BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477744
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3169 0.0
> AT3G04750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1301391-1303376 REVERSE LENGTH=1986
Length=1986
Score = 3169 bits (1716), Expect = 0.0
Identities = 1895/1981 (96%), Gaps = 13/1981 (1%)
Strand=Plus/Plus
Query 1 ATGTGC-TT-TG-TGTTGTTGCGGCGAGGAATTCGATTGTTTGGCACAGAATGTGGGAGC 57
|||||| || || ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1 ATGTGCTTTGTGTTGTTGTTGCGGCGAGGATTTCGATTATTTGGCACAGAATGTGGGAGC 60
Query 58 AAGACAA-CAACATGGGATCCTGTTCAATCACTTCAGCTGAATCATCAATCTCTTGTCTT 116
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGACAACCAA-ATGGGATCCTGTTCAATCACTTCAGCTGAATCATCAATCTCTTGTCTT 119
Query 117 GCTCGAGAAATGCAGTTCCAGGAATCAATTCAAGCAGGTTTTGGCACAGATCATGCGTTT 176
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTCGAGAATTGCAATTCCAGGAATCAATTCAAGCAGGTTTTGGCACAGATCATGCGTTT 179
Query 177 CAATCTCATCGGCGTTACGTTTCCCATGAGCCGTCTTATCTTCTTCTCGGCGATCACATA 236
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAATCTCATCTGCGATACGTTTCCCATGAGCCGTCTTATCTTCTTCTCGGCGATCACATA 239
Query 237 CCCAGAGAATCTCGACTTGGCGAAGCTTCTGTTTCTTAATTTCACTCCGAATCCGAATGT 296
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 240 CCCAGAGAATCTCGACTTGGCGAAGCTTCTATTTCTTAATTTCACTCCCAACCCGAATGT 299
Query 297 TTTTGTTTACAACACAATGATCTCTGCTGTTTCGAGCTCCAAAAATGAATGCTTTGGTCT 356
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TTTTGTTTACAACACAATGATATCTGCTGTTTCGAGCTCGAAAAATGAATGCTTTGGTCT 359
Query 357 GTATAGTTCTATGATTAGGTACCGTGTTTCTCCGGACAGGCAAACGTTTCTCCATCTCAT 416
||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||
Sbjct 360 GTATAGTTCTATGATTAGGCACCGTGTCTCTCCTGACAGGCAAACGTTTCTCTATCTCAT 419
Query 417 GAAAGCTTCGAGTTTTCTGTCGGAAGTGAAGCAGATCCATTGTCATATCATTGTTTCTGG 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GAAAGCTTCGAGTTTTCTGTCGGAAGTGAAGCAGATCCATTGCCATATCATTGTTTCTGG 479
Query 477 GTGTTTGTCTCTTGGGAATTACCTGTGGAATTCTCTGGTTAAGTTTTACATGGAGTTGGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTGTTTGTCTCTTGGGAATTACCTGTGGAATTCTCTGGTTAAGTTTTACATGGAGTTGGG 539
Query 537 AAGTTTGGGTTTTGCCGAGAAGGTGTTTGCTATAATGCCTCAACCAGATGTCAGCTCTTT 596
|| ||| ||| |||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 540 AAATTTTGGTGTTGCAGAGAAGGTGTTTGCTAGAATGCCTCATCCAGATGTCAGCTCTTT 599
Query 597 TAACGTTATGATTGTTGGTTATGCGAAGCAGGGGTTTGGTTTAGAGGCACTGGAACTGTA 656
|||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||
Sbjct 600 TAACGTTATGATTGTTGGTTATGCTAAGCAGGGTTTTAGTTTAGAGGCACTTAAACTGTA 659
Query 657 TTATAAGATGGTTAGTGATGGTATTGAACCTGATGAGTACACAGTGCTGGGTCTTCTACT 716
|| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 660 TTTTAAGATGGTTAGTGATGGTATTGAACCTGATGAGTACACTGTGCTGAGTCTTCTTGT 719
Query 717 TTGTTGTGGTCATTTATCAGATATTAGGCTTGGGAAGGGAGTTCATGGTTGGATTGAGAG 776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 TTGTTGTGGTCATTTATCAGATATTAGACTTGGGAAGGGAGTTCATGGTTGGATTGAGAG 779
Query 777 GAGAGGACCTGTTTATTCATCTAATTTGATTCTGAGCAATGCTCTTTTGGACATGTATTT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGAGGACCTGTTTATTCATCTAATTTGATTCTGAGCAATGCTCTTTTGGACATGTATTT 839
Query 837 CAAATGCAAAGAATCCGGACTTGCTAAAAGAGCTTTTGATGCGATGCAGAAGAAAGACAT 896
||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 840 CAAATGCAAAGAATCTGGTCTTGCTAAAAGAGCTTTTGATGCGATGAAGAAGAAAGACAT 899
Query 897 GCGCTCTTGGAACACCATGGTTGTTGGGTTTGTTAGGCTTGGGGACATGGAAGCTGCTCA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCGCTCTTGGAACACCATGGTTGTTGGGTTTGTTAGGCTTGGGGACATGGAAGCTGCTCA 959
Query 957 GTCTGTTTTTGATCAGATGCCCCAACGGGATCTTGTTTCTTGGAATTCTCTGCTTTTTTG 1016
| |||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
Sbjct 960 GGCTGTTTTTGATCAGATGCCCAAAAGGGATCTTGTTTCTTGGAACTCTCTTCTTTTTGG 1019
Query 1017 TTACTCGAAGAAGGGATGTGACCAAAGAGCCGTCAGAGAATTGTTCTATGAAATG-CTGA 1075
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 1020 TTATTCGAAGAAGGGATGTGACCAAAGAACCGTCAGAGAATTGTTCTATGAAATGAC-GA 1078
Query 1076 TCGTGGAGAAGGTCAAGCCAGACCGCGTCACTATGGTTAGTTTGATAAGTGGTGCAGCAA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCGTGGAGAAGGTCAAGCCAGACCGCGTCACTATGGTTAGTTTGATAAGTGGTGCAGCAA 1138
Query 1136 ACAACGGAGAACTGAGCCATGGAAGATGGGTGCACGGATTAGTGATCCGTCTGCAACTGG 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACAACGGAGAACTGAGCCATGGAAGATGGGTGCACGGATTAGTGATCCGTCTGCAACTGA 1198
Query 1196 AAGGTGATGCCTTTCTGAGTTCGGCTCTGATAGATATGTACTGCAAATGTGGTCTCATTG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1199 AAGGTGATGCCTTTCTGAGTTCGGCTCTGATAGATATGTACTGCAAATGTGGTATCATTG 1258
Query 1256 AGCGGGCTTTCATGGTTTTCAAGACAGCTACTGAGAAAGATGTTC-CGCTATGGACATCA 1314
|||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1259 AGCGGGCTTTTATGGTTTTCAAGACAGCTACCGAGAAAGATGT-CGCGCTATGGACATCA 1317
Query 1315 ATGATAACTGGGTTGGCCTTCCATGGAAATGGCCAGCAAGCTCTGCAGCTATTCAAAAGA 1374
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1318 ATGATAACTGGGTTGGCCTTCCACGGAAATGGCCAGCAAGCTCTGCAGCTATTCGGAAGA 1377
Query 1375 ATGCAAGAAGAAGATGTGACGCCAAACAAAGTCACTCTGCTCGCTGTCCTGACAGCTTGC 1434
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1378 ATGCAAGAAGAAGGTGTGACGCCAAACAATGTCACTCTGCTCGCTGTCCTGACAGCTTGC 1437
Query 1435 AGTCACAGCGGACTTGTGGAGGAAGGGCTTCACGTTTTCTACCACATGAAGGAAAAATTC 1494
||||| |||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 1438 AGTCATAGCGGACTCGTGGAGGAAGGGCTACACGTTTTCAACCACATGAAGGATAAATTC 1497
Query 1495 GGCTTTCACCCTGAAACCGAGTATTACGGAAGCCTTGTGGATCTGTTGTGTAGGGCAGGG 1554
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGCTTTGACCCTGAAACTGAGCATTACGGAAGCCTTGTGGATCTGTTGTGTAGGGCAGGG 1557
Query 1555 AGAGTAGAGGAAGCGAAAGACATAGTGCAAAAGAAGATGCCAATGAGACCAAGTCAGTCA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AGAGTAGAGGAAGCGAAAGACATAGTGCAAAAGAAGATGCCAATGAGACCAAGTCAGTCA 1617
Query 1615 ATGTGGGGATCAATTTTAAGTGCTTGTCGGGGAGGTGAAGACATTGAAACCGCAGAGTTG 1674
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 ATGTGGGGATCAATCTTAAGTGCTTGTCGGGGAGGTGAAGACATTGAAACCGCAGAGTTG 1677
Query 1675 GCTTTATCGGAATTGCTTAAGTTGGAACCTGAAAAAGAAGGCGGATACGTTTTGTTGTCT 1734
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GCTTTAACTGAATTGCTTAAGTTGGAACCTGAAAAAGAAGGCGGATACGTTTTGTTGTCT 1737
Query 1735 AATATATATGCAACCGTTGGAAGATGGGGATATTCAGACAAGACGAGAGAAGCAATGGAG 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 AATATATATGCAACCGTTGGAAGATGGGGATATTCAGACAAGACGAGAGAAGCAATGGAG 1797
Query 1795 AGTAGCGGAGTAAAGAAGACTGCAGGATATAGTAGTGTAGTTGGAGTAGAGGGAGTTCAT 1854
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1798 AATCGCGGAGTAAAGAAGACTGCAGGATATAGTAGTGTAGTTGGAGTAGAGGGACTTCAT 1857
Query 1855 AGCTTTGTGGCTGCAGAGAAGCAGAACCATCCAAGATGGACGGAGATAAAAAGAATATTG 1914
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1858 AGGTTTGTGGCTGCAGAGAAGCAAAACCATCCAAGATGGACGGAGATAAAAAGAATATTG 1917
Query 1915 CAGCATCTGCATAACGAAATGAAGTCAAAAATTGGATCGTT-GGACTTGTTAGGAACATA 1973
||||||||| |||| ||||||||| ||||| |||||| ||| ||||||||||| || |||
Sbjct 1918 CAGCATCTGTATAATGAAATGAAGCCAAAA-TTGGATTGTTTGGACTTGTTAG-AA-ATA 1974
Query 1974 G 1974
|
Sbjct 1975 G 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97790661660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5