BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477739
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04715.1 | Symbols: | pseudogene, similar to MAP3K alpha 1 ... 1168 0.0
AT2G40560.1 | Symbols: | Protein kinase superfamily protein | ... 244 7e-64
AT2G40580.1 | Symbols: | Protein kinase superfamily protein | ... 200 2e-50
> AT3G04715.1 | Symbols: | pseudogene, similar to MAP3K alpha
1 protein kinase, similar to putative serine/threonine protein
kinase GB:AAB87581 (Arabidopsis thaliana),; blastp match
of 32% identity and 3.4e-21 P-value to GP|3688193|emb|CAA08995.1||AJ010091
MAP3K alpha 1 protein kinase {Brassica napus}
| chr3:1281643-1282551 REVERSE LENGTH=909
Length=909
Score = 1168 bits (632), Expect = 0.0
Identities = 732/781 (94%), Gaps = 4/781 (1%)
Strand=Plus/Plus
Query 1 AGTCATCTTCGTTCAACCACTTGAAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTT 60
|||| ||||||||||| ||| | |||| ||||| |||||||||||| |||||||||||||
Sbjct 118 AGTCGTCTTCGTTCAATCACATAAAGATTCTCGTGAAAGAGCTTAGGATCATGCTTTGTT 177
Query 61 TCCGCAATCATCCTCGCATCGTCCAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAAC 120
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 178 TCCACAATCATCCTCGCATCGTCCAAGCCTCAAGCCCTGTTCTTCACTTAGGGATCCAAC 237
Query 121 CCGAAGGATGTCACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 180
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCGAAGAATGTTACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 297
Query 181 CCAAGTTTCGTGGGAAACCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCA 240
|| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 298 CCCAGTTTCGTGGGAAACCAATGCCTGAGAATATTATCAAAGGTGCCGCTCTTATGATCA 357
Query 241 TACAAGGACTTGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCA 300
|||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 358 TACAAGGACTCGACGCTCTTCACTCACATGGTTACGTTCACTGCGATCTCAAGCCAGCCA 417
Query 301 ACGTCCTCGTCTTCCCTTCCACAACCTTCGGAGAGCCATGGGATCTCAAGCTTGCTGATT 360
|||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 418 ACGTCCTCGTCTTCCCTTCCACCACTTTTGGAGAGCCATGGGATCTTAAGCTTGCTGATT 477
Query 361 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGGAGCAGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGCTGCAGT 537
Query 421 ACATGCCGCCAGAATCGT-TTGGACCTGATGGAGTGATGGGACCGGCAGTTGATATATGG 479
||||||| ||| |||| | |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 538 ACATGCCACCATAATC-TCTTGGACATGATGGAGTGATGGGACCGGCCGTTGATATATGG 596
Query 480 TCTCTAGGGTGTATGGTTATTCAGATGTTTGGAGGATGTCCAGAGATGATGGGAGACTGT 539
|||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 597 TCTCTAGGGTGTGTGGTTATTCAGATGTTTGGAGGTTGTCCAGTGATGACCAGAGACTGT 656
Query 540 TACATGTGGAGACTTCCCAAACTTATATCTCCAGTGGCCAACGACTTCTTGATGCGGTGC 599
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 TACATGTGGGGGCTTCCCAAACTTATATCTCCGGTGGCCAACGACTTCTTGATGCGGTGC 716
Query 600 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCGGCCGAGCTGTTGAGCCATCCTTTTGTT 659
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 717 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCAGCCCAGCTGTTGAGCCATCCTTTTGTT 776
Query 660 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGCTTCCATGTCATTCTT-TCTTAAGGTT 718
||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||||||
Sbjct 777 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGATTCCGTGTCATTCTTAT-TTAAGGTT 835
Query 719 TCCTTCCGCCATAATTGACAAAGTGATGGAACAAGGAGGAATGATGGTTTGAAGACCTTA 778
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 836 TCCTTCCGCCATAATTGACAACGTGGTGGAACAAGGAGGAATGATGCTTTGAAGACCTTA 895
Query 779 A 779
|
Sbjct 896 A 896
> AT2G40560.1 | Symbols: | Protein kinase superfamily protein
| chr2:16938705-16939616 REVERSE LENGTH=912
Length=912
Score = 244 bits (132), Expect = 7e-64
Identities = 295/371 (80%), Gaps = 22/371 (6%)
Strand=Plus/Plus
Query 24 AAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTTTCCGCAATCATCCTCGCATCGTC 83
|||| ||||||||| ||||| || ||||||| | ||||||| |||||||||||||||||
Sbjct 163 AAGATTCTCGAGAAGGAGCTCAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTC 222
Query 84 CAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAACCCGAAGGAT-GT-C-ACATCTAT 140
||||| |||| | | |||||||| ||||||||| | | || | | ||||||||
Sbjct 223 CAAGCCTCAA-ACAAG--CTTCACTTACAAATCCAACCCTACGAATATTGCTACATCTAT 279
Query 141 ATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCTCCA-A--GTTT-CGT-GG-- 193
||||||| ||||||||||| | |||| | ||| | | | | | |||| ||| ||
Sbjct 280 ATGGAGTACGCCTCCAAAGGTAATCTC--C-ATA-GGTTTATATATGGTTTCCGTCGGAA 335
Query 194 -GAA-A-CCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCATACAAGGACT 250
||| | || || |||||| | || ||| || | |||| ||||||| || |||||||
Sbjct 336 AGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACT 395
Query 251 TGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCAACGTCCTCGT 310
|| ||||||||||| || || |||||| ||||||||||||||||| ||||||| ||| |
Sbjct 396 CGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCT 455
Query 311 CTTCCCTTCCACAACCTTC-GGAGAGCCATGGGATCTCAAGCTTGCTGATTTCGGTTCAT 369
|||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||
Sbjct 456 CTTCCCTTCCACAA-CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCAT 514
Query 370 CTAAAGAGCCT 380
| |||||||||
Sbjct 515 CCAAAGAGCCT 525
> AT2G40580.1 | Symbols: | Protein kinase superfamily protein
| chr2:16943864-16945003 FORWARD LENGTH=1140
Length=1140
Score = 200 bits (108), Expect = 2e-50
Identities = 326/427 (76%), Gaps = 31/427 (7%)
Strand=Plus/Plus
Query 24 AAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTTTCCGCAATC-AT-CCTCGCATCG 81
|||||||||||||| ||||| || ||||||||| |||||| ||| | || ||| ||| |
Sbjct 248 AAGAATCTCGAGAAGGAGCTCAGGATCATGCTTCGTTTCCACAA-CAATCCCT-TCATAG 305
Query 82 TCCAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAAC-CC-GAAG---GA-----TGT 131
||| ||| |||||| | | ||||||| | || | ||| || ||| || |||
Sbjct 306 TCCGAGCTTCAAGCGATCATCTTCACTTTGCGA-CTAACACCAAAAGCATGAGTTTGTGT 364
Query 132 CACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCTCCAAGTTTC-G 190
||||||| ||||||| ||| ||| ||| | |||| ||| |||||||| | | | |
Sbjct 365 TACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAACAAGATGATCTCTGA-TGCCGG 423
Query 191 TGGGAAACCAATGCCTG-AGAATA-TGATCAAACGTGCCGCTCTTATGATCATACAAGGA 248
||| | | || ||| || ||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 424 AGGG--A-GATTGTCTGAAG-ATAGTG-TCAGACGTGCCACTCGTATGATCCTACAAGGA 478
Query 249 CTTGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCAACGTCCTC 308
|| | ||||||||||| | || | || |||||||||||||||||| | || || ||
Sbjct 479 CTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCAAGCCATCAAATGTACTT 538
Query 309 GTCTTCCCTTCC-ACAAC-CTTCGGAGAGCCATGGGATCTCAAGCTTGCTGATTTCGGTT 366
|||||||||||| || || | | |||||||||||||||||||||||||||| ||||||||
Sbjct 539 GTCTTCCCTTCCAAC-ACACGT-GGAGAGCCATGGGATCTCAAGCTTGCTGGTTTCGGTT 596
Query 367 CATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACG---GAGCAGTACA 423
||| ||||||||| ||| ||| ||||| | ||| |||||||| || ||| ||||||
Sbjct 597 TATCCAAAGAGCCTACTATGGACTCTAGCTTGTTGTTTCCTGGAACCCTTGAGGAGTACA 656
Query 424 TGCCGCC 430
|| ||||
Sbjct 657 TGTCGCC 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5