BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477790
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05070.1 | Symbols: | CONTAINS InterPro DOMAIN/s: mRNA spli... 1122 0.0
> AT3G05070.1 | Symbols: | CONTAINS InterPro DOMAIN/s: mRNA splicing
factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits
to 292 proteins in 153 species: Archae - 0; Bacteria - 0;
Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other
Eukaryotes - 42 (source: NCBI BLink). | chr3:1416148-1417806
FORWARD LENGTH=804
Length=804
Score = 1122 bits (607), Expect = 0.0
Identities = 707/754 (94%), Gaps = 12/754 (2%)
Strand=Plus/Plus
Query 19 TTTGTCTGGGATTTATAGAGCTCGAAGCTTCAAGGAAG-T-T-ATGGCTAGTGAAGATGA 75
||||||| | |||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 54 TTTGTCTCGAATTTATAGAGCTCGAAGCTTCAAGGAAGTTATAATGGCTAGTGAAGATGA 113
Query 76 ATCGATAGAACAAAAAGCTGCTGCTCGTAAAGAGGCACTTAAAGCTCTAAGGGCAGCTCA 135
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ATCGATTGAACAAAAAGCTGCTGCTCGTAAAGAGGCACTTAAAGCTCTAAGGGCAGCTCA 173
Query 136 GGAACTGTCTGAGACCAAGGAGGACGGAGAGGATGAAGCTGTCGAAGAAGATGGTCCAGC 195
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 174 GGAACTGTCTGAGACCAAGGAAGACGGAGAGGATGAAGCTGTCGAAGAAGATGGTCCAGC 233
Query 196 CATGAAGTTTAGAAACTATGTTCCCCAAGCTAAGGAGCTTCAGGATGGTAAACTTGCCCC 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 234 CATGAAGTTTAGAAACTATGTTCCCCAAGCTAAGGAGCTTCAGGATGGTAAACTAGCGCC 293
Query 256 ACCAGAGTTACCCAAATTCGAAGATCCGATTC-TTGCACTTCCACCTGCTGTGGAGAAGA 314
||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 294 ACCAGAGCTACCCAAATTCGAAGATCCGAT-CGTTGCACTTCCACCTGCTGTAGAGAAGA 352
Query 315 AAGAGGACCCATTTGTTAACATCGCTCCAAAGAAGCCGAACTGGGACCTCCGAAGAGATG 374
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 353 AAGAGGACCCATTTGTTAACATCGCTCCAAAGAAGCCAAACTGGGACCTCCGAAGAGATG 412
Query 375 TGCAGAAGAAGCTTGATAAGCTTGAAAGGCGGACCCAAAAGGCAATGTATAAACTCATGG 434
|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 413 TGCAGAAGAAGCTTGATAAGCTCGAAAGGCGGACTCAAAAGGCAATGCATAAACTCATGG 472
Query 435 AGGAGCATGAGAAAGAACGTGAGATGGCTGAAGCTGATGGTAACACCATAGAAAGTTGAA 494
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AGGAGCAAGAGAAAGAACGTGAGATGGCTGAAGCTGATGGTAACACCATAGAAAGTTGAA 532
Query 495 ACCTGACGACACCATCAAAGAAA-CCACCACCGAACATTATATTCTACTCAATTTTGTAT 553
||| ||||| ||||||||||| ||||||| ||||| |||||||||||| ||||||| |
Sbjct 533 ACCCAACGACGTCATCAAAGAAAGCCACCACTGAACAGTATATTCTACTCGATTTTGTTT 592
Query 554 AACTGTTTAAGCATTCAAAGTGACTAGACCATGTAAAACCCTACTGCCATTGGCATAGAC 613
||||||| |||||||| |||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 593 AACTGTTAAAGCATTCGAAGTGAGTAGACCATGTAAAATCCTACAGCCATTGGCATAGAC 652
Query 614 ATAGTAGGTTTATGTTCTTGTGTGAAGaaaaaaaaaGTCGCAATTTATT-CTGAGTAGAA 672
||||||||||||| |||||||||||| ||| ||| ||||||||||||| | ||||||||
Sbjct 653 ATAGTAGGTTTATCTTCTTGTGTGAATCAAAGAAA-GTCGCAATTTATTTCCGAGTAGAA 711
Query 673 TTAAGTGTGGTCC--TTTCTCT-TAAATTTGGTTCAACATCGGTGTTAATCTAGTTTGAT 729
||||||| ||||| ||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 712 TTAAGTGCGGTCCGGTTTTTCTCTAAATTTGGTTCAACATCGGTGGTAATCTAGTTTGAT 771
Query 730 CAGTAATTGGAACTGCGTTTTTTGGTTTGATTCG 763
|| |||| ||||||||||||||||||||||||||
Sbjct 772 CATTAAT-GGAACTGCGTTTTTTGGTTTGATTCG 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5