BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477802
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05165.1 | Symbols: | Major facilitator superfamily protein... 1823 0.0
AT3G05160.1 | Symbols: | Major facilitator superfamily protein... 1561 0.0
> AT3G05165.1 | Symbols: | Major facilitator superfamily protein
| chr3:1458136-1462917 REVERSE LENGTH=1619
Length=1619
Score = 1823 bits (987), Expect = 0.0
Identities = 1076/1119 (96%), Gaps = 6/1119 (1%)
Strand=Plus/Plus
Query 62 CAAGAAGATTTCTTGGGAAAAAATATTAAGAGGGGTGAAGGATTAATCGTAAGAAATGGT 121
||| |||||||||||||| |||||| | | || |||||||||| || | || ||||||
Sbjct 13 CAA-AAGATTTCTTGGGAGAAAATA--AGGTGGATTGAAGGATTAGTCTTTAGGAATGGT 69
Query 122 GGT---GGAGGAGAATAGAAGCATGGAGGAAGGACTTCTTCGGCATGGAAACGACAGAGA 178
||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 70 GGTGGAGGAGGAGAATAGAAGCATGGAGGAAGGACTTCTTCAGCATCAAAACGACAGAGA 129
Query 179 TGATCGTCGTATCACTGCTTGTGTTATCCTCAGCACTTTTGTCGCTGTTTGTAGTGCCTT 238
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 130 TGATCGTCGTATCACAGCTTGTGTCATCCTCAGCACTTTTGTCGCTGTTTGTAGTGCCTT 189
Query 239 CAGCTATGGATGTGCCGCTGGTTATACTTCAGGCGCTGAGACTGCTATCATGAAGGAGTT 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CAGCTACGGATGTGCCGCTGGTTATACTTCAGGCGCTGAGACTGCTATCATGAAGGAGTT 249
Query 299 AAACCTTTCTATGGCACAATTTTCAGCGTTTGGCTCCTTTATGAATGTGGGGGGTGCGGT 358
| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 250 AGACCTTTCTATGGCACAATTTTCAGCGTTTGGCTCCTTTCTGAATGTGGGAGGTGCGGT 309
Query 359 GGGGGCCTTGTTCAGCGGTCAATTGGCAGTCATCCTCGGCAGAAGACGAACGTTGTGGGC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGGGGCCTTGTTCAGCGGTCAATTGGCAGTCATCCTCGGCAGAAGACGAACGTTGTGGGC 369
Query 419 ATGCGATTTTTTCTGCATTTTTGGCTGGCTCTCCATTGCTTTCGCAAAGAATGTCTTCTG 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ATGCGATTTTTTCTGCGTTTTTGGCTGGCTCTCCATTGCTTTCGCAAAGAATGTCTTCTG 429
Query 479 GCTGGACTTGGGAAGAATTTCCTTGGGCATAGGAGTCGGCTTGATTAGCTACGTGGTCCC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GCTGGACTTGGGAAGAATTTCCTTGGGCATAGGAGTCGGCTTGATTAGCTACGTGGTCCC 489
Query 539 TGTCTATATTGCGGAAATCACTCCAAAACATGTTCGTGGCGCATTTACTTCTTCAAACCA 598
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 490 AGTCTATATTGCGGAAATCACTCCAAAACATGTTCGTGGCGCATTTACTGCTTCAAACCA 549
Query 599 GCTTCTTCAAAACAGTGGAATTTCCCTAATTTAtttttttGGGACTGTAATTAATTGGCG 658
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 550 GCTTCTTCAAAACAGTGGAGTTTCCCTGATTTATTTTTTTGGGACTGTAATTAATTGGCG 609
Query 659 GGTTCTGGCTGTTATAGGTGCAATTCCATGCATCCTTCAAATGATCGGTATATTTTACAT 718
|||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 610 GGTTATGGCCGTTATAGGTGCAATTCCATGCATCCTTCAAACGATCGGTATATTTTTTAT 669
Query 719 ACCGGAATCTCCAAGATGGCTGGCTAAAATCGGTTTAGGCAAAGAAGTAGAAAGTTCTTT 778
||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 670 ACCGGAATCTCCAAGATGGCTGGCTAAAATCCGTTTAAGTAAAGAAGTAGAAAGTTCTTT 729
Query 779 GCATCGACTTAGAGGGAAAGATACTGATGTTTCAGGTGAAGCAGCTGAAATTCAGGTTAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GCATCGACTTAGAGGGAAAGATACTGATGTTTCAGGTGAAGCAGCTGAAATTCAGGTTAT 789
Query 839 GACAAAAATGCTTGAAGAAGATTCAAAGTCTAGTTTCTCTGACATGTTTCAGAAGAAGTA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GACAAAAATGCTTGAAGAAGATTCAAAGTCTAGTTTCTCTGACATGTTTCAGAAGAAGTA 849
Query 899 TAGACGAACTCTTGTGGTTGGAATTGGTTTAATGTTGATACAACAATTATCTGGAGCTAG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CAGACGAACTCTTGTGGTTGGAATTGGTTTAATGTTGATACAACAATTATCTGGAGCTAG 909
Query 959 TGGTATCACATATTATTCAAATGCCATATTTAGGAAAGCTGGCTTTTCAGAGAGACTTGG 1018
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 910 CGGTATCACATATTATTCAAATGCCATATTTAGAAAAGCTGGCTTTTCAGAGAGACTTGG 969
Query 1019 ATCAATGATATTTGGTGTGTTCGTGATCCCAAAAGCTTTGGTTAGTCTGATTCTTGTGGA 1078
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 970 ATCAATGATATTTGGTGTGTTCGTGATCCCAAAAGCTTTGGTTGGTCTGATTCTTGTGGA 1029
Query 1079 TAAATGGGGAAGACGACCACTCCTATTGGCTTCTGCTATTGGAATGTCCATCGGATCCTT 1138
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1030 TAGATGGGGAAGACGACCACTCCTATTGGCTTCTGCTGTTGGAATGTCCATCGGATCCTT 1089
Query 1139 GCTTATTGGAGTTAGCTTCACGTTACAGCAAATGAATGT 1177
|||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GCTTATTGGAGTTAGCTTCACGTTACAGCAAATGAATGT 1128
Score = 505 bits (273), Expect = 6e-142
Identities = 376/421 (89%), Gaps = 25/421 (6%)
Strand=Plus/Plus
Query 1176 GTCTACTTCGGATGTTTTGCATTCGGTATAGGAGGGCTACCTTGGGTCATTATGTCTGAG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GTCTACTTCGGATGTTTTGCATTCGGTATAGGAGGGCTACCTTGGGTCATTATGTCTGAG 1231
Query 1236 ATCTTTCCGATAAATATAAAAGTTTCAGCAGGAACAATAGTAGCATTAACATCATGGACT 1295
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1232 ATCTTTCCGATAAATATAAAAGTTTCAGCAGGAACAATTGTAGCATTAACATCATGGACT 1291
Query 1296 AGTGGGTGGTTCGTGAGTTACGCTTTCAACTTTATGTTTGAATGGAGCGCACAAGGAACA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AGTGGGTGGTTCGTGAGTTACGCTTTCAACTTTATGTTTGAATGGAGCGCACAAGGAACA 1351
Query 1356 TTTTACATATTTGCGGCTGTCGGAGGAATGTCATTGATTTTTATTTGGATGGTCGTACCG 1415
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1352 TTTTACATATTTGCGGCTGTCGGAGGAATGTCATTCATTTTTATTTGGATGCTCGTACCG 1411
Query 1416 GAAACCAAAGGACAGTCACTGGAAGAGTTGCAAGCTTCGCTTACCGGGACAACCTAAATT 1475
|||||||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||
Sbjct 1412 GAAACCAAAGGACAATCATTGGAAGAATTACAAGCTTCGCTTACGGGGACATCCTAAAT- 1470
Query 1476 GTAAAATACACGTTAAATTGTAATATA-T-T-AATTTTGTTTA-T-------TCA--TT- 1521
| | | | ||| ||||||||||| | | |||||||||| | | | ||
Sbjct 1471 GCACA-T-----TTATATTGTAATATACTATTAATTTTGTTTGGTAAAAAGATAAAATTT 1524
Query 1522 AT---CTATTGGCAGTCGCATTGCAAATAATTG-TGTATTTTATAATATTATTTGCATAT 1577
|| || ||| ||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 1525 ATTTTCTGTTGTCAGTCGCATTGCAAATAATAAATGTATTTTGTAACATTATTTGCATAT 1584
Query 1578 T 1578
|
Sbjct 1585 T 1585
> AT3G05160.1 | Symbols: | Major facilitator superfamily protein
| chr3:1453106-1457150 REVERSE LENGTH=1691
Length=1691
Score = 1561 bits (845), Expect = 0.0
Identities = 1043/1138 (92%), Gaps = 15/1138 (1%)
Strand=Plus/Plus
Query 46 AAGATTTCTTGTTGTTCA--AGAAGATTTCTTGGGAAAA--AATAT-T-AAGAGGGGTGA 99
|||||||||| ||||| | ||||||||| || |||||| ||||| | ||||| || ||
Sbjct 58 AAGATTTCTTTTTGTTTATTAGAAGATTT-TT-GGAAAATTAATATATAAAGAGAGGAGA 115
Query 100 AGGATTAATCGTAAGAAATGGTGGTGGAGGAGAATAGAAGCATGGAGGAAGGACTTCTTC 159
| ||||| |||||| | |||||| || ||| |||| ||||||||| |||||||||||||
Sbjct 116 A--ATTAAGCGTAAG-AGTGGTGGCGGGGGAAAATAAAAGCATGGAAGAAGGACTTCTTC 172
Query 160 GGCATGGAAACGACAGAGATGATCGTCGTATCACTGCTTGTGTTATCCTCAGCACTTTTG 219
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 173 GGCATGAAAACGACAGAGATGATCGTCGTATCACAGCTTGTGTTATCCTCAGCACTTTTG 232
Query 220 TCGCTGTTTGTAGTGCCTTCAGCTATGGATGTGCCGCTGGTTATACTTCAGGCGCTGAGA 279
| |||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 233 TTGCTGTTTGTAGTTCCTTCAGCTATGGATGTGCTAATGGTTATACTTCCGGCGCTGAAA 292
Query 280 CTGCTATCATGAAGGAGTTAAACCTTTCTATGGCACAATTTTCAGCGTTTGGCTCCTTTA 339
|||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 293 CTGCAATCATGAAAGAGTTAGACCTTTCTATGGCACAATTTTCAGCGTTTGGTTCCTTTT 352
Query 340 TGAA-TGTGGGGGGTGCGGTGGGGGCCTTGTTCAGCGGTCAATTGGCAGTCATCCTCGGC 398
|||| | |||| ||||||||||| || ||||| ||||||||||| ||||||||||| |||
Sbjct 353 TGAACT-TGGGAGGTGCGGTGGGAGCTTTGTTTAGCGGTCAATTAGCAGTCATCCTTGGC 411
Query 399 AGAAGACGAACGTTGTGGGCATGCGATTTTTTCTGCATTTTTGGCTGGCTCTCCATTGCT 458
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 412 AGAAGACGAACGTTGTGGGCATGCGATTTGTTCTGCATTTTTGGTTGGCTCTCCATTGCT 471
Query 459 TTCGCAAAGAATGTCTTCTGGCTGGACTTGGGAAGAATTTCCTTGGGCATAGGAGTCGGC 518
|| |||||||||||||| ||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 472 TTTGCAAAGAATGTCTTGTGGCTGGACTTGGGAAGAATTTCTTTAGGCATCGGAGTGGGC 531
Query 519 TTGATTAGCTACGTGGTCCCTGTCTATATTGCGGAAATCACTCCAAAACATGTTCGTGGC 578
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 532 TTGACTAGCTACGTGGTCCCTGTCTATATTGCGGAAATCACTCCTAAACATGTTCGTGGC 591
Query 579 GCATTTACTTCTTCAAACCAGCTTCTTCAAAACAGTGGAATTTCCCTAATTTAttttttt 638
|||||| || |||||| || |||||||||||||||||||||||| || |||||||||||
Sbjct 592 GCATTTTCTGCTTCAACCCTGCTTCTTCAAAACAGTGGAATTTCTCTGATTTATTTTTTC 651
Query 639 GGGACTGTAATTAATTGGCGGGTTCTGGCTGTTATAGGTGCAATTCCATGCATCCTTCAA 698
|| |||||||||||||||||||||||||||||||||||||| ||||||| || ||| |
Sbjct 652 GGAACTGTAATTAATTGGCGGGTTCTGGCTGTTATAGGTGCTCTTCCATGTTTCATTCCA 711
Query 699 ATGATCGGTATAT-TTTACATACCGGAATCTCCAAGATGGCTGGCTAAAATCGGTTTAGG 757
|||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 712 GTGATCGGTATATATTT-CATACCGGAATCACCAAGATGGTTGGCTAAAATCGGTTCAGT 770
Query 758 CAAAGAAGTAGAAAGTTCTTTGCATCGACTTAGAGGGAAAGATACTGATGTTTCAGGTGA 817
||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||| |||
Sbjct 771 TAAAGAAGTAGAAAACTCTCTGCATCGCCTTAGAGGGAAAGATGCTGATGTTTCAGATGA 830
Query 818 AGCAGCTGAAATTCAGGTTATGACAAAAATGCTTGAAGAAGATTCAAAGTCTAGTTTCTC 877
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 831 AGCCGCTGAAATTCAGGTTATGACAAAAATGCTTGAAGAAGATTCAAAGTCCAGTTTTTG 890
Query 878 TGACATGTTTCAGAAGAAGTATAGACGAACTCTTGTGGTTGGAATTGGTTTAATGTTGAT 937
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 891 TGACATGTTTCAGAAGAAGTATAGACGAACTCTAGTGGTTGGAATTGGTTTAATGTTGAT 950
Query 938 ACAACAATTATCTGGAGCTAGTGGTATCACATATTATTCAAATGCCATATTTAGGAAAGC 997
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 951 ACAACAATTATCTGGAGCTAGCGGTATCACATATTATTCAAATGCCATATTTAGAAAAGC 1010
Query 998 TGGCTTTTCAGAGAGACTTGGATCAATGATATTTGGTGTGTTCGTGATCCCAAAAGCTTT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TGGCTTTTCAGAGAGACTTGGATCAATGATATTTGGTGTGTTCGTGATCCCAAAAGCTTT 1070
Query 1058 GGTTAGTCTGATTCTTGTGGATAAATGGGGAAGACGACCACTCCTATTGGCTTCTGCTAT 1117
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1071 GGTTGGTCTGATTCTTGTGGATAGATGGGGAAGACGACCACTCCTATTGGCTTCTGCTGT 1130
Query 1118 TGGAATGTCCATCGGATCCTTGCTTATTGGAGTTAGCTTCACGTTACAGCAAATGAAT 1175
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1131 TGGAATGTCTATCGGATCCTTGCTTATTGGGGTTAGCTTCACGTTACAGGAAATGAAT 1188
Score = 375 bits (203), Expect = 5e-103
Identities = 268/300 (89%), Gaps = 2/300 (1%)
Strand=Plus/Plus
Query 1176 GTCTACTTCGGATGTTTTGCATTCGGTATAGGAGGGCTACCTTGGGTCATTATGTCTGAG 1235
|||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1234 GTCTACTTTGGATTTTTTGCAATCGGTATAGGAGGGCTACCTTGGATCATTATGTCTGAG 1293
Query 1236 ATCTTTCCGATAAATATAAAAGTTTCAGCAGGAACAATAGTAGCATTAACATCATGGACT 1295
|| ||||||||||||||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 1294 ATATTTCCGATAAATATAAAAGTTTCAGCAGGGTCAATCGTTGCATTAACATCGTGGACC 1353
Query 1296 AGTGGGTGGTTCGTGAGTTACGCTTTCAACTTTATGTTTGAATGGAGCGCACAAGGAACA 1355
| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1354 ACTGGGTGGTTCGTTAGTTATGGTTTCAACTTTATGTTTGAATGGAGCGCACAAGGAACC 1413
Query 1356 TTTTACATATTTGCGGCTG-TCGGAGGAATGTCATTGATTTTTATTTGGATGGTCGTACC 1414
||||||||||||||| || | || ||| |||||||| ||||||| |||||| |||| ||
Sbjct 1414 TTTTACATATTTGCGA-TGGTGGGGGGATTGTCATTGCTTTTTATATGGATGCTCGTGCC 1472
Query 1415 GGAAACCAAAGGACAGTCACTGGAAGAGTTGCAAGCTTCGCTTACCGGGACAACCTAAAT 1474
|||||||||||||||||| || ||||| |||||||| || ||||| ||||||||||||||
Sbjct 1473 GGAAACCAAAGGACAGTCGCTTGAAGAATTGCAAGCATCCCTTACGGGGACAACCTAAAT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5