BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477763
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04900.1 | Symbols: | Heavy metal transport/detoxification ... 765 0.0
> AT3G04900.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:1349302-1349928 REVERSE LENGTH=627
Length=627
Score = 765 bits (414), Expect = 0.0
Identities = 542/601 (90%), Gaps = 19/601 (3%)
Strand=Plus/Plus
Query 1 ATGAATCTCCAGTGTTGTGAAGACTTTCCTTCTCGGATAAAGAAGCTTTTGCGCAAAGTA 60
|||||||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||||
Sbjct 37 ATGAATCTCCAGTGTTGTGAAGACTTCCCTTCACGGGTCAAGAAGCTTTTGCGCCAAGTA 96
Query 61 AAAGGAGTTTACGCCATAACCATAGACCCTGTGAAGGGTCTGATTTTGGTCTCTGGCACA 120
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 97 AAAGGAGTTTACGCCATAACCATAGACCCGGTGAAGGGTCTGATTTTGGTCTGTGGCACA 156
Query 121 GCAGAACCTTCAGTGCTTATCAAAGCCGTCGCAAAAATCGGACAAAGTCCCCAACTTTAC 180
||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 157 GCAGAACCTTCGGTGCTTATCAAAGCCGTCGCAAAATTGGGGCAAAGTCCCCAACTTTAC 216
Query 181 GCCTACGAGAAGGATCCAGCTACGGCTAAGACCCGATTCCGCACCTTGCTTAAACGGTAC 240
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 217 GCCTACGAGAAGGATCCAGCTACAGCAAAGACCCGATTCCGCACCTTGCTTAAACGTTAT 276
Query 241 GCCACCAACAAGGGC-CAAGATGAACCATCCTCC-CCTGCACC---TGTCACGGCAACCA 295
|||||||||||| | |||||| |||||||| || |||||||| ||||||||||||||
Sbjct 277 GCCACCAACAAGA-CACAAGATAAACCATCC-CCGCCTGCACCACCTGTCACGGCAACCA 334
Query 296 ACCCCGTGGAAACTTGTCCAGCGGGAGGTGGAACATTTAGAGGTTTCGGGTATCCTGGAC 355
||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 335 CCCCCGTGGAAACTTGTCCAGCAGGAGGTGAAACATTTAGAGGTTTTGGGTATCCTGGAC 394
Query 356 CACCGACGATGATGCAGATGCCGGCCTTTACGTTGCCCCCAAGGATG-GGACCGCCTGGA 414
|| ||||||||||||||||||| |||||| ||||||||||| || | |||| ||| |||
Sbjct 395 CAACGACGATGATGCAGATGCCCGCCTTTTCGTTGCCCCCACCGA-GAGGACTGCCGGGA 453
Query 415 TGGTTAGCACCGTCGGCAAAACCGAGGTTGATGGTGAAGTACGAGGAGCCAAAGGTGACG 474
||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct 454 TGGTTAGCACCACCGACAAACCCGAGGTTGA-----A-GTACGAGGAGCCAAAGGTGACG 507
Query 475 ACC-AGGAAACCGCCAGCGCCTTATCCCTTT-GATTTCTACGAAAACTTGGGTTTTCCAC 532
|| ||||| ||||| ||||||||||| ||| |||| ||||||||||||||| |||||||
Sbjct 508 -CCGAGGAAGCCGCCTGCGCCTTATCC-TTTCGATTACTACGAAAACTTGGGGTTTCCAC 565
Query 533 CATCCGACTCTCTTTTCAACTATTTCAGCGATGAGAACGCTCAACCTTGCACTATCATGT 592
|||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||
Sbjct 566 CATCCGACTCTCTTTTCAACTATTTCAGCGATGATAACCCTCAACCTTGCTCCATCATGT 625
Query 593 G 593
|
Sbjct 626 G 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5