BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477783
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05020.1 | Symbols: ACP1, ACP | acyl carrier protein 1 | chr... 767 0.0
> AT3G05020.1 | Symbols: ACP1, ACP | acyl carrier protein 1 | chr3:1391632-1392954
REVERSE LENGTH=721
Length=721
Score = 767 bits (415), Expect = 0.0
Identities = 474/501 (95%), Gaps = 9/501 (2%)
Strand=Plus/Plus
Query 1 ACGCTCTTTGTACACTCCGCCATCTCTCCCCATCTCTTTCGACAGAtctctctctctctc 60
||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1 ACGCTCTTTGTACACTCCGCCCTCTCTCCCCATCTCTTTCGACAGA----TCTCT-TCTC 55
Query 61 tttctctcGTGTTTCACGAAACAATGGCGACTCAATTCAGCGCTTCTGTCTCCA-TGCAA 119
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 56 --TCTCTCGTGTTTCACGAAACAATGGCGACTCAATTCAGCGCTTCTGTCT-CATTGCAA 112
Query 120 ACTTCTTGTCTGGCAACGACAAGGATTAGTTTCCAAAAGCCAGCATTGATTTCCAACCAT 179
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 113 ACTTCTTGTCTGGCAACAACAAGGATTAGTTTCCAAAAGCCAGCTTTGATTTCCAACCAT 172
Query 180 GGAAGGACTAATCTCTCCTTCAACCTGCGCCGTTCTATCCCATCTCGCCGCCTCTCTGTT 239
|||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 173 GGAAAGACTAATCTATCCTTCAACCTCCGCCGTTCAATCCCATCTCGCCGCCTCTCTGTT 232
Query 240 TCTTGCGCGGCAAAACAAGAGACGATAGAAAAAGTGTCTGAGATAGTGAAGAAGCAACTA 299
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 233 TCTTGCGCGGCAAAACAAGAGACGATAGAGAAAGTGTCTGCTATAGTTAAGAAGCAACTA 292
Query 300 TCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGAT 352
Query 360 TCTCTTGACACGGTTGAGATAGTGATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCT 419
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 353 TCTCTCGACACGGTTGAGATAGTAATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCC 412
Query 420 GAAGAGAAAGCTCAGAAGATTGCCACAGTGGAGCAAGCTGCTGAACTCATCGAAGAGCTC 479
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 413 GAAGAGAAAGCACAGAAGATTGCCACAGTTGAGCAAGCTGCTGAACTCATTGAAGAGCTC 472
Query 480 ATCAAGGAGAAGAAGTAATTT 500
||||| |||||||||||||||
Sbjct 473 ATCAACGAGAAGAAGTAATTT 493
Score = 189 bits (102), Expect = 3e-47
Identities = 157/180 (87%), Gaps = 17/180 (9%)
Strand=Plus/Plus
Query 501 aaaaaaaaaCAGGGCGTTGAGTTTGTTTTCATTATGTTTGA----TC--TC----T-TTT 549
||||||||||||||||||||||||||||||||||||||||| || || | |||
Sbjct 543 AAAAAAAAACAGGGCGTTGAGTTTGTTTTCATTATGTTTGATTTCTCTGTCATTTTCTTT 602
Query 550 -ATGTGTCTAGCGAGTCTGTCTTTGTCCCAATGGTTTAGTATCTGCATTATGTATCCACG 608
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 603 AATGTGTCTAGCGAGTCTGCCTTTGTCCCAATGGTTTAGTATCTGCAT---GTATCCACG 659
Query 609 GATTTCTATTTGTC-ACCGAATATCATTTACAATAAATCTTTCTTATTTTCTTTCCAAGA 667
||| |||||||||| || |||| | ||||||||||| | |||||||||||||||||||||
Sbjct 660 GATCTCTATTTGTCGAC-GAATGTTATTTACAATAAGTGTTTCTTATTTTCTTTCCAAGA 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5