BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477742
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protei... 1679 0.0
AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional re... 80.5 3e-14
> AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protein
16 | chr3:1288612-1290602 REVERSE LENGTH=1279
Length=1279
Score = 1679 bits (909), Expect = 0.0
Identities = 1053/1119 (94%), Gaps = 24/1119 (2%)
Strand=Plus/Plus
Query 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACAT-CCGctctctctctctctctcCAGA 59
||||||||||||||||||||||||||||||||||| || || ||||||||||||| || |
Sbjct 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACATCCCCCTATCTCTCTCTCTCTTCAAA 60
Query 60 CAATTTAGTT-CCC-AAAAGA-A-C----Taa--aaaa-aaaaaCCCTAGAAGCCGAAGA 108
| ||||||| ||| |||| | | | || |||| |||||||||||||||||||||
Sbjct 61 CGTTTTAGTTCCCCAAAAAAATATCAAAAGAACTAAAAGAAAAACCCTAGAAGCCGAAGA 120
Query 109 ATTTACTACTCG-T-T-G-TCGGATCACCGAACTTATTACTCGTTGAGAATCATTATATC 164
|| | ||||||| | | | |||||||||| |||| |||||||||||| ||||||||||||
Sbjct 121 ATCTCCTACTCGTTGTCGATCGGATCACCTAACTAATTACTCGTTGATAATCATTATATC 180
Query 165 AAAAAATATGATTAATTTCGAGGCGACGGAGCTGAGGTTAGGGCTGCCGGGTGGTAATCA 224
| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||
Sbjct 181 GAGAAATATGATTAATTTTGAGGCCACGGAGCTGAGATTAGGGCTACCGGGTGGGAATCA 240
Query 225 CGGAGGAGAAATGGTC-GGAAAAAATAATGGCAAAAGAGGATTTTCTGAGACCGTTGATC 283
|||||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 241 CGGAGGAGAAATGG-CTGGAAAAAATAATGGTAAAAGAGGATTTTCTGAGACTGTTGATC 299
Query 284 TCAAACTGAATCTTTCATCAACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 343
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCAAACTGAATCTTTCATCGACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 359
Query 344 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 419
Query 404 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGTAG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAG 479
Query 464 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCATCCGTATGTGCCGCCG 523
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 480 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCCTCCGCATGTGCCACCG 539
Query 524 TCGCTTACGTGAAGGTTAGCATGGATGGCGCACCGTACCTACGGAAAATTGACTTGAAAC 583
| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 540 TGGCTTATGTGAAGGTTAGCATGGACGGTGCACCGTACCTACGGAAAATTGACTTGAAAC 599
Query 584 TCTACAAAACTTACCAAGATCTATCCGACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 643
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 600 TCTACAAAACTTACCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 659
Query 644 TAGGCACCTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 703
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TAGGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 719
Query 704 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 779
Query 764 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 839
Query 824 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 899
Query 884 TTCTCGACGACATTTCTTGTTCTTACCTAAAAAAGGAAGAAAGACTGTTTCGATCGGTTG 943
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 900 TTCTCGACGACATTTCGTGTTCTTACCTAAAAAAGGAAGAAAGCCTGTTTCGATCGGTTG 959
Query 944 GATATCTCGAACCGAGAAAAGCCAAACCGGCTCGAAACTACTGTTCCGAGCAAGGAGTTT 1003
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 960 GATATCTCGAACCGAGAAA-GCTAAACCGGCTCGAAACTATTGTTCCGAGCAAGGAGTTT 1018
Query 1004 GCttataatattaattaataataatattaatattgtgatgtattacattt-aaaaatttt 1062
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 1019 GCTTATAATATTAATTAATAATAATATTAATATTGTGGTGTATTACATTTTAAAAAATT- 1077
Query 1063 aaaCCGTTTTTGTTATATGTATTATGTA--TAT-TTAAT 1098
||| ||||||||||||||||||||| || ||| |||||
Sbjct 1078 AAATCGTTTTTGTTATATGTATTATATACATATATTAAT 1116
> AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional
regulator family protein | chr1:1136258-1138613 FORWARD LENGTH=1087
Length=1087
Score = 80.5 bits (43), Expect = 3e-14
Identities = 70/82 (85%), Gaps = 5/82 (6%)
Strand=Plus/Plus
Query 361 AAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAA 419
||||| || |||||||||||||||||||||||||||||||| | |||| | ||| |||||
Sbjct 350 AAACCTCCGGCCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAA 408
Query 420 CGTCATG-T--CCGGCCAAAAA 438
||| ||| | || ||||||||
Sbjct 409 CGTGATGGTTTCCTGCCAAAAA 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5