BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477797 Length=1962 Score E Sequences producing significant alignments: (Bits) Value AT3G05140.1 | Symbols: RBK2 | ROP binding protein kinases 2 | c... 2553 0.0 > AT3G05140.1 | Symbols: RBK2 | ROP binding protein kinases 2 | chr3:1435698-1438341 REVERSE LENGTH=2043 Length=2043 Score = 2553 bits (1382), Expect = 0.0 Identities = 1786/1973 (91%), Gaps = 59/1973 (3%) Strand=Plus/Plus Query 30 tgttaacttctttctatttcttttctatgat-c-c-tctctatctttaggttttcAGGTT 86 |||||||||||||||||||| |||||||||| | | ||||||| |||||||||||||||| Sbjct 44 TGTTAACTTCTTTCTATTTCCTTTCTATGATCCTCTTCTCTATTTTTAGGTTTTCAGGTT 103 Query 87 TCCGAGAAGATCTTAAAAGT-T--T-CTGA-ACTCTTTCATGGCGGTAGACCAAAGCAAA 141 || ||||| ||||||||||| | | | | ||||||||||||||||||||||||||||| Sbjct 104 TCTGAGAAAATCTTAAAAGTGTCCTACCAACACTCTTTCATGGCGGTAGACCAAAGCAAA 163 Query 142 GAAGCTTCTCCCTTGTCTTGTGCTCTTCCAATGTAATTATTCAATCAAAAGCAC-TTTTT 200 |||||||||||| ||| |||||||||||||||||||| |||||||| ||| ||| ||||| Sbjct 164 GAAGCTTCTCCCGTGTGTTGTGCTCTTCCAATGTAATCATTCAATC-AAATCACTTTTTT 222 Query 201 CTATGTTTGTGCTTATATTTGA-TTAAG-TTTTGTCT-GTAGACATGATATAAATGT-GA 256 || ||||||| ||||||||||| || || |||| | | ||||||||||||| ||||| | Sbjct 223 CTCTGTTTGTTCTTATATTTGATTTGAGTTTTTTTTTGGTAGACATGATATTAATGTCTA 282 Query 257 -AATTTCTATTCTGCTATTCTCTCATAATTTTCATTGAAACTTCCCAGAGTGTTTAAGCA 315 || || || ||| || |||| | || ||||||||||| |||| | || ||||||||| Sbjct 283 GAAGTT-TA-TCTTCTGTTCTGTTATGATTTTCATTGATACTTAAC-GAACGTTTAAGCA 339 Query 316 G-ATTAACGAACTTTACC-------TCA---ATCTTCTCTTACTTT----C--AATTTAC 358 | ||||||||||||| || ||| || |||||||| ||| | ||||||| Sbjct 340 GAATTAACGAACTTTCCCTGAATTTTCACCGATTTTCTCTTAATTTCCCGCAAAATTTAC 399 Query 359 AGAAGAACAACATGTTTAGTTTGTTCTTTTAATCTGAATCTTCCGAGGCAGGTACAACTC 418 | |||||| ||||||||||| ||||||||| | ||||||| |||||||||||||||||| Sbjct 400 ATAAGAACGACATGTTTAGTCTGTTCTTTTCTTTTGAATCTCCCGAGGCAGGTACAACTC 459 Query 419 TAAATATTCAAGTTATGTCACTGACGAAGATTCAAACGATATGAATCATACGACAAAACA 478 |||||||||||||||||||||||| |||||| ||||||| || ||||||||| ||||||| Sbjct 460 TAAATATTCAAGTTATGTCACTGAAGAAGATCCAAACGACATAAATCATACGTCAAAACA 519 Query 479 TAAAAGAACCAACGCTTTTCTTTTGAATTCTGCTTCAGCTCACGATCTAAGATGT-CTAG 537 ||||||||||||||| |||||| ||||||||||||||||||| |||||||||| | |||| Sbjct 520 TAAAAGAACCAACGCGTTTCTTATGAATTCTGCTTCAGCTCATGATCTAAGAT-TACTAG 578 Query 538 AGGTCGAGAAAGAGAAGCAAGACCCTAAATCACCGAGAGGAGCCTTAGAAGCCTGCTTAA 597 |||| || ||||||||||||||||| |||||||| ||||||||| | ||||||||||||| Sbjct 579 AGGTAGATAAAGAGAAGCAAGACCCCAAATCACCAAGAGGAGCCCTCGAAGCCTGCTTAA 638 Query 598 CCCGTTCCTCAATCTCTT---C--CA-CTTCCTCTGACGACCCTCCTCCAAACAGAGAAG 651 | |||| ||||||||||| | || |||| |||||||| ||||||||||||||||||| Sbjct 639 CTCGTTGCTCAATCTCTTCCGCTTCATCTTCATCTGACGATCCTCCTCCAAACAGAGAAG 698 Query 652 CTAGCGATAACGCAGATGCAGACACAGACGCACAGTGCAAGAATCACAGAGCATCTTCGA 711 ||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 699 CTATCGACAATGCAGATGCAGACACAGACGTACAGTGCAAGAATCACAGAGCATCTTCTA 758 Query 712 ACTGGGGAAAATTCTTCAAGCTATGGAAACGCAGATCCATGAAACGCCTCTCTTCCTTTC 771 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 ATTGGGGAAAATTCTTCAAGCTATGGAAACGCAGATCCATGAAACGCCTCTCTTCCTTTC 818 Query 772 CTCCATTAAGTGGCGCCGCCCCATCGATC-TCCAAA-AGCAACAAAA---C--A--C--A 820 ||||||||||||||||||||||| ||||| | |||| | ||||||| | | | | Sbjct 819 CTCCATTAAGTGGCGCCGCCCCACCGATCAT-CAAACA-AAACAAAAGTGCAGATCCAAA 876 Query 821 CATCG-ATGGTATGGTCCTTCACGATATCTACGATTTCCAATCATCTCTCCACAACTTCT 879 ||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 877 CAT-GAATGGCATGGTCCTTCACGATATCTACGATTTCCAATCATCTCTCCAAAACTTCT 935 Query 880 CAATCTCTGACATCGAAATTGCAACTGACAATTTCAGTCCAGAAAACATTATTGGAAGAG 939 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 936 CAATATCTGACATCGAAATTGCAACTGACAATTTCAGTCCAGAAAACATTATCGGTAGAG 995 Query 940 GCGGTTATGCTGAGGTATACCAGGGAATTCTACCGGAAGGAAAGCTAATCGCTGTGAAAC 999 ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 GCGGTTACGCCGATGTATACCAGGGAATTCTACCGGAAGGAAAGCTAATCGCTGTGAAAC 1055 Query 1000 GCCTGACGAAAGGCACACCGGATGAGCAAACAGCCGAGTTTCTATCGGAACTTGGGATAA 1059 | |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 1056 GTTTGACAAAAGGCACACCGGACGAGCAAACAGCTGAGTTTCTATCGGAACTTGGGATTA 1115 Query 1060 TAGCTCATGTTGATCATCCGAACACAGCCAAATTCATCGGTTGTTGTATCGAGGGTGGAA 1119 | ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 1116 TTGCTCATGTTGATCATCCTAACACTGCCAAATTCATCGGTTGTTGCATCGAGGGTGGAA 1175 Query 1120 TGCATCTCGTGTTCCGGCTATCTCCTCTTGGAAGCTTAGGCTCTCTCCTCCATGGACCAT 1179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1176 TGCATCTCGTGTTCCGGCTATCTCCTCTTGGAAGCTTAGGCTCTCTCCTCCATGGACCAT 1235 Query 1180 CGAAATATAAGCTGACTTGGAGCAGACGTTACAATGTAGCGTTAGGAACAGCTGATGGAC 1239 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1236 CAAAATATAAGCTGACTTGGAGCAGACGTTACAATGTAGCGTTAGGAACAGCAGATGGAC 1295 Query 1240 TAGTGTATCTTCACGAGGGTTGTCAAAGACGAATTATTCATCGAGACATCAAAGCCGATA 1299 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1296 TAGTGTATCTTCATGAGGGTTGTCAAAGACGAATCATTCATCGAGACATCAAAGCTGATA 1355 Query 1300 ATATTCTTCTCACCGAAGATTTTCAACCACAGATTTGCGATTTCGGGTTAGCCAAATGGC 1359 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1356 ATATTCTTCTCACCGAAGATTTTCAACCGCAGATTTGCGACTTCGGGTTAGCCAAATGGC 1415 Query 1360 TTCCCAAACAATTGACACACCATAACGTGTCCAAATTCGAGGGAACATTCGGGTACTTTG 1419 ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1416 TTCCCAAGCAATTGACACACCATAACGTATCCAAATTTGAGGGAACATTCGGGTACTTTG 1475 Query 1420 CACCAGAATATTTCATGCACGGAATTGTAGACGAGAAGACAGATGTTTTTGCCTTTGGAG 1479 |||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||| Sbjct 1476 CACCTGAATATTTCATGCACGGAATCGTGGACGAGAAGACTGATGTTTTCGCTTTTGGAG 1535 Query 1480 TTCTCCTCTTGGAGCTCATAACGGGCCACCCTGCTCTTGACGAGTCTCAGCAGAGCCTTG 1539 |||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||| Sbjct 1536 TTCTCCTCTTGGAGCTCATAACCGGACATCCTGCCCTTGACGAGTCTCAGCAGAGCCTTG 1595 Query 1540 TCTTATGGGCTAAGCCGTTGCTAGAGAAAAAAGCTATAAGAGAATTGGTGGATCCGTCTC 1599 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| Sbjct 1596 TCTTATGGGCTAAGCCGTTGCTAGAGAGAAAAGCTATAAAAGAATTGGTGGATCCATCTC 1655 Query 1600 TTGGAGATGAGTATAACAGAGAAGAGCTTATCCGGTTAACTTCCACAGCTTCTTTGTGCA 1659 ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| Sbjct 1656 TTGGAGATGAGTATAACCGAGAAGAGCTTATCCGGTTAACTTCCACGGCTTCTTTATGCA 1715 Query 1660 TCGATCAGTCTTCTCTTCTACGACCCCGGATGAGCCAGGTTGTGGAATTACTACTAGGTC 1719 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 1716 TCGATCAATCTTCTCTTCTACGACCCCGGATGAGCCAGGTTGTGGAATTATTACTAGGCC 1775 Query 1720 ACGAAGGTGTCGTAATGACTCCAAGAGAAGCCAAGATAAAGATGATGCAACGCACGTATT 1779 |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1776 ACGAAGATGTCGTAATGACTCCAAGAGAAGCGAAGATAAAGATGATGCAACGAACGTATT 1835 Query 1780 CAGAAGAATTATTAGATAGTGTAGAATATAACTCCACAAAGTACTTGGGAGATCTTGATC 1839 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1836 CCGAAGAATTATTAGATAGTGTAGAATATAACTCCACTAAGTACTTGGGAGATCTTGATC 1895 Query 1840 GTATTCGAGAGATTGCTTTAGCTTCTTGAAATTGATCAAAATTACAATTATGTGAAACTA 1899 | ||||||||| |||||||||| ||||||||| |||| |||||| ||||||| |||||| Sbjct 1896 GCATTCGAGAGGTTGCTTTAGCCTCTTGAAATCGATCCAAATTATTATTATGTAAAACTA 1955 Query 1900 TTTTGGTTTCTTTCATTGGTGAATGTAACTCATCGTaaaaaattac-aaaaaa 1951 |||||||||||||||||||||||||||| || | | |||||||||| |||||| Sbjct 1956 TTTTGGTTTCTTTCATTGGTGAATGTAAATCGTTGGAAAAAATTACCAAAAAA 2008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97188255120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5