BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477752
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04820.1 | Symbols: | Pseudouridine synthase family protein... 3365 0.0
> AT3G04820.1 | Symbols: | Pseudouridine synthase family protein
| chr3:1321228-1325953 REVERSE LENGTH=2377
Length=2377
Score = 3365 bits (1822), Expect = 0.0
Identities = 2055/2164 (95%), Gaps = 29/2164 (1%)
Strand=Plus/Plus
Query 1 GGCAATGAAATTAAGTAGAACTGTGTTGTCTTCTTTGCCGTCTCTGCTAAAACCCTACTC 60
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1 GGCAATGAAATTAAGTAGAACTGTCTTGTCTTGTTTGCCGTCTCTGCTAAAACCCTACTC 60
Query 61 GAGCTTGAGCTGGACTACTACAATAGCGACGACAGCTA-AAACCTTTGAAGGTATGACAA 119
||||||||||||||| || | ||||||||||| ||||| ||| |||||||||||||| ||
Sbjct 61 GAGCTTGAGCTGGACAACGAAAATAGCGACGATAGCTACAAA-CTTTGAAGGTATGAAAA 119
Query 120 CTGTAGATGAAGCTGACGTGGGCATCTCCTGTTTCATCTCCCAGCTCCCTGGCTTCCGTG 179
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 CAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTG 179
Query 180 GAATTCTCAAACAAAGGTCATACGCAGACTTTATTGTTAATGAAGTGGATATCGATGGTA 239
|||| |||||||||| | ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 180 GAATCCTCAAACAAA-G--ATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTA 236
Query 240 ATGTGGTTCATTTGACATCCTTGGACTTACCTCCTGAGATGGATGTGAAGGAGGAAGATA 299
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 237 ATGTGGTTCATTTGACATCCTTGGACTTGCCTCCTGAGATGGCTGTGAAGGAGGAGGATA 296
Query 300 AAACGAAAACTTCTGATAATGTACCTCAAAACTATACTTCGGCAATTGAGTCTTTCAGAT 359
|| |||||| || |||||||||||| ||||| |||||||| ||| |||||||||||| ||
Sbjct 297 AAGCGAAAAGTTGTGATAATGTACCCCAAAATTATACTTCTGCAGTTGAGTCTTTCAAAT 356
Query 360 CAATTTCCAGTGTCACTGATGCAGAGCGTTTGGAAACATTGATCAATCAAGTCACCTCAG 419
| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 357 CTATTTCCAGTGTTACTGATGCAGAGCGTTTGGAAATATTGATCAATCAAGTCACCTCAG 416
Query 420 GAACTGATGATGAAATCTCACCACTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 479
||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 GAACTGATGGTGAAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 476
Query 480 CGGCTATCCACAACTTTGTTAAAGAGAATTTTAAGTTCCTAGTGACTGACACTGTCGATG 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 477 CGGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACG 536
Query 540 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCAAGTGAATTCAGGAGCCCATAACAACA 599
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 537 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATTCAGGAGCCAATAACAACA 596
Query 600 GAGGTAATAGATCaaaaaaaCGCAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 659
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 597 GAGGTAATAGATCAAAAAAACGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 656
Query 660 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 716
Query 720 AAGATACACAAGAGGCCTTGGGATTGATCGGAAAGATGCTAGGCGTTCAGCCAAAGTCCT 779
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 717 AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGCCAAAGTCAT 776
Query 780 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTCTCAACTCAGCGTGTAACTGTGTTCA 839
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 777 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTGTAACTGTGTTCA 836
Query 840 AACAGCAAGCCAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 899
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 896
Query 900 ACTTCTGCCATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACCA 959
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 ACTTCTGCAATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACTA 956
Query 960 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATaaaaaaaTCTGCAGAATCCT 1019
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 957 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAACAATCTGCAGAATCCT 1016
Query 1020 TGGGGAAAGATGGCTTCATCAACTACTTTGGTTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1079
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1017 TGGGGAAAGATGGCTTCATCAACTACTTTGGCTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1076
Query 1080 CAACCCACCATGTTGGAGCTGCACTATTGAAGGGAGAGTGGAAAGATGCCG-A-A--TG- 1134
||||||||||||| ||||||||||||||||| ||||||||||||||||| | | | ||
Sbjct 1077 CAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGA 1136
Query 1135 --CA-G--C-AAT-GCA--TG---G-CATGTAGTAAATGATGCCCGGGAATATTACAAAG 1181
| | | || | | || | ||||||||||||||||||||||||||||||||||
Sbjct 1137 TTCTTGATCCAAGAGAAACTGAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAG 1196
Query 1182 AAACTGGCGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1241
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1256
Query 1242 CCATACTGCAGTGTCTGAAGAAATGTCCTGGTAACTACCTGCAGGCTCTGAAAGGCATTC 1301
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1257 CCATACTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGCATTC 1316
Query 1302 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1376
Query 1362 CAAGTCTGCGCGTCACAAAAT-ATGAGA-CAAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1419
||||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||
Sbjct 1377 CAAGTCTGCGCGTCA-AAAATTATG-GAACCAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1434
Query 1420 TACAAAGGTAGATGCTGAAAAAAGAATGGTTGACAGTCTTACCTCTGAGCACAACGAAAG 1479
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1435 TACAAAGGTAGATGCTGCAAAAAGAATGGTCGACAGTCTTACCTCTGAGCACAACGAAAG 1494
Query 1480 CAGCGAAGAGGCATTGGATTGTGACCACGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1495 CAGCGAAGAGGCATTGGATTGTGACCAGGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1554
Query 1540 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTT 1599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTC 1614
Query 1600 AACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTTATTTACCCATCTAATGACAT 1659
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1615 GACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTCATCTACCCGTCTAATGACAT 1674
Query 1660 TGCGGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TGCAGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1734
Query 1720 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1794
Query 1780 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1854
Query 1840 GACGGATCTGGACAGGATAACCGTGAACAAGCCGGTGGATAAAGTTGGATCTGCGGAGGA 1899
||||||||||||||||||| || |||||||||||||||| |||||||||||| | |||||
Sbjct 1855 GACGGATCTGGACAGGATACCCATGAACAAGCCGGTGGAGAAAGTTGGATCTACTGAGGA 1914
Query 1900 AATTGAAGATGAACCGTTGAAATCTGATACTAACCCACATGAATCATG-TGAAACCAATT 1958
||||||||||||| | ||||||||||||||||||||||||| || || |||||||||||
Sbjct 1915 AATTGAAGATGAATCAATGAAATCTGATACTAACCCACATGATTC-TGGTGAAACCAATT 1973
Query 1959 TGAAGGACCAGATAGATAGCAAAGAGGATGAAAAAGACACTAGAAATCCAGATTCTGAGC 2018
|||| ||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 1974 TGAAAGACCAGACAGATAGCAATGAGGCTGAAAAAGACACTGGAAATCCAGATTCTGAGC 2033
Query 2019 AAACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2078
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 AGACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2093
Query 2079 CAATCAGAGAACTGTTAAAGACGTCAACATCTGTTGCATATCACAAGACACTTAACTAGT 2138
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2094 CAATCAGAGAACTATTAAAGACGTCAACTTCTGTTGCATATCACAAGACACTTAACTAGT 2153
Query 2139 GATT 2142
||||
Sbjct 2154 GATT 2157
Score = 174 bits (94), Expect = 3e-42
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 2143 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGCCATTCTATCTTGTCTGCTTT 2202
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2201 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGTGATTCTATCTTGTCTATTTT 2260
Query 2203 AAACATGTGTGCATTCATGTATTTATGCGGAAGTTCAGGAAGTTTTGTCTGAAAT 2257
|||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2261 AAACATGTGTACATTCATGTATTTGTGCGGAAGTTCAGGAAATTTTGTCTGAAAT 2315
Score = 84.2 bits (45), Expect = 5e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 2255 AATTTTGGTAACCGGCCAAGTTTTTTCTTGAATTTCAATGTATCAGAC 2302
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2330 AATTTTGGTAACCGGCCAAGTTTTTTCTAGAATTTCAATGTATCAGAC 2377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114256440420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5