BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477747
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04780.1 | Symbols: | Protein of unknown function (DUF1000)... 1168 0.0
> AT3G04780.1 | Symbols: | Protein of unknown function (DUF1000)
| chr3:1311247-1313090 REVERSE LENGTH=808
Length=808
Score = 1168 bits (632), Expect = 0.0
Identities = 708/743 (95%), Gaps = 12/743 (2%)
Strand=Plus/Plus
Query 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAGaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAG-- 58
Query 61 aaaaaaaaaaaaaCTCACGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AAAAAAAAAAAAACTCGCGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 118
Query 121 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGCCTTAACCAAAGCTCAAGTCA 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGTCTTAACCAAAGCTCAAGTCA 178
Query 181 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 238
Query 241 TGATGCTGATGAACAACTTCTGATCTATATTCCTTTTAACCAAGTTATCAAATTACATTC 300
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 239 TGATGCTGATGAACAACTTCTCATCTATATTCCTTTTAACCAAGTTATCAAACTACATTC 298
Query 301 TTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 358
Query 361 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCTAGCGACACCGCTGAACTAAC 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCAAGCGACACCGCTGAACTAAC 418
Query 421 TGAAGAAAACCTCAAGGGAAAACCGGTGGTCCTTAAA-TACGTCAAGTTTCAGAATGTTC 479
|||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 419 TGAAGAAAACCTTAAGGGAAAACCGGTGGTCCT-AAAGTACGTAAAGTTTCAGAATGTTC 477
Query 480 GTAGCTTGACGATCTTCATCGAAGACAACCAATCAGGTTCTGAGGTCACCAAGGTTCGGA 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 478 GTAGCTTGACGATCTTCATCGAAGCCAACCAATCAGGTTCTGAGGTCACCAAGGTTCAGA 537
Query 540 AGATTGCTCTCTATGGCTCAACGGTGGAGACTACTGATATGAAGGGATTGAAAAAGATTG 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 AGATTGCTCTCTATGGCTCAACGGTGGAGACGACTGATATGAAGGGATTGAAAAAGATTG 597
Query 600 AAGATCACTGAGCAAACAAAAGTGTTTTAAACATATGATCATATATCACTTTGATTTCTG 659
|||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 598 AAGATCACTGAGCATACAAAAGTGTTTTAATCATATGATCGTATATCAGTTTGATTTCTA 657
Query 660 GTGTTCTATCGCGCTTT-ATCGTTCGTTTTTCACTGACTTTTTAAAGTTATTGGATTAAA 718
||||||||| ||| ||| |||||| |||||| ||| ||||||| || | | ||||||
Sbjct 658 GTGTTCTATTGCG-TTTCATCGTTTGTTTTTTACTTACTTTTT----TT-T-GAATTAAA 710
Query 719 ATAGACCTGAACTTGTGCTTGCC 741
||||||| ||||||||| |||||
Sbjct 711 ATAGACCAGAACTTGTGATTGCC 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5