BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477772
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04950.1 | Symbols: | CONTAINS InterPro DOMAIN/s: SEC-C mot... 1225 0.0
> AT3G04950.1 | Symbols: | CONTAINS InterPro DOMAIN/s: SEC-C motif
(InterPro:IPR004027); Has 583 Blast hits to 583 proteins
in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi
- 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source:
NCBI BLink). | chr3:1371705-1373477 FORWARD LENGTH=954
Length=954
Score = 1225 bits (663), Expect = 0.0
Identities = 743/781 (95%), Gaps = 7/781 (1%)
Strand=Plus/Plus
Query 1 AAACCCTAAAACCCTAATTCTTCA-TAAATTAGTTTCCAAAGGC-GTCAATTTTGGGCGG 58
||||||| |||||||||||||||| | |||||||||||||| || || ||||||||||||
Sbjct 21 AAACCCTGAAACCCTAATTCTTCAGT-AATTAGTTTCCAAA-GCAGTTAATTTTGGGCGG 78
Query 59 AAAATGTGGTCTTCGAGAGCTCTCAAGTATATTTTCAGGCTAAGACCTGAACCAATTTCT 118
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 79 AAAATGTGGTCTTCGAGAACTCTCAAGTATATTTTCAGGCTAAGACCTGAACCAATTTCT 138
Query 119 TCTTCATCGTTTTCCGCATATTCGCTATCTCGCATCACCGGTGGTGCTCTAATTCCGTCG 178
|| ||||||| ||| || |||||||| |||||||||||||| ||| ||| ||||||||||
Sbjct 139 TCCTCATCGTCTTCTGCGTATTCGCTCTCTCGCATCACCGGAGGTTCTCCAATTCCGTCG 198
Query 179 CAGCA-C--CGATCGATTACCTCCACGGCGCCGCTTAATGGATGGATGGATTCGATCAAA 235
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CAGCAGCAACGATCGATTACCTCCACGGCGCCGCTTAATGGATGGATGGATTCGATCAAA 258
Query 236 GGCGTTTTTACCGGGAATAAGAATACTCCTTTGGAAGAATCAAATCTACCCGTTGAAGCT 295
|| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 259 GGTGTTTTTACCGGGAACAAGGATACTCCTTTAGAAGAATCAAATCTACCCGTTGAAGCT 318
Query 296 TTCACTCTTCTCCGATTTGCTGATGAATTGAAGAATGCTAGAAGGTTAGGGAAATTCAAG 355
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 319 TTCACTCTTCTCCGATTTGCTGATGAATTGAAGAATGCTAGACGGTTAGGGAAATTCAAG 378
Query 356 CAGTACATTGTGGGTCGAAGCAGCGAGGCTACTTTTTCTGATGCATTTGAGAAACAAGAA 415
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 379 CAGTACATTGTGGGACGAAGCAGCGAGGCCACTTTTGCTGATGCATTTGAGAAACAAGAA 438
Query 416 GCTGTTATTAGGTATCTTGGAGCTCTTGATGCTACAGGAGAGAATCTTCAAGCGAGTCAA 475
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 439 GCTGTTATTAGATATCTTGGAGCTCTTGATGCTACAGGAGAGAATCTCCAAGCGAGTCAA 498
Query 476 AAGCAAGATGCGGCTAAACATTGCAAATGCACGATAACAGATGTGGAGAATACGCTGGCC 535
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 499 AAGCAAGATGCGGCTAAACATTGCAAATGCACTATAACTGATGTGGAGAATACGCTGTCC 558
Query 536 AAGTTTACTTGGGCAAGGCAAGCTCACAAGAAGATGGCAGAGTTGAAAGAAGGAGGCAAA 595
|| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 559 AAATTTACTTGGGCCAGGCAAGCTCACAAGAAGATGACAGAGTTGAAAGAAGGAGGCAAA 618
Query 596 CCGTTACCAAAGAATATGGGAGAGCTGCAAAAAATGATGGGGTCAACACCAATGGATCTT 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CCGTTACCAAAGAATATGGGAGAGCTGCAAAAAATGATGGGGTCAACACCAATGGATCTG 678
Query 656 GCGAGATCAAACTTAGCCAAAAGTGGGCAGATCAGCCGCAATGCACTTTGTCCATGTGGT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 679 GCGAGATCAAACTTAGCCAAAAGTGGGCAGATCAGCCGCAATGCACTTTGTCCCTGTGGT 738
Query 716 TCCAAAAAGAGATATAAAAGATGTTGCGGAAAGGATTGAAGAACACACAAGTTGATCGAA 775
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 739 TCCAAAAAGAGATATAAAAGATGTTGCGGAAAGGATTGAAGAACACAGAAGTTGATCCAA 798
Query 776 A 776
|
Sbjct 799 A 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5