BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477768
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04930.1 | Symbols: | DNA-binding storekeeper protein-relat... 2567 0.0
> AT3G04930.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr3:1362905-1364799 FORWARD
LENGTH=1895
Length=1895
Score = 2567 bits (1390), Expect = 0.0
Identities = 1752/1911 (92%), Gaps = 87/1911 (5%)
Strand=Plus/Plus
Query 1 GAACACACCACCTTCTCTCCAATCTGGATCTGG-T--TCTTCTTCTTGGTCTATTCTTCA 57
||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||
Sbjct 14 GAACACACCACCTTCTCTCCAATCTGGATCTGGTTCCTCTTCTTCTTGGTCTCTTCTCCA 73
Query 58 TCTCACCGTAGCTGATCTCGTATTGTTCTCCGTTCATTTGTTACGGTGGAGATGACATCG 117
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 74 TCTCATCGGAGCTGATCTCGAATTGTTCTCCGTTCATTTGTTACGGTGGAGATGACATCG 133
Query 118 GATCACCGCGA--CTCTGCTT-TCTCT---A-TGGAATCGCCGGATCCGGAGGAAGGAGG 170
||||||||||| |||| || ||||| | |||||||||| |||||||| ||||||||
Sbjct 134 GATCACCGCGACGCTCT-TTTCTCTCTGGAACTGGAATCGCCTGATCCGGACGAAGGAGG 192
Query 171 TGTAGGAGACGGAGGAGAATCTGATACCGACGAGGATTTGCGTGACAACGATGATGTTGT 230
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 193 TGTAGCAGACGGAGGAGAATCTGATACCGACGAGGATTTGCGCGACAACGATGATGTTGT 252
Query 231 TATGCCGGAAACGAACGAAGCCGAAGCTGAAGACGACGATCCCGAAGAGGAAGATCTCAA 290
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 253 TATGCCGGGAACGAACGAAGCTGAAGCTGAAGACGACGATCCCGAAGAGGAAGATCTCAA 312
Query 291 TTCTCCG---------TCACTCGCCATGGTTTCTACCATCTCGGCGACTGCGGTTGTTTC 341
||||||| |||||| ||||||||||||| ||||| |||||||| ||||||||
Sbjct 313 TTCTCCGTCTACATCATCACTCCCCATGGTTTCTACGATCTCAGCGACTGCTGTTGTTTC 372
Query 342 CGGGAAGCCGACGGCGACTCCCTCTACAGGCGCCGTGACTGTTGCTCTTCCGGCTGGATC 401
||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 373 CGGGACCCCGACGGCGACTTCCTCTACAGGCGCCGTGACCGTTGCACTTCCGGCTGGATC 432
Query 402 CGCCGTCCCTGTCTCTGTGATTCCCGTTGATTCCGATCCGAAATGGCACCGTATGACGGA 461
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 433 CGCCGTCCCTGTCTCCGTGATTCCCGTTGATTCCGATCCGAAGTGGCACCGTATGACGGA 492
Query 462 GATCGTTCACCAGAGACCTCCGATCGATGATTCTAGACGCCTATTCCAGAGGCTGTGGAC 521
|||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 493 GATCGTCCATCAGAGACCACCGATCGATGATTCTAGACGCCTTTTCCAGAGGCTGTGGAC 552
Query 522 GGATGAAGACGAGATCGAGCTTCTCCGTGGTTTTCTCGATTACATGACGACGCACCGTGG 581
|| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 553 AGACGAAGACGAGATCGAGCTTCTTCGTGGTTTTCTCGATTACATGACGATGCACCGCGG 612
Query 582 TAGCAGCTCGCATCCGCCGGATACGGCGCCGTTTTACGAGCAGATAAAGTCGAAACTTCA 641
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 613 AAGCAGCTCGCATCCGCCGGATACGGCGCCGTTTTATGAGCAGATAAAGTCGAAACTTCA 672
Query 642 GCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGCTTCGGCGATTGAAGAAGAAGTACAG 701
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 673 GCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGCTTCGGAGATTGAAGAAGAAGTACAG 732
Query 702 GAATGTGATGAGCAAGATCAGCTCTGGTAAAGAGGTATTCTTCAAGAGCCCTCATGATCA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GAATGTGATGAGCAAGATCAGCTCTGGTAAAGAGGTATTCTTCAAGAGCCCTCATGATCA 792
Query 762 GTCTACTTTCGAGATTTCTAGGAAAATCTGGAACCAAACTGGGAAAATCATAGGGTTTGA 821
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 793 GTCTACTTTCGAGATTTCTAGAAAAATCTGGAACCAAACTGGGAAAATCATAGGCTTTGA 852
Query 822 AGATAACAACGTAATGGATTTCGAAGAAACCAATAACCATCATAACACCA--A-TGGTAA 878
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 853 AGATAACAACGTAATGGATTTCGAAGAAACCAATAACCATCATAACACCACCAATGGTAA 912
Query 879 CTACTCAACCTTTAACAGCCCTAGTTCTAATCCTACTCTGGAGCTCGATTCCGAAAACGG 938
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 913 CTACTCAACCTTTAACAGCCCTAGTTCTAATCCTACTCTGGAGCTCGACTCCGAAAATGG 972
Query 939 AGTCGAGAAGAAATTGACAATGAGTAGCAGTAGCGTGTCGAGAAAACGATCACGATCAAG 998
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AATCGAGAAGAAATTGACAATGAGTAGCAGTAGCGTGTCGAGAAAACGATCACGATCAAG 1032
Query 999 AATTGGGAAGATTGAGGAAGACAACAAACCCGTCATCACTCCCTCTGATGGGCAGATACC 1058
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1033 AATTGGGAAGATTGAGGAAGACAACAAACCTGTCATCACTCCCTCTGATGGGC-----C- 1086
Query 1059 AAATGCAGCTAGCAATGTTAACCTCAACGAAACCGCAGCAGCTGTTGGTATTGGAGGAAA 1118
|| | |||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 1087 AA-T--AGCTAGCAATGTCAACCTCAACGAA---GCTGCAGCTGTTGGTATTGGAGGAAA 1140
Query 1119 TCTCGGGGGTTTGATCGAAGAGACTGTGAAAAACTGCGTTTCTCCTGTGATCAAGGAGAT 1178
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1141 TCTCGGGGGTTTGATCGAAGAGACTGTGAAAAACTGTGTCTCTCCTGTGATCAAAGAGAT 1200
Query 1179 GATGAATGGGACAACAAGTATGATGATGGCTGCAATGGGAGGAGGGTTTCCAGGT---GG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1201 GATGAATGGGACAACAAGTATGATGATGGCTGCAATGGGAGGAGGGTTTCCGGGTCTTGG 1260
Query 1236 TGGTGGTGGT---------------CATGGCTTTGGCTCGCTAAGCCCCATGTTTACACG 1280
|||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1261 TGGTGGTGGTGGTGGTGGTGGTGGTCATGGTTTTGGCTCGCTAAGCCCCATGTTTACACG 1320
Query 1281 GCCGCTCAATTTCGGTTTTGGTGTAGAAGGG-GGAGGAAACAAGGCGGTGGCAGATGAGC 1339
|||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1321 GCCGTTCAATTTCGGTTTTGGTGTAGA-GGGAGGAGGAAACAAGGCGGTTGCAGATGAGC 1379
Query 1340 GGTGGAGGAAACAACAGATTCTGGAGCTGGAAGTGTATTCAAGGAGATTAGAATTGGTTC 1399
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1380 GGTGGAGGAAACAACAGATTCTGGAATTGGAAGTGTATTCAAGGAGATTAGAGTTGGTTC 1439
Query 1400 AAGAGCAGATTAGAACAACATTGAACGAGTTAAAGACGATGCCGAGTGGTGTATGATGAA 1459
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1440 AAGAGCAGATTAGAACGACATTGAACGAGTTAAAGACGATGCCGAGTGGTATATGATGAA 1499
Query 1460 GAGCAAGAAGAATAAGACAAGAAATAACCAGTTAGGTTGATATTTGATATCTCTGAATTA 1519
| || ||||||||||||||| || ||||| ||||||||||||||||||||| ||| |||
Sbjct 1500 GGGCGAGAAGAATAAGACAACAAGGAACCATTTAGGTTGATATTTGATATCTTTGAGTTA 1559
Query 1520 ACCTTCTGGTGTGTGGGTGAGTATAGTAAGAGATTTGAATCTTTTTTAAGTTATAAATTG 1579
||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1560 ACCTTCTGGTGTGTGAGTGAGTATAGTAAGAGATTTGGATCTTTTT-AAGTTATAAATTG 1618
Query 1580 CTAAGGTATTGTGATCTTTCTCTAGGTTTT-----------GAttttttttt-tt-t-CT 1625
||||||||||||||||||||||||||||| ||||||||||| || | ||
Sbjct 1619 GTAAGGTATTGTGATCTTTCTCTAGGTTTTTTCATCATTTTGATTTTTTTTTCTTCTTCT 1678
Query 1626 TATCTTTAAATTATTTGTCAATAGGGATGAATCATAGGTggggggggggggggTTTGTGT 1685
|||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1679 TATCTTTAAATTATTTGTCAATAGGGATGAATCATAGGAGGGGGG--------TTTGTGT 1730
Query 1686 ATAACCTTT-GTATTAGATTATAGtttttttttCGTAGAATCATTTGTTCAATAACAAAC 1744
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1731 ATAACCTTTTGTATTAGATTATAGTTCTTTTTTCGTAGAATCATTTGTTCAATAACAAAC 1790
Query 1745 AAACAGACTT-CTAGCTGTTTATTCTCTCaaaaagaa-aaaaaTGAATAACTCTAAATTG 1802
| ||||| |||||||||| |||| |||||||||| |||||| ||||| |||||||||
Sbjct 1791 A----GACTTTCTAGCTGTTT-TTCTTTCAAAAAGAAGAAAAAT-AATAATTCTAAATTG 1844
Query 1803 TGTGCTAATCTTTCTCTGTCTAATAAAATCTGTAATAACATGTTTATTTCT 1853
||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1845 TGTGCTACTCTTTCTTTGTCTAATAAAATCTGTAATAACATGTTTATTTCT 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5