BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477752 Length=2302 Score E Sequences producing significant alignments: (Bits) Value AT3G04820.1 | Symbols: | Pseudouridine synthase family protein... 3365 0.0 > AT3G04820.1 | Symbols: | Pseudouridine synthase family protein | chr3:1321228-1325953 REVERSE LENGTH=2377 Length=2377 Score = 3365 bits (1822), Expect = 0.0 Identities = 2055/2164 (95%), Gaps = 29/2164 (1%) Strand=Plus/Plus Query 1 GGCAATGAAATTAAGTAGAACTGTGTTGTCTTCTTTGCCGTCTCTGCTAAAACCCTACTC 60 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1 GGCAATGAAATTAAGTAGAACTGTCTTGTCTTGTTTGCCGTCTCTGCTAAAACCCTACTC 60 Query 61 GAGCTTGAGCTGGACTACTACAATAGCGACGACAGCTA-AAACCTTTGAAGGTATGACAA 119 ||||||||||||||| || | ||||||||||| ||||| ||| |||||||||||||| || Sbjct 61 GAGCTTGAGCTGGACAACGAAAATAGCGACGATAGCTACAAA-CTTTGAAGGTATGAAAA 119 Query 120 CTGTAGATGAAGCTGACGTGGGCATCTCCTGTTTCATCTCCCAGCTCCCTGGCTTCCGTG 179 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 120 CAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTG 179 Query 180 GAATTCTCAAACAAAGGTCATACGCAGACTTTATTGTTAATGAAGTGGATATCGATGGTA 239 |||| |||||||||| | ||||||||||||||||||||||||||| ||||| ||||||| Sbjct 180 GAATCCTCAAACAAA-G--ATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTA 236 Query 240 ATGTGGTTCATTTGACATCCTTGGACTTACCTCCTGAGATGGATGTGAAGGAGGAAGATA 299 |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| Sbjct 237 ATGTGGTTCATTTGACATCCTTGGACTTGCCTCCTGAGATGGCTGTGAAGGAGGAGGATA 296 Query 300 AAACGAAAACTTCTGATAATGTACCTCAAAACTATACTTCGGCAATTGAGTCTTTCAGAT 359 || |||||| || |||||||||||| ||||| |||||||| ||| |||||||||||| || Sbjct 297 AAGCGAAAAGTTGTGATAATGTACCCCAAAATTATACTTCTGCAGTTGAGTCTTTCAAAT 356 Query 360 CAATTTCCAGTGTCACTGATGCAGAGCGTTTGGAAACATTGATCAATCAAGTCACCTCAG 419 | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 357 CTATTTCCAGTGTTACTGATGCAGAGCGTTTGGAAATATTGATCAATCAAGTCACCTCAG 416 Query 420 GAACTGATGATGAAATCTCACCACTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 479 ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 417 GAACTGATGGTGAAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 476 Query 480 CGGCTATCCACAACTTTGTTAAAGAGAATTTTAAGTTCCTAGTGACTGACACTGTCGATG 539 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 477 CGGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACG 536 Query 540 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCAAGTGAATTCAGGAGCCCATAACAACA 599 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 537 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATTCAGGAGCCAATAACAACA 596 Query 600 GAGGTAATAGATCaaaaaaaCGCAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 659 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 597 GAGGTAATAGATCAAAAAAACGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 656 Query 660 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 716 Query 720 AAGATACACAAGAGGCCTTGGGATTGATCGGAAAGATGCTAGGCGTTCAGCCAAAGTCCT 779 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 717 AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGCCAAAGTCAT 776 Query 780 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTCTCAACTCAGCGTGTAACTGTGTTCA 839 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 777 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTGTAACTGTGTTCA 836 Query 840 AACAGCAAGCCAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 899 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 AACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 896 Query 900 ACTTCTGCCATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACCA 959 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 897 ACTTCTGCAATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACTA 956 Query 960 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATaaaaaaaTCTGCAGAATCCT 1019 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 957 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAACAATCTGCAGAATCCT 1016 Query 1020 TGGGGAAAGATGGCTTCATCAACTACTTTGGTTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1079 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1017 TGGGGAAAGATGGCTTCATCAACTACTTTGGCTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1076 Query 1080 CAACCCACCATGTTGGAGCTGCACTATTGAAGGGAGAGTGGAAAGATGCCG-A-A--TG- 1134 ||||||||||||| ||||||||||||||||| ||||||||||||||||| | | | || Sbjct 1077 CAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGA 1136 Query 1135 --CA-G--C-AAT-GCA--TG---G-CATGTAGTAAATGATGCCCGGGAATATTACAAAG 1181 | | | || | | || | |||||||||||||||||||||||||||||||||| Sbjct 1137 TTCTTGATCCAAGAGAAACTGAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAG 1196 Query 1182 AAACTGGCGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1241 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 AAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1256 Query 1242 CCATACTGCAGTGTCTGAAGAAATGTCCTGGTAACTACCTGCAGGCTCTGAAAGGCATTC 1301 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1257 CCATACTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGCATTC 1316 Query 1302 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1376 Query 1362 CAAGTCTGCGCGTCACAAAAT-ATGAGA-CAAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1419 ||||||||||||||| ||||| ||| || | ||||||||||||||||||||||||||||| Sbjct 1377 CAAGTCTGCGCGTCA-AAAATTATG-GAACCAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1434 Query 1420 TACAAAGGTAGATGCTGAAAAAAGAATGGTTGACAGTCTTACCTCTGAGCACAACGAAAG 1479 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1435 TACAAAGGTAGATGCTGCAAAAAGAATGGTCGACAGTCTTACCTCTGAGCACAACGAAAG 1494 Query 1480 CAGCGAAGAGGCATTGGATTGTGACCACGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1539 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1495 CAGCGAAGAGGCATTGGATTGTGACCAGGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1554 Query 1540 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTT 1599 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTC 1614 Query 1600 AACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTTATTTACCCATCTAATGACAT 1659 |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 1615 GACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTCATCTACCCGTCTAATGACAT 1674 Query 1660 TGCGGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1719 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1675 TGCAGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1734 Query 1720 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1735 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1794 Query 1780 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1795 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1854 Query 1840 GACGGATCTGGACAGGATAACCGTGAACAAGCCGGTGGATAAAGTTGGATCTGCGGAGGA 1899 ||||||||||||||||||| || |||||||||||||||| |||||||||||| | ||||| Sbjct 1855 GACGGATCTGGACAGGATACCCATGAACAAGCCGGTGGAGAAAGTTGGATCTACTGAGGA 1914 Query 1900 AATTGAAGATGAACCGTTGAAATCTGATACTAACCCACATGAATCATG-TGAAACCAATT 1958 ||||||||||||| | ||||||||||||||||||||||||| || || ||||||||||| Sbjct 1915 AATTGAAGATGAATCAATGAAATCTGATACTAACCCACATGATTC-TGGTGAAACCAATT 1973 Query 1959 TGAAGGACCAGATAGATAGCAAAGAGGATGAAAAAGACACTAGAAATCCAGATTCTGAGC 2018 |||| ||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||| Sbjct 1974 TGAAAGACCAGACAGATAGCAATGAGGCTGAAAAAGACACTGGAAATCCAGATTCTGAGC 2033 Query 2019 AAACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2078 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2034 AGACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2093 Query 2079 CAATCAGAGAACTGTTAAAGACGTCAACATCTGTTGCATATCACAAGACACTTAACTAGT 2138 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2094 CAATCAGAGAACTATTAAAGACGTCAACTTCTGTTGCATATCACAAGACACTTAACTAGT 2153 Query 2139 GATT 2142 |||| Sbjct 2154 GATT 2157 Score = 174 bits (94), Expect = 3e-42 Identities = 108/115 (94%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2143 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGCCATTCTATCTTGTCTGCTTT 2202 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 2201 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGTGATTCTATCTTGTCTATTTT 2260 Query 2203 AAACATGTGTGCATTCATGTATTTATGCGGAAGTTCAGGAAGTTTTGTCTGAAAT 2257 |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 2261 AAACATGTGTACATTCATGTATTTGTGCGGAAGTTCAGGAAATTTTGTCTGAAAT 2315 Score = 84.2 bits (45), Expect = 5e-15 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 2255 AATTTTGGTAACCGGCCAAGTTTTTTCTTGAATTTCAATGTATCAGAC 2302 |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2330 AATTTTGGTAACCGGCCAAGTTTTTTCTAGAATTTCAATGTATCAGAC 2377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114256440420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5