BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477758
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04870.1 | Symbols: ZDS, PDE181, SPC1 | zeta-carotene desatu... 3097 0.0
AT3G04880.1 | Symbols: DRT102 | DNA-damage-repair/toleration pr... 150 4e-35
> AT3G04870.1 | Symbols: ZDS, PDE181, SPC1 | zeta-carotene desaturase
| chr3:1342718-1346387 FORWARD LENGTH=1999
Length=1999
Score = 3097 bits (1677), Expect = 0.0
Identities = 1836/1912 (96%), Gaps = 14/1912 (1%)
Strand=Plus/Plus
Query 55 AGCGATTGCTCTTATCTCAGTTGATTGGCCATGGCTTCTTCAATCGTCTTCGCCGCAACT 114
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 95 AGCGATTGCTCTTATCTCAGTTGATTGGCCATGGCTTCTTCAGTCGTCTT---CG----- 146
Query 115 CCGGCTACTGGGTTTCTCTCCGTTCCTCCTTTGAAGTCTCGGAGATTTTATGTTAATTCT 174
|||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 147 -CGGCAACTGGGTCTCTCTCCGTTCCTCCATTGAAGTCTCGGAGATTCTATGTTAATTCT 205
Query 175 TCACTCGACTCCGATGTTTCCGACATGAGTGTTAACGCTCCAAAGGGGTTATTTCCTCCA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TCACTCGACTCCGATGTTTCCGACATGAGTGTTAACGCTCCAAAGGGGTTATTTCCTCCA 265
Query 235 GAGCCTGTACCATACAAGGGACCTAAGCTGAAAGTAGCTATCATAGGAGCTGGACTTGCA 294
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 266 GAGCCTGTACCATACAAGGGACCTAAGCTGAAAGTAGCCATTATAGGAGCTGGACTTGCA 325
Query 295 GGCATGTCAACTGCTGTAGAGCTTCTCGATCAGGGTCACGAGGTGGATATATATGATTCT 354
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 326 GGCATGTCGACTGCTGTAGAGCTTCTGGATCAGGGTCACGAGGTGGATATATATGATTCG 385
Query 355 AGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAA 445
Query 415 ATGGGATTACATGTATTCTTCGGATGCTACAACAATCTCTTCCGCTTGATGAAGAAGGTG 474
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 446 ATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGGTG 505
Query 475 GGTGCTGATAAAAACCTTCTTGTCAAAGACCATACTCATACATTTATAAACAAAGACGGG 534
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 506 GGTGCTGAGAAAAACCTTCTAGTCAAAGACCATACTCATACATTTATAAACAAAGACGGC 565
Query 535 ACAGTTGGAGAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATTCATGGCATTCGCGCA 594
||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 566 ACAATTGGAGAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCA 625
Query 595 TTTTTGGTCACAAATCAACTCAAGCCCTATGATAAACTAAGGAATTCACTGGCTCTTGCA 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 626 TTTTTGGTCACAAATCAACTCAAGCCCTATGACAAACTAAGGAATTCACTGGCTCTTGCA 685
Query 655 TTAAGCCCAGTTGTTAAAGCTCTCGTCGACCCCGATGGAGCAATGAGAGACATTCGCAAT 714
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 686 TTAAGCCCTGTTGTTAAAGCTCTTGTCGACCCCGATGGAGCAATGAGAGACATTCGCAAC 745
Query 715 CTTGACAGCATAAGTTTCTCGGATTGGTTCCTGTCGAAAGGTGGGACACGGGCAAGTATC 774
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 746 CTTGACAGCATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATC 805
Query 775 CAGAGAATGTGGGATCCTGTTGCTTATGCACTCGGTTTCATAGACTGCGATAACATGAGT 834
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 806 CAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGACTGCGATAACATGAGT 865
Query 835 GCGCGATGTATGCTTACCATATTCTCATTATTCGCCACCAAAACAGAAGCTTCTTTGTTG 894
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 866 GCGCGATGCATGCTTACAATATTCTCATTATTCGCTACCAAAACAGAAGCTTCTCTGTTG 925
Query 895 CGTATGCTAAAGGGCTCGCCTGATGTTTACTTGAGTGGTCCTATCAAACAATATATCACA 954
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CGTATGCTCAAGGGCTCTCCTGATGTTTACTTGAGTGGTCCTATCAAACAATATATCACA 985
Query 955 GATAGAGGTGGCAGAATCCATCTAAGGTGGGGTTGTAGGGAGATACTTTATGATAAATCA 1014
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 986 GATAGAGGTGGCAGAATCCATCTAAGGTGGGGTTGCAGGGAGATACTTTATGATAAATCA 1045
Query 1015 GCAGATGGAGAAACCTATGTCACTGGACTAGCAATTTCTAAGGCTACGAACAAGAAGATT 1074
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GCAGATGGAGAAACTTATGTCACTGGACTAGCAATTTCTAAGGCTACGAACAAGAAGATT 1105
Query 1075 GTGAAAGCTGATGTGTATGTTGCAGCATGTGATGTGCCGGGAATCAAAAGATTACTTCCA 1134
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1106 GTGAAAGCTGATGTATATGTTGCAGCATGTGATGTGCCGGGAATCAAAAGGTTACTTCCA 1165
Query 1135 AAAGAATGGAGGGAATCTCGGTTTTTCAACGATATATATGAACTCGAGGGAGTACCTGTT 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 AAAGAATGGAGGGAATCTCGGTTTTTCAACGATATATATGAACTCGAGGGAGTACCTGTG 1225
Query 1195 GTTACAGTACAGCTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTTCC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1226 GTTACAGTACAGCTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCT 1285
Query 1255 AGGCAGTTGAAACGAGCGGTTGGCTTAGATAACCTTCTTTACACTCCTGATGCTGATTTC 1314
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1286 AGGCAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTACACTCCTGATGCTGATTTC 1345
Query 1315 TCGTGCTTTGCGGATCTTGCACTCGCTTCGCCTGCAGATTATTACATCGAAGGACAAGGC 1374
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1346 TCGTGCTTTGCGGATCTTGCACTAGCTTCGCCTGCAGATTATTACATCGAAGGACAAGGC 1405
Query 1375 ACTTTACTTCAGTGCGTTCTAACACCGGGAGATCCATACATGCGAATGCCGAACGATAAG 1434
|||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||
Sbjct 1406 ACTTTACTTCAGTGCGTTCTAACACCAGGAGATCCGTATATGCGAATGCCAAATGATAAG 1465
Query 1435 ATCATAGAGAAAGTAGCGATGCAGGTCACTGAGTTGTTTCCATCGTCACGGAG-CCTAGA 1493
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1466 ATCATAGAGAAAGTAGCGATGCAGGTCACTGAGTTGTTTCCATCGTCACG-AGGCCTAGA 1524
Query 1494 AGTCACTTGGTCATCGGTTGTAAAAATCGCTCAGTCTCTGTACCGTGAAGCACCCGGAAA 1553
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 AGTCACTTGGTCGTCGGTTGTAAAAATCGCTCAGTCTCTGTACCGTGAAGCACCCGGAAA 1584
Query 1554 AGATCCATTCAGACCCGATCAGAAGACGCCCATAAAGAATTTCTTCCTCGCTGGTTCATA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1585 AGATCCATTCAGACCCGATCAGAAGACGCCCATAAAGAATTTCTTCCTCGCCGGTTCATA 1644
Query 1614 CACAAAGCAGGATTACATAGATAGTATGGAAGGAGCGACATTATCAGGGAGACAAGCTTC 1673
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1645 CACAAAGCAGGATTACATAGATAGTATGGAAGGAGCAACATTATCAGGGAGACAAGCTTC 1704
Query 1674 GTCATACATCTGTGATGCCGGTGAAGAACTAGCAGAGCTAAACAAGAAGCTTTCTTCTTC 1733
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 GTCATACATCTGTGATGCTGGTGAAGAACTAGCAGAGCTAAACAAGAAGCTTTCTTCTTC 1764
Query 1734 TGCAACTGCAGTTCCTGATGAGCTAAGTCTGGTCTAATGATGGGAAAATGTTTGAAAGTA 1793
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1765 TGCAACTGCAGTTCCTGATGAGCTAAGTCTGGTCTAATGATGA-AAAATGTTTGAAAGTA 1823
Query 1794 GTTCCCAATGGCTAATTGATGAAGATTTGAGACACTATGGGTACATGAAGAAGAAACATA 1853
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1824 GTTACCAATGGCTAATTGATGAAGATTTGAGACACTATGGGTACATGAAGAAGAAGCATA 1883
Query 1854 TGTAGAAAAACCCTTTATATAGTGTTCATAAGAGAAAGCATTTGTATTATGACACAATCT 1913
|||||||| |||||||||||||||||||||||||||| ||||||| ||| |||| ||||
Sbjct 1884 TGTAGAAA--CCCTTTATATAGTGTTCATAAGAGAAAGTATTTGTAATATTACACCATCT 1941
Query 1914 TTTGAAATCAAACATTCTTACAAAGTACATCAATTCCAGAAAGTTTATTCTC 1965
|||||||||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct 1942 TTTGAAATCAAAGATTCTTACAAAGTACATCAATTTAAGAAAGTTTACTCTC 1993
> AT3G04880.1 | Symbols: DRT102 | DNA-damage-repair/toleration
protein (DRT102) | chr3:1346273-1347377 REVERSE LENGTH=1105
Length=1105
Score = 150 bits (81), Expect = 4e-35
Identities = 97/105 (92%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1861 AAACCCTTTATATAGTGTTCATAAGAGAAAGCATTTGTATTATGACACAATCTTTTGAAA 1920
||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||
Sbjct 1101 AAACCCTTTATATAGTGTTCATAAGAGAAAGTATTTGTAATATTACACCATCTTTTGAAA 1042
Query 1921 TCAAACATTCTTACAAAGTACATCAATTCCAGAAAGTTTATTCTC 1965
||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct 1041 TCAAAGATTCTTACAAAGTACATCAATTTAAGAAAGTTTACTCTC 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5