BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477798
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05150.1 | Symbols: | Major facilitator superfamily protein... 2394 0.0
AT1G08900.1 | Symbols: | Major facilitator superfamily protein... 56.5 7e-07
> AT3G05150.1 | Symbols: | Major facilitator superfamily protein
| chr3:1440073-1443530 FORWARD LENGTH=1640
Length=1640
Score = 2394 bits (1296), Expect = 0.0
Identities = 1436/1505 (95%), Gaps = 4/1505 (0%)
Strand=Plus/Plus
Query 1 GTTTTTAGATCTAAAGACACGGTGCCTTCTCATTTCCTCCGGGCATTCTACGAAGAAAAT 60
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 GTTTTTAGATCTAAAAACACGGTGCCTTCTCATTTCCTCCGGGCATTTTACGAAGAAAAT 60
Query 61 GGCGAGAACAAAAGACGACATGGAGAAAATGAACGACAAAGCCGGGCCGTTGCTGCTGCC 120
|| || || |||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 61 GGAGACAAGAAAAGACGACATGGAGAAAAGGAACGACAAATCCGAGCCGTTGCTGCTGCC 120
Query 121 GGAGAATGGATCCGATGTCTCAGAAGAAACGTCGTGGATGGTTTATCTAAGCACAATCAT 180
||||||||||||||| |||||||||||| | || |||||||||||||||||||| |||||
Sbjct 121 GGAGAATGGATCCGACGTCTCAGAAGAAGCATCATGGATGGTTTATCTAAGCACGATCAT 180
Query 181 TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATATTCTGCTCCGACCCAGTT 240
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 181 TGCCGTTTGCGGTTCCTACGAGTTTGGAACATGCGTGGGATACTCCGCTCCAACACAGTT 240
Query 241 TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCAGTTTTTGGATCGATACT 300
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 241 TGGGATTATGGAAGAGCTTAATTTATCATATTCCCAGTTTTCGGTTTTCGGATCGATATT 300
Query 301 GAATGTGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATCTCTGATTTCATCGGTCG 360
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GAATATGGGAGCAGTGCTCGGCGCCATTACATCGGGGAAGATTTCTGATTTCATCGGTCG 360
Query 361 GAAAGGGGCCATGAGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAGGGGCCATGCGGTTGTCTTCAGTGATCTCTGCCATCGGCTGGCTGATAATTTACTT 420
Query 421 CGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTGACGGGTTTTGGTTGCGGCAC 480
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 421 GGCCAAGGGTGACGTACCTTTGGATTTCGGAAGATTTCTAACGGGTTATGGTTGCGGTAC 480
Query 481 CCTTTCCTTTGTGGTACCGGTATTCATCGCTGAAATTAGTCCAAGAAAATTGAGAGGCGC 540
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 481 CCTTTCCTTTGTGGTACCGGTCTTCATCGCCGAAATTAGTCCGAGAAAATTGAGAGGAGC 540
Query 541 CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTAGCGACGCTTAACCAGCTCTTTATCGTAATCGGATTAGCTTCTATGTTCCTCATAGG 600
Query 601 CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGCCGTCGTAAATTGGAGAACTCTTGCACTAACCGGAGTTGCACCGTGCGTGGTTCTATT 660
Query 661 CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCACCA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CTTTGGGACTTGGTTCATCCCTGAATCACCCAGATGGCTGGAAATGGTTGGCCGCCAC-A 719
Query 721 C-GATTTTGAAATTGCGTTGCAAAAGCTGAGGGGTCCTCACACCAATATCAGAAGAGAAG 779
||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 720 GTGATTTTGAAATTGCGTTGCAAAAACTGAGGGGTCCTCAGGCCAATATCACAAGAGAAG 779
Query 780 CCGAGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCAAAAGCCACGCTG-TGG 838
||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 780 CCGGGGAAATTCAGGAGTACTTAGCGAGTCTTGCTCACCTCCCGAAAGCCACATTGATGG 839
Query 839 GACCTTATTGACAAAAAGAATATTCGATTTGTGATTGTTGGAGTTGGTTTGATGTTTTTC 898
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 -ACCTTATTGACAAAAAGAATATTCGATTTGTGATAGTTGGAGTTGGTTTGATGTTTTTC 898
Query 899 CAACAATTCGTTGGAATAAATGGTGTTATCTTCTACGCACAACAAATATTCGTATCGGCA 958
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 899 CAACAATTCGTTGGAATTAATGGCGTTATCTTCTACGCACAACAAATATTCGTATCAGCA 958
Query 959 GGGGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTTGTTCTTACAGCA 1018
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 959 GGAGCATCCCCAACTCTTGGAAGCATTCTATACTCGATCGAACAAGTCGTTCTCACAGCA 1018
Query 1019 CTCGGTGCAACATTGCTAATTGATCGTCTTGGTAGAAGGCCACTTCTTATGGCTTCAGCT 1078
|| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1019 CTAGGCGCAACATTGCTAATTGATCGGCTTGGAAGAAGGCCACTTCTTATGGCTTCAGCT 1078
Query 1079 GTTGGGATGCTGATTGGATGTTTGCTCATTGGAAATTCATTTCTTTTGAAGGCTCATGGT 1138
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1079 GTTGGGATGCTGATTGGATGTTTGCTCATCGGAAATTCATTTCTTTTGAAGGCTCATGGT 1138
Query 1139 TTAGCACTTGACATCATTCCGGCCCTGGCAGTTAGTGGTGTCTTGGTCTACATTGGTTCG 1198
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1139 TTAGCACTTGACATCATTCCGGCTCTGGCAGTTAGTGGTGTCTTGGTCTACATCGGTTCG 1198
Query 1199 TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTCTCTATTGGAATGGGTGCAATCCCATGGGTTATAATGTCTGAGATATTTCCAATAAAT 1258
Query 1259 ATGAAAGGAACTGCTGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC 1318
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGAAAGGAACTGCCGGAGGACTTGTCACTGTAGTAAATTGGCTAAGTTCATGGCTTGTC 1318
Query 1319 TCCTTCACTTTCAACTTTCTCATGATTTGGAGCACTCATGGTACATTTTATGTATATGGT 1378
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1319 TCATTCACTTTCAACTTTCTCATGATTTGGAGCCCTCATGGTACATTTTATGTGTATGGT 1378
Query 1379 GGCGTATGTGTATTTGCTATTGTCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA 1438
|| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGGGTATGTGTATTGGCTATTATCTTCATAGCAAAACTTGTTCCTGAAACTAAAGGCAGA 1438
Query 1439 ACCTTGGAAGAGATTCAAGCAATGATGATGTAATTCTATAATTATATAATACATGTTAAt 1498
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 1439 ACCTTGGAAGAGATTCAAGCAATGATGATGTAACTCTGTAAATATATAATACATGTTAAT 1498
Query 1499 ttttt 1503
|||||
Sbjct 1499 TTTTT 1503
> AT1G08900.1 | Symbols: | Major facilitator superfamily protein
| chr1:2852454-2855779 FORWARD LENGTH=1543
Length=1543
Score = 56.5 bits (30), Expect = 7e-07
Identities = 38/42 (90%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1223 CCATGGGTTATAATGTCTGAGATATTTCCAATAAATATGAAA 1264
||||||||||||||||||||||||||||| | ||| |||||
Sbjct 1156 CCATGGGTTATAATGTCTGAGATATTTCCGGTGAATGTGAAA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5