BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477767
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04920.1 | Symbols: | Ribosomal protein S24e family protein... 1158 0.0
AT5G28060.1 | Symbols: | Ribosomal protein S24e family protein... 518 4e-146
> AT3G04920.1 | Symbols: | Ribosomal protein S24e family protein
| chr3:1360882-1362295 FORWARD LENGTH=739
Length=739
Score = 1158 bits (627), Expect = 0.0
Identities = 689/719 (96%), Gaps = 4/719 (1%)
Strand=Plus/Plus
Query 1 TTCGGCGTCTCTTTCCTTTACCCGAGCGGACGAAAACACTCAAGCTTGCAGAGATCTTTC 60
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 22 TTCGGCGTCTCTTTCCTTCACCTGAGCGGACGAAAACACTCAAGCTTGCAGAGATCTTTC 81
Query 61 ACTTTAATCCTTGAGAAATCGCAAAAATGGCTGAAAAGGCAGTCACCATCCGAACCAGGA 120
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 82 ACTTTAATCCTTGAGAAGTAGCAAAAATGGCTGAAAAGGCGGTCACCATCCGAACCAGGA 141
Query 121 AATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTG 201
Query 181 GAAGAGCCAATGTTTCAAAGGCTGAGCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GAAGAGCCAATGTTTCAAAGGCTGAGCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCA 261
Query 241 AGGACCCAAATGCTATCTTTGTTTTCAAATTCAGAACCCACTTTGGAGGTGGTAAATCAT 300
|||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 262 AGGATCCAAATGCAATCTTCGTATTCAAATTCAGAACCCACTTTGGAGGTGGTAAATCAT 321
Query 301 CCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCCAAGAAGTTTGAACCCAAATACA 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 322 CCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACA 381
Query 361 GACTTATCAGGAATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATCAAGGAAA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 382 GACTTATCAGGAATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAA 441
Query 421 GGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGACAAAGGCTGGTGATCCCAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 442 GGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGACAAAGGCTGGTGATGCCAAGA 501
Query 481 AGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 502 AGAAGTGAGATCCTGAAGAGAGAATCTTTATCTTGTGGGTTCTTGTTCTCCATAATCAAT 561
Query 541 CACCTTTTATGTTATTTATCTGCTGTTAGATCGTTTCTCCAACTAGACATGTTTACTGAA 600
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 562 CACCTTTTATGTTATTTGTCCGCTGTTAGATCGTTTCTCCAACTAGACATGTTTACTGAA 621
Query 601 ATCTCAGattttcttttatttt-gtttcggtc-gatttattttttaagtttaGAGGAACA 658
|||| |||||||| |||||||| |||| |||| | ||||| |||| ||||||||| ||||
Sbjct 622 ATCTGAGATTTTCGTTTATTTTTGTTTTGGTCAG-TTTATGTTTTGAGTTTAGAGAAACA 680
Query 659 TATGATCTAAGGTTTT-GTTCAATACATCTATTTAAACTCTCTCTTGTCTGTTTCCACC 716
||||||| |||||||| |||||||||| |||||||| |||||||| |||| ||||||||
Sbjct 681 TATGATCCAAGGTTTTTGTTCAATACAACTATTTAATCTCTCTCTCGTCTCTTTCCACC 739
> AT5G28060.1 | Symbols: | Ribosomal protein S24e family protein
| chr5:10069546-10070899 REVERSE LENGTH=754
Length=754
Score = 518 bits (280), Expect = 4e-146
Identities = 372/417 (89%), Gaps = 4/417 (1%)
Strand=Plus/Plus
Query 76 AAATCGCAAAAATGGCTGAAAAGGCAGTCACCATCCGAACCAGGAAA-TTCATGACCAAC 134
|||||||| ||||| ||||| || ||||| ||| | |||| |||| ||||||||||||
Sbjct 97 AAATCGCAGCCATGGCGGAAAAAGCTGTCACTATCAGGACCA-GAAACTTCATGACCAAC 155
Query 135 AGACTTCTCTCCAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTGGAAGAGCCAATGTT 194
|| |||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 156 AGGCTTCTCGCCAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAGAGCCAATGTT 215
Query 195 TCAAAGGCTGAGCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCAAGGACCCAAATGCT 254
|||||||||||||| |||||||| | || |||||||| ||||| |||||||||||||||
Sbjct 216 TCAAAGGCTGAGCTTAAGGAGAAATTGGCGAGGATGTATGAGGTTAAGGACCCAAATGCT 275
Query 255 ATCTT-TGTTTTCAAATTCAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTT 313
||||| ||||| ||| |||||||| |||||||||||||||||||| || || | ||||||
Sbjct 276 ATCTTCTGTTT-CAAGTTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTT 334
Query 314 GATCTATGATACTGTTGAGAGCGCCAAGAAGTTTGAACCCAAATACAGACTTATCAGGAA 373
||||||||||||||| |||| ||| ||||||||||| || || |||||||||||||||||
Sbjct 335 GATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGAA 394
Query 374 TGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATCAAGGAAAGGAAGAACAGGGC 433
|||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 395 TGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGC 454
Query 434 GAAGAAAATCCGTGGTGTTAAGAAGACAAAGGCTGGTGATCCCAAGAAGAAGTGAGA 490
|||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 455 GAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTGGTGATACCAAGAAGAAGTAAGA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34711795577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5