BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477747 Length=741 Score E Sequences producing significant alignments: (Bits) Value AT3G04780.1 | Symbols: | Protein of unknown function (DUF1000)... 1168 0.0 > AT3G04780.1 | Symbols: | Protein of unknown function (DUF1000) | chr3:1311247-1313090 REVERSE LENGTH=808 Length=808 Score = 1168 bits (632), Expect = 0.0 Identities = 708/743 (95%), Gaps = 12/743 (2%) Strand=Plus/Plus Query 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAGaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAG-- 58 Query 61 aaaaaaaaaaaaaCTCACGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 AAAAAAAAAAAAACTCGCGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 118 Query 121 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGCCTTAACCAAAGCTCAAGTCA 180 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 119 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGTCTTAACCAAAGCTCAAGTCA 178 Query 181 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 238 Query 241 TGATGCTGATGAACAACTTCTGATCTATATTCCTTTTAACCAAGTTATCAAATTACATTC 300 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 239 TGATGCTGATGAACAACTTCTCATCTATATTCCTTTTAACCAAGTTATCAAACTACATTC 298 Query 301 TTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 358 Query 361 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCTAGCGACACCGCTGAACTAAC 420 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 359 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCAAGCGACACCGCTGAACTAAC 418 Query 421 TGAAGAAAACCTCAAGGGAAAACCGGTGGTCCTTAAA-TACGTCAAGTTTCAGAATGTTC 479 |||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 419 TGAAGAAAACCTTAAGGGAAAACCGGTGGTCCT-AAAGTACGTAAAGTTTCAGAATGTTC 477 Query 480 GTAGCTTGACGATCTTCATCGAAGACAACCAATCAGGTTCTGAGGTCACCAAGGTTCGGA 539 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 478 GTAGCTTGACGATCTTCATCGAAGCCAACCAATCAGGTTCTGAGGTCACCAAGGTTCAGA 537 Query 540 AGATTGCTCTCTATGGCTCAACGGTGGAGACTACTGATATGAAGGGATTGAAAAAGATTG 599 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 538 AGATTGCTCTCTATGGCTCAACGGTGGAGACGACTGATATGAAGGGATTGAAAAAGATTG 597 Query 600 AAGATCACTGAGCAAACAAAAGTGTTTTAAACATATGATCATATATCACTTTGATTTCTG 659 |||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| Sbjct 598 AAGATCACTGAGCATACAAAAGTGTTTTAATCATATGATCGTATATCAGTTTGATTTCTA 657 Query 660 GTGTTCTATCGCGCTTT-ATCGTTCGTTTTTCACTGACTTTTTAAAGTTATTGGATTAAA 718 ||||||||| ||| ||| |||||| |||||| ||| ||||||| || | | |||||| Sbjct 658 GTGTTCTATTGCG-TTTCATCGTTTGTTTTTTACTTACTTTTT----TT-T-GAATTAAA 710 Query 719 ATAGACCTGAACTTGTGCTTGCC 741 ||||||| ||||||||| ||||| Sbjct 711 ATAGACCAGAACTTGTGATTGCC 733 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35967649252 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5