BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477739 Length=779 Score E Sequences producing significant alignments: (Bits) Value AT3G04715.1 | Symbols: | pseudogene, similar to MAP3K alpha 1 ... 1168 0.0 AT2G40560.1 | Symbols: | Protein kinase superfamily protein | ... 244 7e-64 AT2G40580.1 | Symbols: | Protein kinase superfamily protein | ... 200 2e-50 > AT3G04715.1 | Symbols: | pseudogene, similar to MAP3K alpha 1 protein kinase, similar to putative serine/threonine protein kinase GB:AAB87581 (Arabidopsis thaliana),; blastp match of 32% identity and 3.4e-21 P-value to GP|3688193|emb|CAA08995.1||AJ010091 MAP3K alpha 1 protein kinase {Brassica napus} | chr3:1281643-1282551 REVERSE LENGTH=909 Length=909 Score = 1168 bits (632), Expect = 0.0 Identities = 732/781 (94%), Gaps = 4/781 (1%) Strand=Plus/Plus Query 1 AGTCATCTTCGTTCAACCACTTGAAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTT 60 |||| ||||||||||| ||| | |||| ||||| |||||||||||| ||||||||||||| Sbjct 118 AGTCGTCTTCGTTCAATCACATAAAGATTCTCGTGAAAGAGCTTAGGATCATGCTTTGTT 177 Query 61 TCCGCAATCATCCTCGCATCGTCCAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAAC 120 ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 178 TCCACAATCATCCTCGCATCGTCCAAGCCTCAAGCCCTGTTCTTCACTTAGGGATCCAAC 237 Query 121 CCGAAGGATGTCACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 180 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CCGAAGAATGTTACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 297 Query 181 CCAAGTTTCGTGGGAAACCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCA 240 || ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 298 CCCAGTTTCGTGGGAAACCAATGCCTGAGAATATTATCAAAGGTGCCGCTCTTATGATCA 357 Query 241 TACAAGGACTTGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCA 300 |||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct 358 TACAAGGACTCGACGCTCTTCACTCACATGGTTACGTTCACTGCGATCTCAAGCCAGCCA 417 Query 301 ACGTCCTCGTCTTCCCTTCCACAACCTTCGGAGAGCCATGGGATCTCAAGCTTGCTGATT 360 |||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||| Sbjct 418 ACGTCCTCGTCTTCCCTTCCACCACTTTTGGAGAGCCATGGGATCTTAAGCTTGCTGATT 477 Query 361 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGGAGCAGT 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 478 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGCTGCAGT 537 Query 421 ACATGCCGCCAGAATCGT-TTGGACCTGATGGAGTGATGGGACCGGCAGTTGATATATGG 479 ||||||| ||| |||| | |||||| ||||||||||||||||||||| |||||||||||| Sbjct 538 ACATGCCACCATAATC-TCTTGGACATGATGGAGTGATGGGACCGGCCGTTGATATATGG 596 Query 480 TCTCTAGGGTGTATGGTTATTCAGATGTTTGGAGGATGTCCAGAGATGATGGGAGACTGT 539 |||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||| Sbjct 597 TCTCTAGGGTGTGTGGTTATTCAGATGTTTGGAGGTTGTCCAGTGATGACCAGAGACTGT 656 Query 540 TACATGTGGAGACTTCCCAAACTTATATCTCCAGTGGCCAACGACTTCTTGATGCGGTGC 599 ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 657 TACATGTGGGGGCTTCCCAAACTTATATCTCCGGTGGCCAACGACTTCTTGATGCGGTGC 716 Query 600 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCGGCCGAGCTGTTGAGCCATCCTTTTGTT 659 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 717 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCAGCCCAGCTGTTGAGCCATCCTTTTGTT 776 Query 660 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGCTTCCATGTCATTCTT-TCTTAAGGTT 718 ||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||| Sbjct 777 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGATTCCGTGTCATTCTTAT-TTAAGGTT 835 Query 719 TCCTTCCGCCATAATTGACAAAGTGATGGAACAAGGAGGAATGATGGTTTGAAGACCTTA 778 ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| Sbjct 836 TCCTTCCGCCATAATTGACAACGTGGTGGAACAAGGAGGAATGATGCTTTGAAGACCTTA 895 Query 779 A 779 | Sbjct 896 A 896 > AT2G40560.1 | Symbols: | Protein kinase superfamily protein | chr2:16938705-16939616 REVERSE LENGTH=912 Length=912 Score = 244 bits (132), Expect = 7e-64 Identities = 295/371 (80%), Gaps = 22/371 (6%) Strand=Plus/Plus Query 24 AAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTTTCCGCAATCATCCTCGCATCGTC 83 |||| ||||||||| ||||| || ||||||| | ||||||| ||||||||||||||||| Sbjct 163 AAGATTCTCGAGAAGGAGCTCAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTC 222 Query 84 CAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAACCCGAAGGAT-GT-C-ACATCTAT 140 ||||| |||| | | |||||||| ||||||||| | | || | | |||||||| Sbjct 223 CAAGCCTCAA-ACAAG--CTTCACTTACAAATCCAACCCTACGAATATTGCTACATCTAT 279 Query 141 ATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCTCCA-A--GTTT-CGT-GG-- 193 ||||||| ||||||||||| | |||| | ||| | | | | | |||| ||| || Sbjct 280 ATGGAGTACGCCTCCAAAGGTAATCTC--C-ATA-GGTTTATATATGGTTTCCGTCGGAA 335 Query 194 -GAA-A-CCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCATACAAGGACT 250 ||| | || || |||||| | || ||| || | |||| ||||||| || ||||||| Sbjct 336 AGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACT 395 Query 251 TGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCAACGTCCTCGT 310 || ||||||||||| || || |||||| ||||||||||||||||| ||||||| ||| | Sbjct 396 CGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCT 455 Query 311 CTTCCCTTCCACAACCTTC-GGAGAGCCATGGGATCTCAAGCTTGCTGATTTCGGTTCAT 369 |||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||| Sbjct 456 CTTCCCTTCCACAA-CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCAT 514 Query 370 CTAAAGAGCCT 380 | ||||||||| Sbjct 515 CCAAAGAGCCT 525 > AT2G40580.1 | Symbols: | Protein kinase superfamily protein | chr2:16943864-16945003 FORWARD LENGTH=1140 Length=1140 Score = 200 bits (108), Expect = 2e-50 Identities = 326/427 (76%), Gaps = 31/427 (7%) Strand=Plus/Plus Query 24 AAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTTTCCGCAATC-AT-CCTCGCATCG 81 |||||||||||||| ||||| || ||||||||| |||||| ||| | || ||| ||| | Sbjct 248 AAGAATCTCGAGAAGGAGCTCAGGATCATGCTTCGTTTCCACAA-CAATCCCT-TCATAG 305 Query 82 TCCAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAAC-CC-GAAG---GA-----TGT 131 ||| ||| |||||| | | ||||||| | || | ||| || ||| || ||| Sbjct 306 TCCGAGCTTCAAGCGATCATCTTCACTTTGCGA-CTAACACCAAAAGCATGAGTTTGTGT 364 Query 132 CACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCTCCAAGTTTC-G 190 ||||||| ||||||| ||| ||| ||| | |||| ||| |||||||| | | | | Sbjct 365 TACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAACAAGATGATCTCTGA-TGCCGG 423 Query 191 TGGGAAACCAATGCCTG-AGAATA-TGATCAAACGTGCCGCTCTTATGATCATACAAGGA 248 ||| | | || ||| || ||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 424 AGGG--A-GATTGTCTGAAG-ATAGTG-TCAGACGTGCCACTCGTATGATCCTACAAGGA 478 Query 249 CTTGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCAACGTCCTC 308 || | ||||||||||| | || | || |||||||||||||||||| | || || || Sbjct 479 CTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCAAGCCATCAAATGTACTT 538 Query 309 GTCTTCCCTTCC-ACAAC-CTTCGGAGAGCCATGGGATCTCAAGCTTGCTGATTTCGGTT 366 |||||||||||| || || | | |||||||||||||||||||||||||||| |||||||| Sbjct 539 GTCTTCCCTTCCAAC-ACACGT-GGAGAGCCATGGGATCTCAAGCTTGCTGGTTTCGGTT 596 Query 367 CATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACG---GAGCAGTACA 423 ||| ||||||||| ||| ||| ||||| | ||| |||||||| || ||| |||||| Sbjct 597 TATCCAAAGAGCCTACTATGGACTCTAGCTTGTTGTTTCCTGGAACCCTTGAGGAGTACA 656 Query 424 TGCCGCC 430 || |||| Sbjct 657 TGTCGCC 663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37876546838 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5