BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477791
Length=3029
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05090.1 | Symbols: LRS1 | Transducin/WD40 repeat-like super... 4034 0.0
AT3G05080.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 484 2e-135
> AT3G05090.1 | Symbols: LRS1 | Transducin/WD40 repeat-like superfamily
protein | chr3:1418261-1423664 REVERSE LENGTH=2966
Length=2966
Score = 4034 bits (2184), Expect = 0.0
Identities = 2447/2567 (95%), Gaps = 46/2567 (2%)
Strand=Plus/Plus
Query 1 CTGATTTTACCAAG--T--CTC--GAGCCTTTGAGAGAAGAGAGTTTTGTGGTTTCCTTG 54
|||||||||||||| | ||| ||||||||||||| | |||| ||||| |||| |||
Sbjct 4 CTGATTTTACCAAGTCTCGCTCGAGAGCCTTTGAGAG-A-AGAG-TTTGT-GTTT-CTT- 57
Query 55 AAGGaaaaaaaaaaaaC-ACtttttttttG----GT-TTCTTC-T--TCATCTTCTTCCA 105
|||| ||||||||| || |||||||||| | |||||| | || ||||||||||
Sbjct 58 AAGG-AAAAAAAAACACTTTTTTTTTTTTGTTTCTTCTTCTTCTTCGTCTTCTTCTTCCA 116
Query 106 ATTCTCCAAACGCCATCACGCCTTTGGAAAAAAGGCTGCTC---TTTGTTTGTCCGTCTT 162
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 117 ATTCTCCAAACGCCATCACGCCTTTGG-AAAAAGGCTGCTCTTTTTTGTTTGTCCTTCTT 175
Query 163 GACTCTTCAATT-AA------TAAT-TTTTCCAAATTTGTGCT---AACTTTCGACTTTC 211
||||||| |||| || | || |||||||||||||||| ||||||||||||||
Sbjct 176 GACTCTTAAATTAAATTTTGCTCATAATTTCCAAATTTGTGCTAAAAACTTTCGACTTTC 235
Query 212 TAGATCAATCCGATTCCCAAATCTCGTTATTCACTCCCGCGCCCAACGATCGATTCTAGG 271
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 236 TAGATCAATCCGATTCCCAAATCTCGTTATTCACTCCCGCCCCCAACGAGCGATTCTAGG 295
Query 272 GTTTCTCTGTGTGTGTTTTGGGTTGCTGAATCACGTTGTTACTATCATCGATTTCATCTC 331
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 296 GTTTCTCTCTGTGTGTTTTGGGTTGCTGAATCACCTTGTTACTATCATCGATTTCATCTG 355
Query 332 AAGTTCAGATTTTTAAAGCCTTTCAGGATACTTTGAAATGCACCGGGTTGGAAGTGCCGG 391
||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 356 AAGTTGAGATTTTTAAAGGCTTTCAGAATAATTTGAAATGCACCGGGTTGGAAGTGCCGG 415
Query 392 CAGTAATGGCGGTTCTGTTCGCACTCGCAAAGAGAAAAAGCTTACCTATGTATTAAATGA 451
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 416 CAGTAATGGCGGTTCTGTTCGCACTCGCAAAGAGAAAAAGCTTACTTATGTGTTAAATGA 475
Query 452 TGCCAACGACACAAAGCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTAT 511
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 476 TGCCAACGATACAAAGCATTGTGCTGGCATAAATTGCTTGGATGTGTTGAAGTCGTCTGT 535
Query 512 TTCTAATGATCAAAGCTACCTCTTCACTGGAAGTCGTGATGGTACACTCAAGAGATGGGC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTCTAATGATCAAAGCTACCTCTTCACTGGAAGTCGTGATGGTACACTCAAGAGATGGGC 595
Query 572 ATTTGACGAGGATGCAACCTTTTGCTCAGCTACGTTTGAGTCTCATGTTGACTGGGTGAA 631
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 596 ATTTGACGAGGATGCGACCTTCTGCTCAGCTACATTTGAGTCTCATGTTGACTGGGTGAA 655
Query 632 CGACGCTGCTCTGGCTGGTGAAAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAA 691
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGACGCTGCTCTGGCTGGTGAGAGCACTCTTGTTTCTTGTTCTTCAGACACTACGGTCAA 715
Query 692 GACATGGGACAGTTTATCAGATGGAGTCTGTACGAGGACCCTCCGTCAGCATTCTGACTA 751
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 GACATGGGACGGTTTATCAGATGGAGTCTGTACGAGGACTCTCCGTCAGCATTCTGACTA 775
Query 752 TGTTACTTGTTTGGCAGTTGCTGCAAAAAATAGTAATCTTGTTGCATCTGGTGGCCTTGG 811
||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct 776 TGTTACTTGTTTGGCAGTTGCGGCAAAAAATAATAATGTTGTTGCATCTGGTGGCCTTGG 835
Query 812 TGGGGAGGTTTTTATATGGGATATCGAAGCTGCTTTGTCACCAGTTACAAAACCTAATGA 871
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 836 TGGGGAGGTTTTTATATGGGATATTGAAGCTGCTTTGTCACCAGTTACCAAACCTAATGA 895
Query 872 TGCTAATGAAGATAGTTCTTCTTCAAATGGTGCAAAT-GTACCTGTTACAAGTTTAAGAA 930
|||||||||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct 896 CGCTAATGAAGATAG---TTCTTCAAATGGTGCAAATGGT-CCTGTTACAAGTTTAAGAA 951
Query 931 CTGTTGGTTCGAGCAACAATATTTCTGTGCAGTCATCTCCATCTCATGGGTACACACCAA 990
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 952 CTGTTGGTTCAAGCAACAATATCTCTGTGCAGTCATCTCCATCTCATGGGTACACACCAA 1011
Query 991 CAATTGCCAAAGGCCATAAGGAGTCTGTGTATGCTTTGGCGATGAATGATACCGGAACGA 1050
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CAATTGCGAAAGGCCATAAGGAGTCTGTGTATGCTTTGGCGATGAATGATACCGGAACGA 1071
Query 1051 TGCTCGTCTCTGGTGGAACAGAGAAGGTTTTACGTGTCTGGGACCCTAGAACCGGTTCAA 1110
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1072 TGCTCGTTTCTGGTGGAACAGAAAAGGTTTTACGTGTCTGGGACCCTAGAACCGGTTCAA 1131
Query 1111 AGAGTATGAAGCTGAGGGGGCATACAGATAATGTCAGAGTGCTGCTTCTGGACTCAACTG 1170
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1132 AGAGTATGAAGCTGAGAGGGCATACAGATAATGTTAGAGTGCTGCTTCTGGACTCAACTG 1191
Query 1171 GCAGGTTTTGCTTGTCTGGGTCCTCTGATTCTATGATAAGACTATGGGATCTAGGTCAGC 1230
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCAGGTTTTGCTTGTCTGGGTCGTCTGATTCTATGATAAGACTATGGGATCTAGGTCAGC 1251
Query 1231 AGCGTTGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGC-ACT 1289
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1252 AGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAAC- 1310
Query 1290 CCATCATTTAGTCATGTTTATAGCGGTGGAAGAGACCAATGTTTATACTTGACAGACTTG 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CCATCATTTAGTCATGTTTATAGCGGTGGAAGAGACCAATGTTTATACTTGACAGACTTG 1370
Query 1350 GCAACAAGGGAGAGTGTTTTGCTGTGCACTAAGGAACATCCAATTCAGCAATTAGCGTTG 1409
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1371 GCAACAAGGGAGAGTGTTTTGCTGTGCACTAAGGAACATCCAATTCAACAATTAGCGTTG 1430
Query 1410 CAAGATAATAGTATATGGGTTGCAACTACAGACTCCTCTGTAGAGAAATGGCCTGCCGAA 1469
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1431 CAAGATAATAGTATATGGGTTGCAACTACAGACTCCTCTGTAGAGAGATGGCCTGCCGAA 1490
Query 1470 GTACAGAGTCCTCAAAA-GGTCTTTCAACGAGGTGGCTCTTTCTTGGCTGGGAATTTGTC 1528
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1491 GTACAGAGTCCT-AAAACGGTCTTTCAACGAGGTGGCTCCTTCTTGGCTGGGAATTTGTC 1549
Query 1529 TTTTAATAGGGCGAGGGTGTCTTTGGAAGGGCTAAATCCACCCCCTGCCTACAAGGAGCC 1588
|||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 1550 TTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCAGCCCCTGCATACAAGGAGCC 1609
Query 1589 GTCAATAACTGTTCCAGGAACTCACCCGATTGTGCAACATGAGATTTTGAATAATAAAAG 1648
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GTCAATAACTGTCCCAGGAACTCACCCGATTGTGCAACATGAGATTTTGAATAATAAAAG 1669
Query 1649 GCAAATTTTAACCAAGGACGCAGCTGGCTCAGTGAAACTATGGGATATGACTAGGGGTGT 1708
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1670 GCAAATTTTAACCAAGGACGCAGCTGGCTCAGTGAAACTATGGGATATAACTAGGGGTGT 1729
Query 1709 TGTGGTAGAGGACTATGGAAAGATTTCATTTGAAGAGAAGAAAGAAGAACTGTTTGAGAT 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TGTGGTAGAGGACTATGGAAAGATTTCATTTGAAGAGAAGAAAGAAGAACTGTTTGAGAT 1789
Query 1769 GGTAAGCATTCCATCATGGTTTACTGTGGATACACGACTTGGATGCTTATCTGTACATTT 1828
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GGTAAGCATTCCATCGTGGTTTACTGTGGATACACGACTTGGATGCTTATCTGTACATTT 1849
Query 1829 GGAGACTCCACAATGCTTCTCTGCTGAGATGTATTCAGCAGACCTCAAAGTTTCTGGGCG 1888
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1850 GGAGACTCCACAATGCTTCTCTGCTGAAATGTATTCAGCAGACCTTAAAGTTTCTGGGCG 1909
Query 1889 ACCTGAAGATGATAAGATTAATCTAGCTCGTGAAACACTGAAAGGTCTGCTGGGTCACTG 1948
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1910 ACCTGAAGATGATAAGATTAATCTAGCTCGTGAAACACTGAAAGGCCTGCTGGGTCACTG 1969
Query 1949 GCTGGCAAAAAAGAAGCACAAACCCAAACCCCAAGTTCTTACCTCTGGAGATACTTTATC 2008
||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1970 GCTGGCAAAGAAGAAACACAAACCAAAACCCCAAGTTCTTGCCTCTGGAGATACTTTATC 2029
Query 2009 TGTAAAAGATACCaaaaaaaaTCTAAGTGCATCAAAAGCTGAAGACAGTAGTGCTGCATG 2068
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 2030 TGTAAAAGATACCAAAAAAAATCTAAGTGCATCAAAAACTGAAGAGAGTAGTGCTGCAAG 2089
Query 2069 TGATCCGGTGTATCCTCCATTCGAGTTTTCTTCCGTCTCCCCTCCTTCCATCATAACCGA 2128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2090 TGATCCGGTGTATCCTCCATTCGAGTTTTCTTCCGTCTCCCCTCCTTCCATCATAACTGA 2149
Query 2129 GGGTTCTCAAGGAGGACCATGGAGGAAGAAGATAACCGAGTATACTGGAACTGAAGATGA 2188
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2150 GGGTTCTCAAGGAGGACCATGGAGGAAGAAGATAACCGAGTTTACTGGAACTGAAGATGA 2209
Query 2189 GAAGGACTTCCCATTGTGGTGCTTGGATGCTGTCTTGAACAATCGTCTTCCACCTAGAGA 2248
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2210 GAAGGACTTCCCATTGTGGTGCTTGGACGCTGTCTTGAACAATCGGCTTCCACCTAGAGA 2269
Query 2249 AAATACAAAATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCTGTGCAGGTGGTTAC 2308
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2270 AAATACAAAATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTAC 2329
Query 2309 ACTAGGGAAACTTAGTGCACCCCGGATCTTAAGAGTTCACAAGGTTACCAATTACGTTGT 2368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 ACTAGGGAAACTTAGTGCACCCCGGATCTTAAGAGTTCACAAGGTTACCAATTACGTTGT 2389
Query 2369 GGAAAAGATGGTCCTTGACAATCCGTTGGACAGTCTAGCTCTTGATGGAACAAGTGTTTC 2428
|||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 2390 GGAAAAGATGGTCCTTGACAATCCGTTGGATAGTCTAGCTATTGATGCAGCAAGTGTTTC 2449
Query 2429 AGGAGGACAACCTCAGCCACTGTTTGCAGGAAATGGATTGTTACAGTCTGGATTAAAGCC 2488
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2450 AGGAGGACAACCTCAGCCACTGTTTTCAGGAAATGGATTGTTACAGTCTGGATTAAAGCC 2509
Query 2489 TTGGCAGAAACTTAGACCTTCCATTGAGATCTTATGTAATAACCAGG 2535
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2510 TTGGCAGAAACTTAGACCTTCCATTGAGATCTTATGTAATAGCCAGG 2556
Score = 182 bits (98), Expect = 2e-44
Identities = 104/107 (97%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 2568 GTCTTGTCTCCAGATATGAGTTTAGCAACTGTACGGGCATATATATGGAAGAAACCTGAG 2627
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2556 GTCTTATCTCCAGATATGAGTTTAGCAACTGTACGGGCATATGTATGGAAGAAACCTGAG 2615
Query 2628 GATCTAATTCTCAACTACAGAGTGGCTATAGCTAGATAACTTTTGAG 2674
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2616 GATCTGATTCTCAACTACAGAGTGGCTATAGCTAGATAACTTTTGAG 2662
> AT3G05080.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:1417907-1418280 FORWARD LENGTH=374
Length=374
Score = 484 bits (262), Expect = 2e-135
Identities = 322/349 (92%), Gaps = 11/349 (3%)
Strand=Plus/Minus
Query 2673 AGATTGGGATCTGTCTGCTGGTGCATTTAATCACATGGAAGTCTATAGCTTTTCATTGAT 2732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 344 AGATTGGGATCTGTCTGCTGGTGCATTTAATCACATGGAAGTCTATAGCTTTTCATTGCT 285
Query 2733 T-TTCCTTTCAAAAAGCATAGATCTTGGTTTACCTTGGCCTAGTGTTTTACTCAGCTTCT 2791
| |||||| | ||||||||| ||||||||||||||||||||||||||| ||| |||||||
Sbjct 284 TGTTCCTT-CGAAAAGCATATATCTTGGTTTACCTTGGCCTAGTGTTT-ACTTAGCTTCT 227
Query 2792 GTTCATTGGAGCTTGAAGTCATGAGAAGTGGGCACCAATAAAGGTCCAAGAT-TTTAGGT 2850
||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 226 CTTCTTTGGAGCTTGGATTCATGAGAAGTGGGCACCAATAAAGGTCCAAGATATTTAGGT 167
Query 2851 GAGATGGTGTCGAAAACTTTACTGAATTTGTACATTAGGTTTGAGCTTTGCAAAACaaaa 2910
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 166 GAGATGGTGTCGAAAGCTTTACTGAATTTGTACATTAGGTTTGAGCTTTGGAAAACAAAA 107
Query 2911 aaaaTACTTAGTATCTATTTTTGATTGTTCCCTAATAAATAAACCAATGTTGTATCTAAA 2970
||| |||||||||||||||||||||||| || ||| ||||| ||| |||||||||||
Sbjct 106 AAA---CTTAGTATCTATTTTTGATTGTTCGGTATTAA-TAAACAAATATTGTATCTAAA 51
Query 2971 CTCC-TACATCC-ACTGTGGAAGCAACATGCCGAGAAGAAAGTTCTTAG 3017
|||| | ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 50 CTCCAT-CATCCCACTGTGGAAGCAACATGCCGAGAAGAAAGGTCTTAG 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150601162886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5