BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477741
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04720.1 | Symbols: PR4, HEL, PR-4 | pathogenesis-related 4 ... 1096 0.0
> AT3G04720.1 | Symbols: PR4, HEL, PR-4 | pathogenesis-related
4 | chr3:1285524-1286562 REVERSE LENGTH=837
Length=837
Score = 1096 bits (593), Expect = 0.0
Identities = 706/759 (93%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 1 AAAGACTTATCGATCATGAAGATCGGACTTAGCATAACCATCATACTTTTATCATACACG 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 17 AAAGACTTATCGATCATGAAGATCAGACTTAGCATAACCATCATACTTTTATCATACACA 76
Query 61 GTGGCTACGGTTGCCGGACAACAATGCGGTCGTCAAGGCGGTGGTCGGACTTGTCCCGGA 120
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 77 GTGGCTACGGTGGCCGGACAACAATGCGGTCGTCAAGGCGGTGGTCGAACTTGTCCCGGT 136
Query 121 AACATCTGCTGCAGCCAATTCGGCTACTGTGGCACCACCGCGGACTACTGTTCTCCGGA- 179
|||||||||||||| || | ||| |||||||| ||||||||||||||||||||||| ||
Sbjct 137 AACATCTGCTGCAGTCAGTACGGTTACTGTGGTACCACCGCGGACTACTGTTCTCC-GAC 195
Query 180 CAACAACTGCCAGAGCAATTGTTGGGGAAGCGGACCTAGCGGACCAGGGGAGAGCGCGTC 239
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 196 CAACAACTGTCAGAGCAATTGTTGGGGAAGTGGGCCTAGCGGACCAGGGGAGAGCGCGTC 255
Query 240 GAACGTACGCGCCACCTACCATTTCTACAATCCGGCGCAGAATAATTGGGATTTGAGAGC 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 256 GAACGTACGCGCCACCTACCATTTCTATAATCCGGCGCAGAATAATTGGGATTTGAGAGC 315
Query 300 CGTGAGTGCTTATTGCTCCACGTGGGATGCTGATAAGCCATACGCATGGCGAAGTAAGTA 359
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 316 CGTGAGTGCTTATTGCTCCACGTGGGATGCTGATAAGCCGTACGCATGGCGGAGCAAGTA 375
Query 360 TGGATGGACCGCCTTCTGCGGACCGGCAGGACCTCGTGGTCAAGCATCTTGCGGCAAGTG 419
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 376 TGGCTGGACCGCCTTCTGCGGGCCGGCAGGACCTCGTGGTCAAGCTTCTTGCGGCAAGTG 435
Query 420 CTTAAGGGTAAAGAACACAAGAACAAATGCTGCAGTAACGGTGAGAATAGTGGACCAATG 479
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 436 TTTAAGGGTGAAGAACACAAGAACAAATGCTGCAGTAACTGTGAGAATAGTGGACCAATG 495
Query 480 TAGCAATGGAGGATTGGATTTGGATGTTGCAATGTTCAATCAAATAGACACCGATGGTTT 539
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 496 CAGCAACGGAGGCTTGGATTTGGATGTAGCAATGTTCAATCAAATAGACACCGATGGTTT 555
Query 540 TGGCTATCAACAAGGCCATCTCATTGTTGATTACCAATTTGTCGACTGTGGCAATGAGCT 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 556 TGGCTATCAACAAGGCCATCTCATTGTTGACTACCAATTTGTCGACTGTGGCAATGAGCT 615
Query 600 CATTGGGCAGCCTGATTTCAAAAACATCCTTGTTTCGGCCATTGATCGCGTTTGATATTA 659
||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 616 CATTGGGCAGCCTGATTCCAGAAACATGCTTGTTTCGGCCATTGATCGCGTTTGATATTA 675
Query 660 TGTAATGATTTCGAGGTCAATATCG---G-TCTACGCATATATAATAAGGACCTCGATAT 715
||||||||||| ||||||||||||| | ||||| | | ||||||| |||| | ||||
Sbjct 676 TGTAATGATTTTGAGGTCAATATCGATCGGTCTACATAAAAATAATAAAGACCGCTATAT 735
Query 716 ATGT---GTAGAG--ATAT--GTTTCGTATCAATAAGGA 747
|||| || ||| |||| ||||||||||||||||||
Sbjct 736 ATGTATTGTCGAGGGATATATGTTTCGTATCAATAAGGA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5