BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477797
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05140.1 | Symbols: RBK2 | ROP binding protein kinases 2 | c... 2553 0.0
> AT3G05140.1 | Symbols: RBK2 | ROP binding protein kinases 2 |
chr3:1435698-1438341 REVERSE LENGTH=2043
Length=2043
Score = 2553 bits (1382), Expect = 0.0
Identities = 1786/1973 (91%), Gaps = 59/1973 (3%)
Strand=Plus/Plus
Query 30 tgttaacttctttctatttcttttctatgat-c-c-tctctatctttaggttttcAGGTT 86
|||||||||||||||||||| |||||||||| | | ||||||| ||||||||||||||||
Sbjct 44 TGTTAACTTCTTTCTATTTCCTTTCTATGATCCTCTTCTCTATTTTTAGGTTTTCAGGTT 103
Query 87 TCCGAGAAGATCTTAAAAGT-T--T-CTGA-ACTCTTTCATGGCGGTAGACCAAAGCAAA 141
|| ||||| ||||||||||| | | | | |||||||||||||||||||||||||||||
Sbjct 104 TCTGAGAAAATCTTAAAAGTGTCCTACCAACACTCTTTCATGGCGGTAGACCAAAGCAAA 163
Query 142 GAAGCTTCTCCCTTGTCTTGTGCTCTTCCAATGTAATTATTCAATCAAAAGCAC-TTTTT 200
|||||||||||| ||| |||||||||||||||||||| |||||||| ||| ||| |||||
Sbjct 164 GAAGCTTCTCCCGTGTGTTGTGCTCTTCCAATGTAATCATTCAATC-AAATCACTTTTTT 222
Query 201 CTATGTTTGTGCTTATATTTGA-TTAAG-TTTTGTCT-GTAGACATGATATAAATGT-GA 256
|| ||||||| ||||||||||| || || |||| | | ||||||||||||| ||||| |
Sbjct 223 CTCTGTTTGTTCTTATATTTGATTTGAGTTTTTTTTTGGTAGACATGATATTAATGTCTA 282
Query 257 -AATTTCTATTCTGCTATTCTCTCATAATTTTCATTGAAACTTCCCAGAGTGTTTAAGCA 315
|| || || ||| || |||| | || ||||||||||| |||| | || |||||||||
Sbjct 283 GAAGTT-TA-TCTTCTGTTCTGTTATGATTTTCATTGATACTTAAC-GAACGTTTAAGCA 339
Query 316 G-ATTAACGAACTTTACC-------TCA---ATCTTCTCTTACTTT----C--AATTTAC 358
| ||||||||||||| || ||| || |||||||| ||| | |||||||
Sbjct 340 GAATTAACGAACTTTCCCTGAATTTTCACCGATTTTCTCTTAATTTCCCGCAAAATTTAC 399
Query 359 AGAAGAACAACATGTTTAGTTTGTTCTTTTAATCTGAATCTTCCGAGGCAGGTACAACTC 418
| |||||| ||||||||||| ||||||||| | ||||||| ||||||||||||||||||
Sbjct 400 ATAAGAACGACATGTTTAGTCTGTTCTTTTCTTTTGAATCTCCCGAGGCAGGTACAACTC 459
Query 419 TAAATATTCAAGTTATGTCACTGACGAAGATTCAAACGATATGAATCATACGACAAAACA 478
|||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||||||
Sbjct 460 TAAATATTCAAGTTATGTCACTGAAGAAGATCCAAACGACATAAATCATACGTCAAAACA 519
Query 479 TAAAAGAACCAACGCTTTTCTTTTGAATTCTGCTTCAGCTCACGATCTAAGATGT-CTAG 537
||||||||||||||| |||||| ||||||||||||||||||| |||||||||| | ||||
Sbjct 520 TAAAAGAACCAACGCGTTTCTTATGAATTCTGCTTCAGCTCATGATCTAAGAT-TACTAG 578
Query 538 AGGTCGAGAAAGAGAAGCAAGACCCTAAATCACCGAGAGGAGCCTTAGAAGCCTGCTTAA 597
|||| || ||||||||||||||||| |||||||| ||||||||| | |||||||||||||
Sbjct 579 AGGTAGATAAAGAGAAGCAAGACCCCAAATCACCAAGAGGAGCCCTCGAAGCCTGCTTAA 638
Query 598 CCCGTTCCTCAATCTCTT---C--CA-CTTCCTCTGACGACCCTCCTCCAAACAGAGAAG 651
| |||| ||||||||||| | || |||| |||||||| |||||||||||||||||||
Sbjct 639 CTCGTTGCTCAATCTCTTCCGCTTCATCTTCATCTGACGATCCTCCTCCAAACAGAGAAG 698
Query 652 CTAGCGATAACGCAGATGCAGACACAGACGCACAGTGCAAGAATCACAGAGCATCTTCGA 711
||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 699 CTATCGACAATGCAGATGCAGACACAGACGTACAGTGCAAGAATCACAGAGCATCTTCTA 758
Query 712 ACTGGGGAAAATTCTTCAAGCTATGGAAACGCAGATCCATGAAACGCCTCTCTTCCTTTC 771
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 ATTGGGGAAAATTCTTCAAGCTATGGAAACGCAGATCCATGAAACGCCTCTCTTCCTTTC 818
Query 772 CTCCATTAAGTGGCGCCGCCCCATCGATC-TCCAAA-AGCAACAAAA---C--A--C--A 820
||||||||||||||||||||||| ||||| | |||| | ||||||| | | | |
Sbjct 819 CTCCATTAAGTGGCGCCGCCCCACCGATCAT-CAAACA-AAACAAAAGTGCAGATCCAAA 876
Query 821 CATCG-ATGGTATGGTCCTTCACGATATCTACGATTTCCAATCATCTCTCCACAACTTCT 879
||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 877 CAT-GAATGGCATGGTCCTTCACGATATCTACGATTTCCAATCATCTCTCCAAAACTTCT 935
Query 880 CAATCTCTGACATCGAAATTGCAACTGACAATTTCAGTCCAGAAAACATTATTGGAAGAG 939
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 936 CAATATCTGACATCGAAATTGCAACTGACAATTTCAGTCCAGAAAACATTATCGGTAGAG 995
Query 940 GCGGTTATGCTGAGGTATACCAGGGAATTCTACCGGAAGGAAAGCTAATCGCTGTGAAAC 999
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GCGGTTACGCCGATGTATACCAGGGAATTCTACCGGAAGGAAAGCTAATCGCTGTGAAAC 1055
Query 1000 GCCTGACGAAAGGCACACCGGATGAGCAAACAGCCGAGTTTCTATCGGAACTTGGGATAA 1059
| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1056 GTTTGACAAAAGGCACACCGGACGAGCAAACAGCTGAGTTTCTATCGGAACTTGGGATTA 1115
Query 1060 TAGCTCATGTTGATCATCCGAACACAGCCAAATTCATCGGTTGTTGTATCGAGGGTGGAA 1119
| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1116 TTGCTCATGTTGATCATCCTAACACTGCCAAATTCATCGGTTGTTGCATCGAGGGTGGAA 1175
Query 1120 TGCATCTCGTGTTCCGGCTATCTCCTCTTGGAAGCTTAGGCTCTCTCCTCCATGGACCAT 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TGCATCTCGTGTTCCGGCTATCTCCTCTTGGAAGCTTAGGCTCTCTCCTCCATGGACCAT 1235
Query 1180 CGAAATATAAGCTGACTTGGAGCAGACGTTACAATGTAGCGTTAGGAACAGCTGATGGAC 1239
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1236 CAAAATATAAGCTGACTTGGAGCAGACGTTACAATGTAGCGTTAGGAACAGCAGATGGAC 1295
Query 1240 TAGTGTATCTTCACGAGGGTTGTCAAAGACGAATTATTCATCGAGACATCAAAGCCGATA 1299
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1296 TAGTGTATCTTCATGAGGGTTGTCAAAGACGAATCATTCATCGAGACATCAAAGCTGATA 1355
Query 1300 ATATTCTTCTCACCGAAGATTTTCAACCACAGATTTGCGATTTCGGGTTAGCCAAATGGC 1359
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1356 ATATTCTTCTCACCGAAGATTTTCAACCGCAGATTTGCGACTTCGGGTTAGCCAAATGGC 1415
Query 1360 TTCCCAAACAATTGACACACCATAACGTGTCCAAATTCGAGGGAACATTCGGGTACTTTG 1419
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1416 TTCCCAAGCAATTGACACACCATAACGTATCCAAATTTGAGGGAACATTCGGGTACTTTG 1475
Query 1420 CACCAGAATATTTCATGCACGGAATTGTAGACGAGAAGACAGATGTTTTTGCCTTTGGAG 1479
|||| |||||||||||||||||||| || ||||||||||| |||||||| || |||||||
Sbjct 1476 CACCTGAATATTTCATGCACGGAATCGTGGACGAGAAGACTGATGTTTTCGCTTTTGGAG 1535
Query 1480 TTCTCCTCTTGGAGCTCATAACGGGCCACCCTGCTCTTGACGAGTCTCAGCAGAGCCTTG 1539
|||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 1536 TTCTCCTCTTGGAGCTCATAACCGGACATCCTGCCCTTGACGAGTCTCAGCAGAGCCTTG 1595
Query 1540 TCTTATGGGCTAAGCCGTTGCTAGAGAAAAAAGCTATAAGAGAATTGGTGGATCCGTCTC 1599
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 1596 TCTTATGGGCTAAGCCGTTGCTAGAGAGAAAAGCTATAAAAGAATTGGTGGATCCATCTC 1655
Query 1600 TTGGAGATGAGTATAACAGAGAAGAGCTTATCCGGTTAACTTCCACAGCTTCTTTGTGCA 1659
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1656 TTGGAGATGAGTATAACCGAGAAGAGCTTATCCGGTTAACTTCCACGGCTTCTTTATGCA 1715
Query 1660 TCGATCAGTCTTCTCTTCTACGACCCCGGATGAGCCAGGTTGTGGAATTACTACTAGGTC 1719
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1716 TCGATCAATCTTCTCTTCTACGACCCCGGATGAGCCAGGTTGTGGAATTATTACTAGGCC 1775
Query 1720 ACGAAGGTGTCGTAATGACTCCAAGAGAAGCCAAGATAAAGATGATGCAACGCACGTATT 1779
|||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1776 ACGAAGATGTCGTAATGACTCCAAGAGAAGCGAAGATAAAGATGATGCAACGAACGTATT 1835
Query 1780 CAGAAGAATTATTAGATAGTGTAGAATATAACTCCACAAAGTACTTGGGAGATCTTGATC 1839
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1836 CCGAAGAATTATTAGATAGTGTAGAATATAACTCCACTAAGTACTTGGGAGATCTTGATC 1895
Query 1840 GTATTCGAGAGATTGCTTTAGCTTCTTGAAATTGATCAAAATTACAATTATGTGAAACTA 1899
| ||||||||| |||||||||| ||||||||| |||| |||||| ||||||| ||||||
Sbjct 1896 GCATTCGAGAGGTTGCTTTAGCCTCTTGAAATCGATCCAAATTATTATTATGTAAAACTA 1955
Query 1900 TTTTGGTTTCTTTCATTGGTGAATGTAACTCATCGTaaaaaattac-aaaaaa 1951
|||||||||||||||||||||||||||| || | | |||||||||| ||||||
Sbjct 1956 TTTTGGTTTCTTTCATTGGTGAATGTAAATCGTTGGAAAAAATTACCAAAAAA 2008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97188255120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5