BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477757
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04860.1 | Symbols: | Plant protein of unknown function (DU... 1840 0.0
AT5G28150.1 | Symbols: | Plant protein of unknown function (DU... 60.2 5e-08
> AT3G04860.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr3:1339104-1340623 REVERSE LENGTH=1437
Length=1437
Score = 1840 bits (996), Expect = 0.0
Identities = 1139/1206 (94%), Gaps = 17/1206 (1%)
Strand=Plus/Plus
Query 62 TCATTCTTTCCTTGGTTGATGAAACTGGATCGATTTGATAAAACCCAGATCAAATCTGTT 121
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 103 TCATTCTCTCCTTGGTTGATGAAACTGGATCGATTTGATAGAACCCAGATCAAATCTGTT 162
Query 122 GACATTTTTCCAAATTTCGATGCTTTTTTGAGATTGGGTTTCTCTTTCTTTTGAAT-TAA 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 163 GACATTTTTCCAGATTTCGATGCTTTTTTGAGATTGGGTTTCTCTTTCTTTTG-ATGAAA 221
Query 181 CTTATCATCAGTTTCAGCGTTGCGCAGTTTTGGCCACAAAGTGTTTGTTGAAATTCC--T 238
||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 222 CTTATCA-C--TTTCAGCGTTGCCCAGTTTTGGCCACAAGGTGTTTGTTGAAATTCCGGA 278
Query 239 GAGAGAGAGAAGCTGGAAATTGGGAATTCCGTAA-G-----AAAATGAGAGATTTCCCTT 292
|||||||||||||| |||||||||||||| |||| | |||||||||||||| ||||
Sbjct 279 GAGAGAGAGAAGCTCGAAATTGGGAATTCTGTAAGGAAAAAAAAATGAGAGATTTTCCTT 338
Query 293 CTTGCTCCGGTGAAAATGGCGTCCAGATTGCGGATTCTTCGTCTTCATCGAGCGCTGGAA 352
||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 339 CTTGCTCTGGTGAAAATGGTGTTCAGATTGCGGACTCTTCGTCTTCCTCGAGCGCTGGAA 398
Query 353 GAAATGCTCAGAATTTGGTCATTTGTATCTACCGTTGCCGCATCAGAGGTAGGACTTG-T 411
||||||||||||||||||| || || |||||||||||||||||| ||||||||||||| |
Sbjct 399 GAAATGCTCAGAATTTGGTAATATGCATCTACCGTTGCCGCATCCGAGGTAGGACTTGCT 458
Query 412 ATGATCACAGTCACATGGACTAAGAATCTTATGGGTCAGTGTGTTACCGTGGGAGTTGAT 471
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 459 -TGATCACAGTCACATGGACTAAGAATCTGATGGGTCAGTGTGTTACCGTGGGGGTTGAT 517
Query 472 GATTCTTGCAACCGAAGTCTGTGTAAAGTTGAGATTAAGCCGTGGCTCTTCACTAAACGA 531
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 518 GATTCTTGCAACCGAAGTCTGTGTAAAGTCGAGATTAAGCCGTGGCTCTTCACTAAACGA 577
Query 532 AGAGGGTCCAAAAGTCTAGAGGCGTATGCCTGTAGTATCGATGTTTTCTGGGATCTCTCG 591
| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 578 AAAGGGTCCAAGACTCTAGAGGCGTATGCCTGTAATATCGATGTTTTCTGGGATCTCTCG 637
Query 592 TCTGCTAAATTCGGATCCAGCCCTGAACCTTTAGGAGGGTTCTATGTTGGAATTGTTGTG 651
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 638 TCTGCTAAATTTGGATCCAGCCCTGAACCTTTAGGAGGGTTCTATGTTGGAGTTGTTGTT 697
Query 652 GACAAAGAAATGGTTCTTCTTCTTGGTGATATGAAGAAAGAGGCTTTTAAAAAGACGAAT 711
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 698 GACAAAGAGATGGTTCTTCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAAAAGACGAAT 757
Query 712 GCCGCACCTTCTTCATCTCTAGGTGCTCTGTTCATTGCTAAGAAAGAGCATGTCTTTGGC 771
|| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 758 GCTGCACCTTCTTCATCTTTAGGTGCTGTGTTCATTGCTAAGAAAGAGCATGTCTTTGGC 817
Query 772 AAGAGAACGTTTGCAACTAAAGCTCAATTTTCAGGTGATGGCAAAACTCATGATCTTGTG 831
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 818 AAGAGAACGTTTGCAACTAAAGCTCAGTTTTCAGGTGATGGCAAAACTCATGATCTTGTG 877
Query 832 ATCGAATGTGACACCAGTATCAGTGATCCTTGTCTCATTGTTCGTGTTGATGGAAAGA-C 890
||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||| |
Sbjct 878 ATCGAGTGTGACACTAGTCTCAGTGATCCTTGTCTCATTGTTCGTGTCGATGGAAAGATC 937
Query 891 TTTGATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAACGATACCATAATCGTCAA 950
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 938 TT-GATGCAAGTGCAGCGGCTTCATTGGAAGTTCCGTGGCAACGATACCATAATTGTCAA 996
Query 951 TAGGATCTCTGTGGAAGTCCTCTGGGATGTCCACAGTTGGTTCTTTGGGATGCCATCATC 1010
||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 997 TAGAATCTCTGTGGAAGTTCTCTGGGATGTCCACAGTTGGTTCTTTGGGTTGCCATCATC 1056
Query 1011 TCCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTTGAAAAGACTTGGTCTTT 1070
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1057 ACCAGGAAATGCAGTGTTTATGTTCAGGACTTGTCAATCTGTTGAAAAGACCTGGTCTTT 1116
Query 1071 CACGCAGGTCCCCACGAGCTCGAAATCTCAAAGTTTTGGGTTTTCATTGATTCTGTACGC 1130
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1117 CACACAGGTCCCCACGAGCTCAAAATCTCAAAGTTTTGGGTTTTCATTGATTCTGTATGC 1176
Query 1131 TTGGAAGAACGAGTAGAGAAGAAGAGTTTTGAGAGTTCTTTTCTTTCTCTTGAGTGCTAA 1190
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1177 TTGGAAGAACGAGTAGAGAAGAAGAGTTTTGAGAGTTCTTTTGTTTCTCTTGAGTGCTAA 1236
Query 1191 CTAAAGGTTAAAAAGGAACTGTTGATTCTTGCCAATTTATTTTATCATATGATCAATTGG 1250
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1237 CTAAAGGTTAAAAAGGAACTGTTGATTCTTGTCAATTTATTTTATCATATGATCAATTGG 1296
Query 1251 TTTCAA 1256
||||||
Sbjct 1297 TTTCAA 1302
> AT5G28150.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr5:10135434-10136977 FORWARD LENGTH=1453
Length=1453
Score = 60.2 bits (32), Expect = 5e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 214 CCACAAAGTGTTTGTTGAAATTCCTGAGAGAGAGA 248
|||| ||||||||||||||||||||||||||||||
Sbjct 268 CCACCAAGTGTTTGTTGAAATTCCTGAGAGAGAGA 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5