BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477754
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04830.1 | Symbols: | Protein prenylyltransferase superfami... 1528 0.0
AT5G28220.1 | Symbols: | Protein prenylyltransferase superfami... 861 0.0
> AT3G04830.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr3:1326227-1329364 FORWARD LENGTH=1206
Length=1206
Score = 1528 bits (827), Expect = 0.0
Identities = 897/931 (96%), Gaps = 3/931 (0%)
Strand=Plus/Plus
Query 1 GAGAGAGAGATGGTGACGAAGACGGAGGAGACACAGTTGAACCAACTCGAGAATCAAGTT 60
|||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct 54 GAGAGAGAGATGGTGACGAAAACGGAGGAGATACAGTTAAACCAACTCGAGAATCAAGTT 113
Query 61 GAGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTTGTTCGTAAGCTCAAGATTCGC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 114 GAGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTCGTTCGTAAGCTCAAGGTTCGC 173
Query 121 CGATCAGAGATTGTGCTCAAGCACGGTCTCTCGATCTTGAACGATTCGGGAAAGCGATCT 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 174 CGATCAGAGATTGTGCTCAAGCATGGTCTCTCGATCTTGAACGATTCGGGAAAGCGATCC 233
Query 181 GCTCTTGGTCCAGATGAATGGACACTGTATGAGCAGGTAGCAATTGCAGCTATGGACTGT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 234 GCTCTTGGTCCAGATGAATGGACCCTGTATGAGCAGGTAGCAATTGCAGCTATGGACTGT 293
Query 241 CAATCTCTTGGTGTTGCACAGAATTGCATCAAGGCTT-TGCAGAAGAAATTTCCAGAGAG 299
|||||||| ||||||||||||||||||||||||| || | ||||||||||||| |||||
Sbjct 294 CAATCTCTCGGTGTTGCACAGAATTGCATCAAGG-TTCTAAAGAAGAAATTTCCGGAGAG 352
Query 300 CAAACGTGTTGGCAAGCTGGAGGCTCTGCTGCTAGAAGCAAAGGGAATGTGGGAAGAGGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CAAACGTGTTGGCAAGCTGGAGGCTCTGCTGCTAGAAGCAAAGGGAATGTGGGAAGAGGC 412
Query 360 TGAAAAAGCCTATTCGAGCCTGTTGGAGGATAATCCACTTGATCAAGTAATACACAAAAG 419
||||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 413 TGAAAAAGCATATACAAGCCTTTTGGAGGATAATCCACTTGATCAAGTAATTCACAAAAG 472
Query 420 AAAGGTGGCTATGGCCAAGGCACAGGGCAAACCTTCCTTAGCCATTGAACATCTGAACAA 479
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 473 AAAGGTGGCTATGGCCAAGGCACAAGGCAAATCTTCCTTAGCCATTGAACATCTGAACAA 532
Query 480 ATATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAATTTATGT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GTATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAATTTATGT 592
Query 540 TTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTATGAGGAGCTCATACTAACTCAGCC 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 593 TTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTACGAGGAGCTCATACTAACTCAGCC 652
Query 600 TACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATGGGTGGACTAGA 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 653 TACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATAGGTGGACTAGA 712
Query 660 AAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGGTAAAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGGTAAAAG 772
Query 720 CACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCGATCGCACAGCTGTCAAAAGG 779
||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 773 CACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCAATCGCACAGATCTCAAAAGG 832
Query 780 AAGGAACAAAGAGGACAAGGACATGGCTGCACCAGAGCTTCAGTCTCTGGCTGCAACTGC 839
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 833 CAGGAACAAAGAGGACAAGGACATGGCTGCACCAGAGCTTCAGTCTTTGGCTGCAACTGC 892
Query 840 ATTGGAGAGAGAGTACAAGCAAAAAGCTCCGGCTAAGCTCAACCTCCTCACTTCTGCCTT 899
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 893 ATTGGAGCGAGAGTACAAGCAAAAAGCTCCCGCTAAGCTCAACCTCCTCACTTCTGCCTT 952
Query 900 GAGAAACTTGAAAATCTCTTAGGTTTAAAGC 930
|||||||||||||||| ||||| || |||||
Sbjct 953 GAGAAACTTGAAAATCGCTTAG-TTCAAAGC 982
> AT5G28220.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr5:10190357-10193119 REVERSE LENGTH=1285
Length=1285
Score = 861 bits (466), Expect = 0.0
Identities = 775/923 (84%), Gaps = 25/923 (3%)
Strand=Plus/Plus
Query 3 GAGAGAGATGGTGACGAAGACGGAGGAGACA-CAGTTGAACCAACTCGAGAATCAAGTTG 61
|||||||||||||||||| || ||||||| | || |||||||| || |||| |||||| |
Sbjct 98 GAGAGAGATGGTGACGAAAACAGAGGAGA-AGCAATTGAACCAGCTAGAGATTCAAGTCG 156
Query 62 AGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTTGTTCGTAAGCTC-AAGATTCGC 120
| ||||| ||||| || ||||||||||| ||||| |||||||| ||| ||| |||||
Sbjct 157 ATAATGGCGGAGGCGGAACATGGGAGTATCTTTGCCTCGTTCGTAATCTCAAAG-TTCGC 215
Query 121 CGATCAGAGATTGTGCTCAAGCACGG-TCTCTCGATCTTGAACGATTC-G-GGAAAGCGA 177
|| || |||| ||| | || ||||| || |||||| ||||| || || | |||| |||
Sbjct 216 CGGTCGGAGAAAGTGTTAAAACACGGTTC-CTCGATTTTGAATGA-TCAGAAGAAA-CGA 272
Query 178 TCTGCTCTTGGTCCAGATGAATGGACACTGTATGAGCAGGTAGCAATTGCAGCTATGGAC 237
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 273 TCTGCTCTTGGTCCAGATGAATGGACACTAAATGAGCAGGTGGCAATTGCAGCTATGGAC 332
Query 238 TGTCAATCTCTTGGTGTTGCACAGAATTGCATCAAGGCTTTGCAGA-AGAAATTTCCAGA 296
||||||| ||| ||||| ||||||| |||||| ||||||||||||| | |||||||| |
Sbjct 333 TGTCAATGTCTCGGTGTCGCACAGAGTTGCATTAAGGCTTTGCAGACA-AAATTTCCTGG 391
Query 297 GAGCAAACGTGTTGGCAAGCTGGAGGC-TCTGCTGCTAGAAGCAAAGGGAATGTGGGAAG 355
||||||| | ||||| | ||| ||||| | |||| || ||||| |||||| | |||| ||
Sbjct 392 GAGCAAAAGAGTTGGGAGGCTTGAGGCAT-TGCTTCTTGAAGCGAAGGGATTATGGGGAG 450
Query 356 AGGCTGAAAAAGCCTATTCGAGCCTGTTGGAGGATAATCCACTTGATCAAGTAATACACA 415
||||||| |||| ||| |||| || ||||||||||||||||| || |||| |||||||
Sbjct 451 AGGCTGAGGAAGCATATGCGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACA 510
Query 416 AAAGAA-AGGTGGCTATGGCCAAGGCAC-AGGGCAAACCTTCCTTAGCCATTGAACATCT 473
|| ||| || ||||||| ||||||||| ||| |||||||||| |||||||||| | |||
Sbjct 511 AACGAAGAG-TGGCTATATCCAAGGCACTAGG-CAAACCTTCCATAGCCATTGAGCTTCT 568
Query 474 GAACAAATATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAAT 533
||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 569 TAACAAATATCTTGAACTATTCATGGCTGATCATGATGCATGGAGAGAACTCGCAGAGCT 628
Query 534 TTATGTTTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTATGAGGAGCTCATACTAAC 593
||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 629 TTACCTTTCCTTGCAAATGTATAAGCAAGCAGCTTTCTGCTATGAAGAGCTCATACTATC 688
Query 594 TCAGCCTACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATGGGTGG 653
|||||||||| |||||||||||||| | |||||||| || |||||||| ||||| |||||
Sbjct 689 TCAGCCTACTGTTCCATTGTACCACCTCGCATATGCTGAGGTTCTCTATACAATCGGTGG 748
Query 654 ACTAGAAAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGG 713
| |||||||| | ||| |||||||||| ||||||||||| || |||| || ||||| ||
Sbjct 749 AGTAGAAAACATTATCTCAGCAAGAAAATACTATGCAGCGACCGTAGATTTAACAGGCGG 808
Query 714 TAAAAGCACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCGATCGCACAGCTGTC 773
|||| ||| ||||| ||||||||||| |||||||||| ||| || || |||||||| ||
Sbjct 809 CAAAAACACTAGAGCTCTTCTCGGAATCTGCTTGTGTGCATCGGCCATTGCACAGCTCTC 868
Query 774 AAAAGGAAGGAACAAAGAGGACAAGGACA-T--GGCTGCACCAGAGCTTCAGTCTCTGGC 830
|||||| ||||||||||||||||| ||| | ||| || ||||||||||| || |||||
Sbjct 869 AAAAGGCAGGAACAAAGAGGACAAAGACGCTACGGCAGCCCCAGAGCTTCATTCCCTGGC 928
Query 831 TGCAACTGCATTGGAGAGAGAGTACAAGCAAAAAGCTCCGG-CTAAGCT-CAACCTCCTC 888
|||| ||||| | |||| ||| |||||||||||||| |||| | || || |||| || ||
Sbjct 929 TGCAGCTGCAGTAGAGAAAGAATACAAGCAAAAAGCCCCGGACAAA-CTTCAAC-TCATC 986
Query 889 ACTTCTGCCTTGAGAAACTTGAA 911
|||| || || |||| ||||||
Sbjct 987 TCTTCCGCGTTAAGAATCTTGAA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5