BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477785
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05030.1 | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger... 2630 0.0
AT5G27150.1 | Symbols: NHX1, ATNHX, AT-NHX1, ATNHX1 | Na+/H+ ex... 1458 0.0
> AT3G05030.1 | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger
2 | chr3:1393298-1397358 REVERSE LENGTH=2146
Length=2146
Score = 2630 bits (1424), Expect = 0.0
Identities = 1570/1640 (96%), Gaps = 11/1640 (1%)
Strand=Plus/Plus
Query 1 ATGACAATGTTCGCCTCTTTAACGTCTAAAATGTTATC-GTCGTCAACTTCTGACCACGC 59
||||||||||||||||||||||| ||||||||| |||| || |||||||||||| |||||
Sbjct 348 ATGACAATGTTCGCCTCTTTAACCTCTAAAATGCTATCGGT-GTCAACTTCTGATCACGC 406
Query 60 CTCTGTGGTTTCACTCAATCTCTTTGTTGCCCTTCTATGTGCTTGTATCGTGATTGGGCA 119
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 407 ATCTGTCGTTTCACTTAATCTCTTTGTTGCCCTTCTATGTGCTTGTATCGTCATTGGCCA 466
Query 120 TCTTCTGGAGGAGAATCGATGGATGAACGAATCTATCACAGCTTTATTGATTGGGCTTTG 179
|||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 467 TCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACTGCTTTATTGATTGGGCTTGG 526
Query 180 CACTGGTGTCGTCATTTTGTTGATTAGTAGAGGGAAAAACTCACATCTGTTGGTCTTCAG 239
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 527 CACTGGTGTCGTCATATTGTTGATTAGTAGAGGGAAAAACTCACATCTCTTGGTCTTTAG 586
Query 240 CGAAGATCTTTTCTTTATATATCTTTTGCCACCCATAATATTCAATGCAGGATTTCAAGT 299
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 587 TGAAGATCTCTTCTTTATATATCTTTTGCCACCCATAATATTCAATGCAGGGTTTCAAGT 646
Query 300 AAAAAAGAAGCAATTTTTCCGAAATTTTGTAACTATCATGGCTTTTGGCGCCATCGGGAC 359
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 647 AAAAAAGAAGCAGTTTTTCCGAAATTTTGTAACTATTATGGCTTTTGGCGCCATTGGGAC 706
Query 360 CGTAGTTTCTTGCACCATAATATCTCTCGGTGCAATTCAGTTCTTTAAGAAATTAGACAT 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 707 CGTAGTTTCTTGCACCATAATATCTCTAGGTGCAATTCAGTTCTTTAAGAAATTAGACAT 766
Query 420 TGGGACCTTTGACTTAGGCGATTTTCTTGCAATCGGCGCCATATTTGCTGCAACCGACTC 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGGGACCTTTGACTTGGGCGATTTTCTTGCAATCGGCGCCATATTTGCTGCAACCGACTC 826
Query 480 TGTATGCACCCTGCAGGTTCTCAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTCTT 539
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 827 TGTATGCACACTACAGGTTCTCAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATT 886
Query 540 TGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTCAGAGCTT 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 887 TGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAATGCTATTCAGAGTTT 946
Query 600 TGACCTCACCCACCTCAACCATGAAGCAGCTTTTCAATTTCTTGGGAACTTCTTCTATCT 659
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 947 TGACCTCACCCACCTTAACCATGAAGCAGCTTTTCAATTTCTTGGGAACTTTTTTTATCT 1006
Query 660 GTTTCTCTTGAGCACCGTACTTGGTGTCGCAACTGGTCTGATAAGTGCTTATGTCATCAA 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GTTTCTCTTGAGCACCGGACTTGGTGTCGCAACTGGTCTGATAAGTGCTTATGTCATCAA 1066
Query 720 GAAGCTATATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCCCTCATGATGCTTATGGC 779
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GAAACTGTATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCCCTCATGATGCTTATGGC 1126
Query 780 ATATCTTTCATACATGCTTGCTGAGCTATTCGCCTTGAGTGGTATTCTAACTGTATTTTT 839
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1127 TTATCTTTCATATATGCTTGCTGAGCTATTCGCCTTGAGTGGTATCCTAACTGTATTTTT 1186
Query 840 CTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTAACCGAGAGCTCAAGAATTAC 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1187 CTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTCACCGAGAGCTCAAGAATTAC 1246
Query 900 TACCAAGCATGCCTTTGCTACTTTGTCATTTCTTGCTGAAACTTTTATTTTCCTCTACGT 959
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1247 TACCAAGCATGCCTTTGCTACTTTGTCGTTTCTCGCTGAGACTTTTATTTTCCTCTACGT 1306
Query 960 TGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGTGACAGCCCGGGGACATC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGTGACAGCCCGGGGACATC 1366
Query 1020 AGTTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTGGAAGAGCAGCTTTTGTCTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AGTTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTGGAAGAGCAGCTTTTGTCTT 1426
Query 1080 TCCTCTTTCCTTCTTATCAAACTTAGCCAAGAAGAATCAGAGCGAGAAAATCAACATCAA 1139
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1427 TCCTCTTTCCTTCTTATCAAACTTAGCCAAGAAGCATCAGAGCGAGAAAATCAGCATCAA 1486
Query 1140 GCAGCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAGGTGCTGTATCTATGGCTCTTGC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GCAGCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAGGTGCTGTATCTATGGCTCTTGC 1546
Query 1200 CTACAATAAGTTTACAAGATCAGGGCACACAGAATTGCGCGGGAATGCAATCATGATTAC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CTACAATAAGTTTACAAGATCAGGGCACACAGAATTGCGCGGGAATGCAATCATGATTAC 1606
Query 1260 CAGTACTATAACCGTCTGTCTTTTTAGCACCATGGTGTTTGGTATGCTGACCAAACCGCT 1319
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1607 CAGTACAATAACCGTCTGTCTTTTTAGCACCATGGTGTTTGGTATGCTAACCAAACCACT 1666
Query 1320 GATAAGATACCTAATGCCACATCAAAAAGCGACCAC--G-A----G--TATGTTATCCGA 1370
||| ||||||||||||||||| |||||||||||||| | | | ||||||||| ||
Sbjct 1667 GATTAGATACCTAATGCCACACCAAAAAGCGACCACCAGTACCACGAGTATGTTATCGGA 1726
Query 1371 CGATAACACTCCGAAATCAATCCACATTCCGCTCCTCGATGGCGAACAGCTAGATTCATT 1430
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1727 CGATAGCACTCCGAAATCAATCCACATTCCGCTCCTCGATGGTGAACAGCTAGATTCATT 1786
Query 1431 TGAGTTACCTGGGAGCCACCAGGACGTGCCACGACCAAATAGCCTTAGAGGTTTCCTCAT 1490
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1787 TGAGTTACCTGGGAGCCACCAGGACGTGCCACGACCAAACAGCCTTCGAGGTTTCCTCAT 1846
Query 1491 GCGCCCCACACGCACTGTCCACCATTACTGGAGACAGTTTGATGATGCCTTCATGCGTCC 1550
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1847 GCGCCCCACACGGACTGTCCACTATTACTGGAGACAGTTTGATGATGCCTTCATGCGTCC 1906
Query 1551 TGTGTTTGGTGGTCGCGGTTTCGTTCCGTTTGTCCCTGGTTCTCCGACTGAGAGAAGCAC 1610
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1907 TGTGTTTGGTGGTCGCGGATTCGTTCCCTTTGTCCCTGGTTCTCCGACTGAGAGAAGCAG 1966
Query 1611 CCATGATCTCAGTAAACCTT 1630
||||||||| ||||||||||
Sbjct 1967 CCATGATCTTAGTAAACCTT 1986
> AT5G27150.1 | Symbols: NHX1, ATNHX, AT-NHX1, ATNHX1 | Na+/H+
exchanger 1 | chr5:9553438-9557513 FORWARD LENGTH=2334
Length=2334
Score = 1458 bits (789), Expect = 0.0
Identities = 1336/1597 (84%), Gaps = 49/1597 (3%)
Strand=Plus/Plus
Query 49 TCTGACCACGCCTCTGTGGTTTCACTCAATCTCTTTGTTGCCCTTCTATGTGCTTGTATC 108
||||| ||||| ||||||||| | | |||||||||||||| ||||| |||||||||||
Sbjct 513 TCTGATCACGCTTCTGTGGTTGCGTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATT 572
Query 109 GTGATTGGGCATCTTCTGGAGGAGAATCGATGGATGAACGAATCTATCACAGCTTTATTG 168
|| |||| |||||| |||| |||||| |||||||||||||||| ||||| || || |||
Sbjct 573 GTTCTTGGTCATCTTTTGGAAGAGAATAGATGGATGAACGAATCCATCACCGCCTTGTTG 632
Query 169 ATTGGGCTTTGCACTGGTGTCGTCATTTTGTTGATTAGTAGAGGGAAAAA-CTCACATCT 227
|||||||| |||||||||| ||||||||||||||||| | ||||||| ||| |||||
Sbjct 633 ATTGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTA-AAGGAAAAAGCTCGCATCT 691
Query 228 GT-TGGTCTTCAGCGAAGATCTTTTCTTTATATATCTTTTGCCACCCATAATATTCAATG 286
| | ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 692 -TCTCGTCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATTATATTCAATG 750
Query 287 CAGGATTTCAAGTAAAAAAGAAGCAATTTTTCCGAAATTTTGTAACTATCATGGC-TTTT 345
|||| |||||||||||||||||||| |||||||| ||||| || ||||| || || ||||
Sbjct 751 CAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTCCGCAATTTCGTGACTATTAT-GCTTTTT 809
Query 346 GGCGCCATCGGGAC-CGTAGTTTCTTGCACCATAATATCTCTCGGTGCAATTCAGTTCTT 404
|| || | ||||| || |||||||||| || |||||||| |||| || ||||||||
Sbjct 810 GGTGCTGTTGGGACTATTA-TTTCTTGCACAATCATATCTCTAGGTGTAACACAGTTCTT 868
Query 405 TAAGAAATTAGACATTGGGACCTTTGACTTAGGCGATTTTCTTGCAATCGGCGCCATATT 464
|||||| || |||||||| ||||||||||| || |||| |||||| || || ||||||||
Sbjct 869 TAAGAAGTTGGACATTGGAACCTTTGACTTGGGTGATTATCTTGCTATTGGTGCCATATT 928
Query 465 TGCTGCAACCGACTCTGTATGCACCCTGCAGGTTCTCAATCAAGATGAGACACCTTTGCT 524
||||||||| || || ||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 929 TGCTGCAACAGATTCAGTATGTACACTGCAGGTTCTGAATCAAGACGAGACACCTTTGCT 988
Query 525 TTACAGTCTTGTCTTTGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAA 584
|||||||||||| || |||||||| |||||||||||||| || || |||||| |||||||
Sbjct 989 TTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCAACGTCAGTTGTGGTCTTCAA 1048
Query 585 TGCAATTCAGAGCTTTGACCTCACCCACCTCAACCATGAAGCAGCTTTTCAAT-TTCTTG 643
|| |||||||||||||| ||||| ||||| ||||| ||||| ||||||| || ||||||
Sbjct 1049 CGCGATTCAGAGCTTTGATCTCACTCACCTAAACCACGAAGCTGCTTTTC-ATCTTCTTG 1107
Query 644 GGAACTTCTTCTATCTGTTTCTCTTGAGCACCGTACTTGGTGTC-GCAACTGGTCTGATA 702
| |||||||| ||| |||||||| | || ||| | ||||||| | ||||| |||||||||
Sbjct 1108 GAAACTTCTTGTATTTGTTTCTCCTAAGTACCTTGCTTGGTG-CTGCAACCGGTCTGATA 1166
Query 703 AGTGCTTATGTCATCAAGAAGCTATATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCC 762
||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 1167 AGTGCGTATGTTATCAAGAAGCTATACTTTGGAAGGCACTCAACTGACCGAGAGGTTGCC 1226
Query 763 CTCATGATGCTTATGGCATATCTTTCATACATGCTTGCTGAGCTATTCGCCTTGAGTGGT 822
|| |||||||||||||| |||||||| || |||||||||||||| |||| |||||| |||
Sbjct 1227 CTTATGATGCTTATGGCGTATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGCGGT 1286
Query 823 ATTCTAACTGTATTTTTCTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTAACC 882
|| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1287 ATCCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAATGTAACG 1346
Query 883 GAGAGCTCAAGAATTACTACCAAGCATGCCTTTGCTACTTTGTCATTTCTTGCTGAAACT 942
|||||||||||||| || || |||||| ||||||| ||||||||||||||||| || ||
Sbjct 1347 GAGAGCTCAAGAATAACAACAAAGCATACCTTTGCAACTTTGTCATTTCTTGCGGAGACA 1406
Query 943 TTTATTTTCCTCTACGTTGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGT 1002
||||||||| | || |||||||||||||| |||||||| || || ||||||| |||||||
Sbjct 1407 TTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTGAGT 1466
Query 1003 GACAGC-CCGGGGACATCAG-TTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTG 1060
|||| | ||||| ||||| | | |||||||||||||| ||||||||||| |||||| |||
Sbjct 1467 GACA-CACCGGGAACATC-GATCGCAGTGAGCTCAATCCTAATGGGTCTGGTCATGGTTG 1524
Query 1061 GAAGAGCAGCTTTTGTCTTTCCTCTT-TC-CTTCTTATCAAACTTAGCCAAGAAGAATCA 1118
|||||||||| || |||||||| || || ||| |||| ||||||||||||||||||||
Sbjct 1525 GAAGAGCAGCGTTCGTCTTTCC-GTTATCGTTTC-TATCTAACTTAGCCAAGAAGAATCA 1582
Query 1119 GAGCGAGAAAATCAACATCAAGCA-GCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAG 1177
||||||||||||||| | || || ||| |||||||| |||||| ||||||| |||||||
Sbjct 1583 AAGCGAGAAAATCAACTTTAA-CATGCAGGTTGTGATTTGGTGGTCTGGTCTCATGAGAG 1641
Query 1178 GTGCTGTATCTATGGCTCTTGCCTACAATAAGTTTACAAGATCAGGGCACACAGAAT-TG 1236
|||||||||||||||||||||| ||||| ||||||||||| | ||||||||||| | |
Sbjct 1642 GTGCTGTATCTATGGCTCTTGCATACAACAAGTTTACAAGGGCCGGGCACACAGA-TGTA 1700
Query 1237 CGCGGGAATGCAATCATGATTACCAGTACTATAACCGTCTGTCTTTTTAGCACCA-TGGT 1295
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||| | ||||
Sbjct 1701 CGCGGGAATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCAC-AGTGGT 1759
Query 1296 GTTTGGTATGCTGACCAAACCGCTGATAAGATACCTAATGCCACATCAAAAAGCGACCAC 1355
||||||||||||||||||||| || ||||| |||||| | || || || || || |||||
Sbjct 1760 GTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAGAACGCCACCAC 1819
Query 1356 GAGTATGTTATCCGACGATAACACTCCGAAATCAATCCACATTCCGCTCCTCGATGG-CG 1414
||| |||||||| || || ||||| || ||||| || || || || || | | ||| |
Sbjct 1820 GAGCATGTTATCTGATGACAACACCCCAAAATCCATACATAT-CC-CTT-T-GTTGGACC 1875
Query 1415 AACAGCTAGATTCATTTGAG--TTACCTGGGAGCCACCAGGACGTGCCACGACCAAATAG 1472
|| | || | |||||| ||| || | |||| |||| | | ||||| || || | ||
Sbjct 1876 AAGA-CTCG-TTCATT-GAGCCTT-CA-GGGAACCAC-A--ATGTGCCTCGGCCTGACAG 1927
Query 1473 CCTTA-GAGGTTTCCTCATGCGCCCCACACGCACTGTCCACCATTACTGGAGACAGTTTG 1531
| | | || ||| | | || ||||| || || || || | ||||||||||| ||||
Sbjct 1928 TAT-ACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGGAGACAATTTG 1986
Query 1532 ATGA-TGCCTTCATGCGTCCTGTGTTTGGTGGTCGCGG-TTTCGTTCCGTTTGTCCCTGG 1589
|||| | |||||||||| || || ||||| ||||| || ||| || || ||||| || ||
Sbjct 1987 ATGACT-CCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTT-GTACCCTTTGTTCCAGG 2044
Query 1590 TTCTCCGACTGAGAGAAGCAC-CCATGATCTCAGTAA 1625
|||||| |||||||||| | | || |||||| |||||
Sbjct 2045 TTCTCCAACTGAGAGAAACCCTCC-TGATCTTAGTAA 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5