCAAGT-------A--AAAAAT 282 Query 296 GGTGAGAAGAAGAGAAGGTCTTACATTGCCAATCATATCACCGGCGCTTCCCGAGGTCAG 355 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 283 GGTGAGAAGAAGAGAAGGTCTTACATTGCCAATCATAAAACCGGCGCTTCCCGAGGTCAG 342 Query 356 AACAGCAGCGACAACGCCGGTGGCCTCACAGAAACCAAAACATCGATTATCAAAACAACT 415 | ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 343 ATCAGCAGCGACAACGCCGGTGGCCTCACAGAAACCAAAACATCGTTTATCGAAACAACT 402 Query 416 TTCTATGTGTGAAACACCAAGAGACGTTGCTTGGGAAAGAAGAAGACGTCAGATGATAAT 475 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 403 ATCTATGTGTGAAACACCAAGAGACGTTGCTTGGGAAAGAAGAAGGCGTCAGATGATAAT 462 Query 476 GATTCAAGAAAAGAAGCTGCTTCATAAAGGCGCTTCAGACAATCTTTGTGTACAAGCGAA 535 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 463 GATTCAAGAAAAGAAGCTGCTTCATAAGGGCGCTTCAGACAATCTTTGTATACAGGCGAA 522 Query 536 TCTAACGGATGAAGATTTAAACGAGCTAAAAGGATCGATTGAGCTAGGTTTCGGTTTCAA 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 TCTAACGGATGAAGATTTAAACGAGCTAAAAGGATCGATTGAGCTAGGTTTCGGTTTCAA 582 Query 596 TGAAGAAGCAGGACAAAAGCTATGCAATACATTACCAGCTCTTGATCTTTACTTTGCAGT 655 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 583 TGAAGAAGCAGGACAAAAGCTTTGTAATACATTACCAGCTCTTGATCTTTACTTTGCAGT 642 Query 656 GAATCGTCAGCTCTCGCCTCTCCCTTCACCTAGCAGCAGCCGTAGCAGCAGTGCATCTGC 715 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 643 GAATCGTCAGCTCTCGCCTCTTCCTTCACCTAGCAGCAGCCGTAGCAGCAGTGCATCTGC 702 Query 716 ATCAGCTTTCTCATACAGTATACCTTGTAGTCCaaaaaaaaCTGATTCAGATTCT-TTGA 774 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || | Sbjct 703 GTCAACTTTCTCATACAGTATACCTTGTAGTCCAAAGAAAACTGATTCAGATTCTGTT-A 761 Query 775 AAATCTTATGCCCAGGGGATGATCCTCAACAAATGAAGCAAAGATTGAGACATTGGGCTC 834 ||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| | Sbjct 762 AAATCTTATGCCCAGGGGACGATCCTCAACAAATGAAGCAGAGGTTGAGACATTGGGCAC 821 Query 835 AAGCAGTTGCATGTTCTGTTATGCAGTCTTATTGAAGG--A---G---T--G-TATA-TG 882 ||||||||||||||||||||||||||||||||||||| | | | | | | | Sbjct 822 AAGCAGTTGCATGTTCTGTTATGCAGTCTTATTGAAGATTATAAGCACTCAGATTTTCTT 881 Query 883 T-GAGAGATAGGAAGAAACGAATCTTTTATAATTAGGATTCGGAAGAAACaaaaaaaaaa 941 | ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| || Sbjct 882 TTGAGAGATAGGAAGAAGCGAATCTTTTACAATTAGGATTCGAAAGAAACAAAAAACAAC 941 Query 942 tagaaaattttggagaaaaagagatgaaaaTTGTGGCTCTGTATATATATACTCACAAGA 1001 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 942 TAGAAAATTTTGGAGAAAAAGAGATGAAAATTGTGGCTCTGTATATA-A--CTCACAAGA 998 Query 1002 TGAGAGAAAGAGAAAGaaaaaaaaaaCACCTCTTGTTCATAAGCTGTA 1049 ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 999 TGAGAGAAAGAAAAAGAAAAA-----CACCTCTTGTTCATAAGCTGTA 1041 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51439766528 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5