BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477755
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04840.1 | Symbols: | Ribosomal protein S3Ae | chr3:1329665... 1469 0.0
AT4G34670.1 | Symbols: | Ribosomal protein S3Ae | chr4:1654861... 833 0.0
> AT3G04840.1 | Symbols: | Ribosomal protein S3Ae | chr3:1329665-1331617
FORWARD LENGTH=1074
Length=1074
Score = 1469 bits (795), Expect = 0.0
Identities = 959/1034 (93%), Gaps = 28/1034 (3%)
Strand=Plus/Plus
Query 1 AAATTGAAGAGGCGCCGTAGAAGCATTTTAGGTTAAATCTTGTTCTTG-TTGAT-TC--T 56
|||||||||| ||||||||| |||||||||||||||| ||| || ||| || | || |
Sbjct 1 AAATTGAAGAAGCGCCGTAGCAGCATTTTAGGTTAAAACTTATTGTTGATTCTTCTCTAT 60
Query 57 TC-TC-T-G------TTTCCTCAGCCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGG 107
|| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGG 120
Query 108 GTAGGAAGGGAGGAAAGAAGAAGGCTGTTGATCCTTTCTCCAAGAAGGACTGGTATGATG 167
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 121 GTAGGAAGGGAGGAAAGAAGAAGGCTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATG 180
Query 168 TCAAGGCTCCTTCAAACTTCAC-CAAACGGAATGTTGGAAAGACACTTGTTTCCAGGACT 226
| ||||||||||||| |||||| || | |||||||||||||||||||||||||||| |||
Sbjct 181 TTAAGGCTCCTTCAATCTTCACTCACA-GGAATGTTGGAAAGACACTTGTTTCCAGAACT 239
Query 227 CAGGGTACCAAAATTGCCTCTGAAGGTTTGAAACACAGAGTTTTTGAGGTCTCTCTAGCT 286
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 240 CAGGGTACCAAAATTGCCTCAGAAGGCTTGAAACACAGAGTTTTTGAGGTTTCTCTTGCT 299
Query 287 GATCTTCAAGTTGACGAAGATAATGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTC 346
|||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GATCTTCAAGGTGATGAGGATAACGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTC 359
Query 347 CAGGGCAGGAACGTTTTGTGCCAATTCTGGGGCATGGACTTCACAACCGACAAGCTTAGG 406
||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 360 CAGGGCAGGAACGTTCTGTGCCAATTCTGGGGCATGGACTTCACCACCGATAAACTTAGG 419
Query 407 TCATTGGTTAAAAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTCAAAACCACTGAC 466
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 420 TCATTGGTTAAGAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGAC 479
Query 467 AACTACACTCTGAGGCTATTCTGCATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAG 526
| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTACACTCTCAGGCTATTCTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAG 539
Query 527 AGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGAGATC 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 AGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGACATC 599
Query 587 ATGATTAAGGAAGCTTCCTCATGTGACCTGAAGGATCTTGTTGCTAAGTTCATTCCTGAA 646
||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 ATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAA 659
Query 647 GCTATTGGCAGGGAGATTGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTATTGGCAGGGAGATTGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTC 719
Query 707 ATCCGCAAAGTCAAGATCCTCAAGGCACCC-AAATTCGACCTTGGCAAGCTCATGGATGT 765
||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 720 ATCCGTAAAGTCAAGATCCTCAAGGC-CCCTAAATTCGACCTTGGCAAGCTCATGGATGT 778
Query 766 TCACGGAGATTATTCAGCAGAAGATGTTGGTGTTAAGGTAGAGAGGCCAGCTGATGAGAT 825
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 779 TCACGGAGATTACTCAGCAGAAGATGTTGGTGTTAAGGTAGACAGGCCGGCTGATGAGAT 838
Query 826 GGCCGTTGAGGAACCTACTGAAATCATCGGAGCTTAAGAATT-GAGAGATCTCTTTTTTC 884
||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
Sbjct 839 GGCTGTTGAGGAACCTACTGAAATCATCGGAGCTTAAGAAATCGAGAGATGTCTTTTT-C 897
Query 885 T-CATAAACTTTAGCTTTTAAAATGCTTTGTGTCGTTTCACAC--TCTTTTGTTCCCTCA 941
| | ||||||||||||||| | |||| ||| |||||||||| ||||||||||||
Sbjct 898 TTC-TAAACTTTAGCTTTTTGA-TGCTCTGT--CGTTTCACACACTCTTTTGTTCCCG-- 951
Query 942 GTTTAATTTTGCTGTATTGATGACTTTTCTCAGTGTAAACTTGCGAGTTTTTGATAATTT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GTTTAATTTTGCTGTATTGATGACTTTTCTCAGTGTAAACTTGCGAGTTTTTGATAATTT 1011
Query 1002 ATGGAACACCTTTT 1015
||||||||||||||
Sbjct 1012 ATGGAACACCTTTT 1025
> AT4G34670.1 | Symbols: | Ribosomal protein S3Ae | chr4:16548618-16550453
FORWARD LENGTH=1126
Length=1126
Score = 833 bits (451), Expect = 0.0
Identities = 681/794 (86%), Gaps = 8/794 (1%)
Strand=Plus/Plus
Query 72 CCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGG 131
||||||| |||||||| |||||||| || || ||||||||||| ||||||||||||||||
Sbjct 105 CCATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGG 164
Query 132 CTGTTGATCCTTTCTCCAAGAAGGACTGGTATGATGTCAAGGCTCCTTCAAAC-TTCACC 190
|||||||||| |||||||||||||| |||||||| || |||||||| | | |||| |
Sbjct 165 CTGTTGATCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCC-TGGTTCTTTCA-C 222
Query 191 AAAC-GGAATGTTGGAAAGACACTTGTTTCCAGGACTCAGGGTACCAAAATTGCCTCTGA 249
||| |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 223 GAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGA 282
Query 250 AGGTTTGAAACACAGAGTTTTTGAGGTCTCTCTAGCTGATCTTCAAGTTGACGAAGATAA 309
|| |||||||||| || |||||||| ||||| |||||||| ||| ||| || |||||
Sbjct 283 GGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGATCTACAAAATGATGAGGATAA 342
Query 310 TGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAACGTTTTGTGCCA 369
||| ||||||||||||||||| |||||||||||||| ||||| ||||| || ||| |||
Sbjct 343 TGCCTACAGGAAGATCCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGTTGACCCA 402
Query 370 ATTCTGGGGCATGGACTTCACAACCGACAAGCTTAGGTCATTGGTTAAAAAGTGGCAGAC 429
|||||||| ||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 403 GTTCTGGGGTATGGATTTCACAACCGACAAGCTAAGGTCATTGGTGAAGAAGTGGCAGAC 462
Query 430 TTTGATTGAGGCTCATGTTGATGTCAAAACCACTGACAACTACA-CTCTGAGGCTATTCT 488
||||||||| || ||||| ||||| |||||||| ||| ||||| || ||||| | ||||
Sbjct 463 TTTGATTGAAGCCCATGTCGATGTGAAAACCACAGACGGCTACACCT-TGAGGATGTTCT 521
Query 489 GCATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCA 548
||||||||||||| ||||||||||||||||| || ||| | || || |||||||||||||
Sbjct 522 GCATCGCCTTCACAAAGAGACGTGCTAACCAAGTGAAGCGTACCTGTTACGCTCAATCCA 581
Query 549 GCCAAATCCGTCAGATCCGCAGGAAGATGAGGGAGATCATGATTAAGGAAGCTTCCTCAT 608
|||||||||||||||||||||| |||||||| ||||| ||| | ||||| ||||| || |
Sbjct 582 GCCAAATCCGTCAGATCCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATCTT 641
Query 609 GTGACCTGAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGATTGAGA 668
||||||| ||||| || || || |||||||| || || || ||||| || ||||||||||
Sbjct 642 GTGACCTCAAGGAGCTAGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGAGA 701
Query 669 AGGCAACTCAGGGCATCTACCCTCTT-CAGAATGTTTTCATCCGCAAAGTCAAGATCCTC 727
||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||
Sbjct 702 AGGCAACACAGGGCATCTACCCG-TTGCAGAATGTGTTCATCCGTAAAGTGAAGATCCTA 760
Query 728 AAGGCACCCAAATTCGACCTTGGCAAGCTCATGGATGTTCACGGAGATTATTCAGCAGAA 787
||||| ||||| || |||||||| ||||||||||| || || |||||||| |||||||
Sbjct 761 AAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCAGAG 820
Query 788 GATGTTGGTGTTAAGGTAGAGAGGCCAGCTGATGAGATGGCCGTTGAGGAACCTACTGAA 847
||||||||||| |||||||| |||||||||||||||| |||||||| || || |||
Sbjct 821 GATGTTGGTGTGAAGGTAGACAGGCCAGCTGATGAGACAATGGTTGAGGAGCCAACAGAA 880
Query 848 ATCATCGGAGCTTA 861
||||||||||||||
Sbjct 881 ATCATCGGAGCTTA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5