BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477747

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04780.1 | Symbols:  | Protein of unknown function (DUF1000)...  1168    0.0  


> AT3G04780.1 | Symbols:  | Protein of unknown function (DUF1000) 
| chr3:1311247-1313090 REVERSE LENGTH=808
Length=808

 Score = 1168 bits (632),  Expect = 0.0
 Identities = 708/743 (95%), Gaps = 12/743 (2%)
 Strand=Plus/Plus

Query  1    GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAGaa  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  1    GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAG--  58

Query  61   aaaaaaaaaaaaaCTCACGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT  120
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   AAAAAAAAAAAAACTCGCGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT  118

Query  121  TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGCCTTAACCAAAGCTCAAGTCA  180
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  119  TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGTCTTAACCAAAGCTCAAGTCA  178

Query  181  CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG  238

Query  241  TGATGCTGATGAACAACTTCTGATCTATATTCCTTTTAACCAAGTTATCAAATTACATTC  300
            ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct  239  TGATGCTGATGAACAACTTCTCATCTATATTCCTTTTAACCAAGTTATCAAACTACATTC  298

Query  301  TTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA  360
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  CTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA  358

Query  361  AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCTAGCGACACCGCTGAACTAAC  420
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  359  AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCAAGCGACACCGCTGAACTAAC  418

Query  421  TGAAGAAAACCTCAAGGGAAAACCGGTGGTCCTTAAA-TACGTCAAGTTTCAGAATGTTC  479
            |||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct  419  TGAAGAAAACCTTAAGGGAAAACCGGTGGTCCT-AAAGTACGTAAAGTTTCAGAATGTTC  477

Query  480  GTAGCTTGACGATCTTCATCGAAGACAACCAATCAGGTTCTGAGGTCACCAAGGTTCGGA  539
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  478  GTAGCTTGACGATCTTCATCGAAGCCAACCAATCAGGTTCTGAGGTCACCAAGGTTCAGA  537

Query  540  AGATTGCTCTCTATGGCTCAACGGTGGAGACTACTGATATGAAGGGATTGAAAAAGATTG  599
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  538  AGATTGCTCTCTATGGCTCAACGGTGGAGACGACTGATATGAAGGGATTGAAAAAGATTG  597

Query  600  AAGATCACTGAGCAAACAAAAGTGTTTTAAACATATGATCATATATCACTTTGATTTCTG  659
            |||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| 
Sbjct  598  AAGATCACTGAGCATACAAAAGTGTTTTAATCATATGATCGTATATCAGTTTGATTTCTA  657

Query  660  GTGTTCTATCGCGCTTT-ATCGTTCGTTTTTCACTGACTTTTTAAAGTTATTGGATTAAA  718
            ||||||||| ||| ||| |||||| |||||| ||| |||||||    || | | ||||||
Sbjct  658  GTGTTCTATTGCG-TTTCATCGTTTGTTTTTTACTTACTTTTT----TT-T-GAATTAAA  710

Query  719  ATAGACCTGAACTTGTGCTTGCC  741
            ||||||| ||||||||| |||||
Sbjct  711  ATAGACCAGAACTTGTGATTGCC  733



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35967649252


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5