BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477746
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04770.1 | Symbols: RPSAb | 40s ribosomal protein SA B | chr... 1338 0.0
> AT3G04770.1 | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309294-1310887
REVERSE LENGTH=1211
Length=1211
Score = 1338 bits (724), Expect = 0.0
Identities = 916/1003 (91%), Gaps = 35/1003 (3%)
Strand=Plus/Plus
Query 1 Cgagagaagagaaagaaacagagag-aagaa-gaaaaTGGCGGCGAATGGAGGAGCTACG 58
||| ||||||||||||||||||| | || || ||||||||||||||| |||| ||| |||
Sbjct 6 CGAAAGAAGAGAAAGAAACAGAGCGAAAAAACGAAAATGGCGGCGAACGGAGTAGCGACG 65
Query 59 GCGGCTGGTCAGGTGTCAGAGAAAGAAGCTGATATCCAGATGATGTTATCAGCCGATGTT 118
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GCGGGACGTCAGGTATCAGAGAAAGAAGCTGATATCCAGATGATGTTATCAGCCGATGTT 125
Query 119 CACCTTGGTACCAAAAATTGCAATTATCAGATGGAGCGTTATGTCTTCAAAAGACGCAAC 178
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 126 CACCTTGGTACCAAAAACTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGAC 185
Query 179 GACGGTATTTACATTATCAATCTTGGAAAGACATGGGATAAGCTTCAGATGGCTGCTAGG 238
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 186 GACGGTATTTACATAATCAATCTTGGAAAGACATGGGACAAGCTTCAGATGGCTGCTAGG 245
Query 239 GTAATTGTAGCAATCGAAAACCCTAAAGACATAATTGTTCAATCAGCTAGGCCTTATGGG 298
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 246 GTTATTGTAGCAATCGAAAACCCAAAAGACATAATTGTTCAATCAGCCAGGCCTTATGGA 305
Query 299 CAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGCTAATGCAATTGCTGGAAGACAC 358
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 306 CAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGAAGACAC 365
Query 359 ACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCCAGGTTGTTGATT 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 366 ACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATT 425
Query 419 CTCACCGACCCAAGAACCGACCATCAGCCAATCAAGGAAGGTGCGTTGGGAAACATTCCG 478
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 426 CTCACCGACCCAAGAACCGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCA 485
Query 479 ACAATCGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCT 538
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ACTATTGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCT 545
Query 539 AACAACAAGGGAAAACACAGCATTGGTTGCCTGTTCTGGCTTTTGGCTCGTATGGTTCTG 598
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 546 AACAACAAGGGAAAACACAGCATTGGTTGCTTGTTCTGGCTTTTGGCTCGTATGGTTCTC 605
Query 599 CAAATGCGTGGGACCATTCTC-CGAGCTCAGAAATGGGATGTCATGGTAAAGTCTAGAAA 657
||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 606 CAAATGCGTGGAACCATTCTCGC-AGCTCAGAAATGGGATGTCATGGTAAACTCTAGAAA 664
Query 658 CACTTATCACT-CTA-TGTTTCTCCAACACCaaaaaaaaGATGTTGACTTGTTTGTGTTG 715
||| |||| || |||||||||||||||| | ||| ||| ||||||||||| |||||
Sbjct 665 TACT-ATCAGGACTTGTGTTTCTCCAACACCAGACAAA-GATCTTGACTTGTTTCTGTTG 722
Query 716 TGTAGGTGGATCTGTTTTTCTACAGGGAGCCTGAAGAAGCAAAGCAAGAAG---ATGA-- 770
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 723 TGTAGGTGGATCTGTTTTTCTACAGGGAGCCCGAAGAAGCAAAGCAAGAGGGTGATGAAG 782
Query 771 ----TGAAG-A-A------T-ATGGAATGGTTGGTGGTGACCAGTGGACCACTGCTCAAA 817
||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 783 AAGCTGAAGTACAGGCCGATTATGGAATGGTTGGTGGTGACCAGTGGACCACTGCTCAAA 842
Query 818 TCCCTGATGCTGCATGGCCTGGTGAACCCGAACAGCCGATTTCTGCTGCACCTGCAGTTG 877
| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 843 TATCTGATGCTGCATGGTCTGGTGAAGTCGAACAGCCAATTTCTGCTGCACCTGCAGTTG 902
Query 878 GCGGTTAGTTTCTTGTTGCTGCTGGATGGGACACTGCTTCTGTTCCAGCTGCTGGTTGGG 937
||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 903 GCG-TTAC---C--GTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGG 956
Query 938 AGTAAAAGTTCCCTTCATTTTAGTTTAGCTCGAATTCGGTTAG 980
|||||||| || ||| ||| ||||||||||||| ||||||||
Sbjct 957 AGTAAAAGCTCTCTT-ATT--AGTTTAGCTCGAACTCGGTTAG 996
Score = 113 bits (61), Expect = 3e-24
Identities = 83/93 (89%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 992 GACCATTAGCATTAGGTGCATTTTTGCCGGTATTTCCAAGTTTCAACCGTATAAGGGTAT 1051
|||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1083 GACCATGAG-ATTAGGTGCATTTTTGCCGGTATTTCCAAGTTTCAACCATATAACGGTAT 1141
Query 1052 TTCATCTTT-AGTTATTTCATTGAATTGACCAT 1083
|| ||| || | || |||||||||||||| |||
Sbjct 1142 TTTATCGTTGA-TTCTTTCATTGAATTGAACAT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5