BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477773
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04960.3 | Symbols: | Domain of unknown function (DUF3444) ... 2686 0.0
AT3G05110.1 | Symbols: | Domain of unknown function (DUF3444) ... 121 3e-26
> AT3G04960.3 | Symbols: | Domain of unknown function (DUF3444)
| chr3:1373688-1375850 FORWARD LENGTH=2030
Length=2030
Score = 2686 bits (1454), Expect = 0.0
Identities = 1872/2066 (91%), Gaps = 60/2066 (3%)
Strand=Plus/Plus
Query 1 TTTCTGGTAAAAATGGtctctttctctcttcttttcttcttAATAAGTCTACaaaaacag 60
|||||||||||||| |||||||||||||||| || ||| | | |||||||||||||
Sbjct 1 TTTCTGGTAAAAATTGTCTCTTTCTCTCTTC--TT-TTC-T--T---TCTACAAAAACAG 51
Query 61 aaacaaaaataaaaattaaagctttctcaaaaaaaTCTCACCTTTATCTTCTTCTTCCTC 120
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 52 AAACAAAAATAAAAAGTAAAGCTTTCTCTAAAAAATCTCTCCTTTATCTTCTTCTAGCTC 111
Query 121 -TCTTTGTGCCCTCTTTCAACATTCTGAGTACAGAGAGAACTAAGTTTAGATCCATGGAA 179
|||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 112 TTCTTTGTG-CCTCTTTCACCATGCTGAGTACAGAGAGAACTAAGTTCAGATCCATGGAA 170
Query 180 CCTGCAAATTCTTCACCATTGCCAC--G--A-----G-GC---A---CGC-C-GGAGCAA 221
||||||| ||||||||||||||||| | | | || | ||| | || |||
Sbjct 171 CCTGCAACTTCTTCACCATTGCCACGAGACACGTCGGAGCAGGATCCCGCGCTGGCGCAG 230
Query 222 AGTGAAGATCAGTCTCGAGGAATACTTAGGGTTTCTGCTTATGAGCTTATGGTAGTGGAC 281
|||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 231 AGTGAAGATCAGTCTCAAGGAAGACTTAGGGTTTCTGCTTATGACCTTATGGTAGTAGAC 290
Query 282 AGTGATTTAGAGGGGTTAGACCaaaaaaaGGAGGACATGCGTAAAATGTTTAATCAGATT 341
|||||||||||||| ||||| |||| |||||| || |||||||| || ||| || | |||
Sbjct 291 AGTGATTTAGAGGGATTAGATCAAAGAAAGGAAGAGATGCGTAACATTTTTGATGATATT 350
Query 342 CAGGATAAAACTTCACTAATTCTTCAGTTCTCGCTTAAGTGGGAAGAAATCGACGAGAAG 401
||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 351 CAGGATAAAGCTTCATTAATTCTTCAGTTCTCACTTAAGTGGGAAGAAATCGACGACAGG 410
Query 402 TTTGGTTTTCTAAAGCAACGAGCCATGGAAGTATCTTTGAAGGAGGAATCTGTAAGGAAT 461
|||||||||||||||||||||||||| | | | |||||||| ||||| |||||
Sbjct 411 TTTGGTTTTCTAAAGCAACGAGCCAT-G--G-A-----GAAGGAGGTCTCTGTCCGGAAT 461
Query 462 CAGATTCTggagctggagaagaaggaagagaggctgaggcttgttgaagagagagagagg 521
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 462 CAGATTCTGGAGCTGGAGAAGAAGGAAGAGCGACTGAGGCTTGTTGAAGAAAGAGAGAGG 521
Query 522 gagattgaggCTTCCATCAGTGCCTTGCAGGAGAAAGAAAATGAATCTGATCTGATACTG 581
|||||||||| ||| ||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 522 AAGATTGAGGCATCCTTCAGTACATTGCAGGAGAAAGGAAATGAATCTGATCTGATACTG 581
Query 582 TTTATGGAAGCGAATGTGATGAGATTGGTTCTGCAAATGCAGTTTGAAGAAGTGGTGGTT 641
|| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 582 TTAATGGAAGCGAATGTGATGAGATTGGTTCTTCAAATGCAGTTTGAACAAGTGGTGGTT 641
Query 642 TCTCAGCTTAACGCTCAAGAGAAATTTCTTGGTTTGCTCCATGATTCGGTGATGAAGAAG 701
||||||| ||||| |||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 642 GCTCAGCTCAACGCCCAAGAGAACTTTCTTGGTTCGCTCCATGATTCGATGATGAAGAAG 701
Query 702 CATGAAGAGCTAATGACAGAGCTTGAAGCAAGGAAAAATGAGGTTGCTTTGATTTCTAAG 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CATGAAGAGCTAATGACAGAGCTTGAAGCAAGGAAAAATGAGGTTGCTTTGATTTCTAAG 761
Query 762 ACGATCGATGACAAGACTTGTGATTTAGAGATGAAAGTTAAAGACTTCGATCTTAAGCAA 821
|||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 762 ACGATCGATGCCAAGACTTGTGATTTAGACATGAAAGTCAAAGACTTTGATCTTAAGCAA 821
Query 822 ATAGCTGAGTCTGAGAGAATGAGAAAGGAGACTGAGGTGGTGGAAACATCTCTTAAGCAA 881
| | | |||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 822 ACAACAGAGTCTGAGAGAATGAGAAAAGAGACTGAGCTGATGGAAACATCTCTTAAGCAA 881
Query 882 CTTGAAGCGAGGGAGAATGAGCTTAGGTTGCTTAATGAGACCATCCAAGAGAAATCGATT 941
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 CTTGAAGCCAGGGAGAATGAGCTTAGGTTGCTTAATGAGACCATCCAAGGGAAATCGATG 941
Query 942 GAACTGGagaagaaagaagagaactttcaactgaaacaagaagcagcagccagagagact 1001
|| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 942 GAGCTGGAGAAGAAAGAAGTCAACTTTCAACTGAAACATGAAGCAGCAGCCAGAGAGACT 1001
Query 1002 gaagtgaagaaCAAGTTTCTTGAGTTAAAGGAAAAGAAACTTGAAGAAAGGGAGAAAGGT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1002 GAAGTGAAGAACAAGTTTCTTGAGTTAAAGGAAAAGAAACTTGAAGAAAGGGAGCAACAT 1061
Query 1062 TTGGAGTTAAAACAGAGAGAAATAGAAGAACGAGCAATA-GAAGCAGAGACTCGTAAGAG 1120
|||||||| ||||||||| ||| |||| ||| ||||||| || |||||||||||||||||
Sbjct 1062 TTGGAGTTGAAACAGAGAAAAAAAGAAAAACCAGCAATAAGA-GCAGAGACTCGTAAGAG 1120
Query 1121 AACTAGGCTTGAATATGAGTCTCCATTGTCAACAGAGAAGGGTAGAGATGGTGAGACTCT 1180
| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct 1121 ATCTAGGCTTGAATATGAGTCTCCATTGTCGGCAGAGAAGGGTAGATATGCTGAGACTCT 1180
Query 1181 GATTCTCCCTGGAAAAAAGCAAGTACAGAGAAGAGAGGCTCATGAAGTTGTCTGCATAGA 1240
||||| |||||||||||||||||| |||| |||||||||||||||| || ||| ||| ||
Sbjct 1181 GATTCGCCCTGGAAAAAAGCAAGTGCAGAAAAGAGAGGCTCATGAAATTATCTACATTGA 1240
Query 1241 TGAAGATAAGCCATTCA-CTTGTCCTGATCCAGACTTTCACGATTTTAACAACACAATAA 1299
||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct 1241 TGAAGATGAGCCATTCAACT-GTCCTGATCCAGACTTTCACGATTTTAACAACACAATGA 1299
Query 1300 GCTCTTTCGCTGTTGGTCAAGTATGGGCTCTATATGATCCTATAGATGATATGCCTCGAT 1359
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1300 GCTCTTTCGCTGTAGGTCAAGTATGGGCTCTATATGATCCTGTAGATGATATGCCTAGAT 1359
Query 1360 ACTATGCTCAGATCAGGAAAGTATTGAAACCTCAGCTGGGTTTACGGGTGACATGGCTTG 1419
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 1360 ACTATGCTGAGATCAGGAAAGTATTGCAACCTCAGCTGAGTTTACGGGTGACATGGCTCG 1419
Query 1420 AATCAGTACAGACATCAGAAAACGAGGAACCAATTCCTGCTTGTGGGAGATTCAAACATG 1479
||||| ||||||| || | |||||||||||||||||||||||||||||| ||||||
Sbjct 1420 AATCATTACAGAC--CACA----GAGGAACCAATTCCTGCTTGTGGGAGATTCGAACATG 1473
Query 1480 GAAAACCAGAGTCAGAGACCAGAAGCCACTTGATGTTTTCTCATGAGATGTA-CTGCATC 1538
||||| ||||||||||| ||||||||||||||||||||||||||||| | || |
Sbjct 1474 GAAAA------TCAGAGACCAGTAGCCACTTGATGTTTTCTCATGAGATGTATCA-CACC 1526
Query 1539 AAACGTGGCAAAAATGTCA-TAATAAACCCGAGAAAAGGCGAGACGTGGGCCCTTTTCAG 1597
| ||| ||| || |||||| || |||||||||||||||||||||||||||| |||||| |
Sbjct 1527 ATACGAGGCCAATATGTCACTA-TAAACCCGAGAAAAGGCGAGACGTGGGCACTTTTCGG 1585
Query 1598 AGATTGGACCAAGACTTGGAAGAGTCACAGTGAGCAACACAAGTCTCCTTACAGATACGA 1657
||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct 1586 AGATTGGACCAAGACTTGGAAGAGTCACAGTGAGCAACAAAAGACTCCTTACAGTTACGA 1645
Query 1658 CTTTGTGGAAGTCCTGACTGAATTTGACAGTGATCGAGGCATTGGAGTGGGCT-ATCTAG 1716
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1646 CTTTGTGGAAGTCGTGACTGAATTTGACAGTGATCGAGGCATTGGAGTGG-CTTATCTAG 1704
Query 1717 GAAGAGTGGAGGGATTCACATCATTGTATAAACATGCTGAGCAAAATGGTCTTGTCAAAA 1776
| |||||||| |||||||||||| ||||| ||| ||||| |||||||||||||||| |||
Sbjct 1705 GGAGAGTGGAAGGATTCACATCAGTGTATGAACGTGCTGCGCAAAATGGTCTTGTCGAAA 1764
Query 1777 TTATGATATCATGTGATGAAATGGTTAGGTTTTCTCATAGAGTTCCGTCTTTCAAAATGA 1836
| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1765 TCATGATATCATGTGATGAAATGCTTAGGTTTTCTCATAGAGTTCCATCTTTCAAAATGA 1824
Query 1837 CTGGAGATGATAAAGAAGGAGTCCCAGCTGGCTCTTTTGAGCTAGATCCTGCCGCTGTTC 1896
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1825 CTGGAGATGAGAAAGAAGGAGTCCCAGCTGGCTCTTTTGAGCTAGACCCTGCTGCTGTTC 1884
Query 1897 CTCGAGAGTATCTTAAAGATGCTAATGTCAAAGAAGAAAAGATGGAGCCCATAGTCTTGG 1956
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1885 CTCGAGTTTATCTTAAAGATGCTAAGGTCAAAGAAGAAAAGATGGAGCCCATAGTCTTGG 1944
Query 1957 TTTGAGTTAAGTGCAAGTCTGATGTGTTCACTGTTCTTTATCTATAAAATGTATTTAGAA 2016
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1945 TTTGAGTTAAGTGCAAGTCTGATGTGTTCACTATTCTTTATCTATAAAATGTATTTAGAA 2004
Query 2017 GATGCATGGAACTGTATCTGTATTCC 2042
|||||||||||| | |||||||||||
Sbjct 2005 GATGCATGGAACCGAATCTGTATTCC 2030
> AT3G05110.1 | Symbols: | Domain of unknown function (DUF3444)
| chr3:1426297-1427719 REVERSE LENGTH=1119
Length=1119
Score = 121 bits (65), Expect = 3e-26
Identities = 75/80 (94%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 828 GAGTCTGAGAGAATGAGAAAGGAGACTGAGGTGGTGGAAACATCTCTTAAGCAACTTGAA 887
|||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||
Sbjct 151 GAGTCTGAGAGAATGAGAAAGGAGACTGAGCTGATTGAAACTTCTCTTAAGCAACTTGAA 210
Query 888 GCGAGGGAGAATGAGCTTAG 907
|| |||||||||||||||||
Sbjct 211 GCAAGGGAGAATGAGCTTAG 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101204298720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5